RNA–Protein interactions for RNA: ENST00000580054.1

SMARCD2-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2, humanhuman

TSL 5

Gene SMARCD2, Length 477 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD2-208ENST00000580054 SYTL4Q96C24 671 aaPredicted RBP13.4□□□□□ -0.26
SMARCD2-208ENST00000580054 TAF1LQ8IZX4 1826 aa13.4□□□□□ -0.26
SMARCD2-208ENST00000580054 USP31Q70CQ4 1352 aa13.4□□□□□ -0.26
SMARCD2-208ENST00000580054 MSH5O43196 834 aa13.39□□□□□ -0.27
SMARCD2-208ENST00000580054 PRIM1P49642 420 aaKnown RBP13.39□□□□□ -0.27
SMARCD2-208ENST00000580054 ANKRD36BQ8N2N9 1353 aa13.39□□□□□ -0.27
SMARCD2-208ENST00000580054 CD163L1Q9NR16 1453 aa13.39□□□□□ -0.27
SMARCD2-208ENST00000580054 SBNO2Q9Y2G9 1366 aa13.38□□□□□ -0.27
SMARCD2-208ENST00000580054 WWC3Q9ULE0 1092 aa13.38□□□□□ -0.27
SMARCD2-208ENST00000580054 TOGARAM1Q9Y4F4 1720 aa13.38□□□□□ -0.27
SMARCD2-208ENST00000580054 CCNL1Q9UK58 526 aaPredicted RBP13.37□□□□□ -0.27
SMARCD2-208ENST00000580054 MEGF6O75095 1541 aa13.36□□□□□ -0.27
SMARCD2-208ENST00000580054 KIF3CO14782 793 aa13.35□□□□□ -0.27
SMARCD2-208ENST00000580054 LTV1Q96GA3 475 aaPredicted RBP13.35□□□□□ -0.27
SMARCD2-208ENST00000580054 CD2APQ9Y5K6 639 aa13.34□□□□□ -0.27
SMARCD2-208ENST00000580054 UBR3Q6ZT12 1888 aa13.33□□□□□ -0.27
SMARCD2-208ENST00000580054 CICQ96RK0 1608 aaPredicted RBP13.33□□□□□ -0.28
SMARCD2-208ENST00000580054 C4BP0C0L5 1744 aa13.33□□□□□ -0.28
SMARCD2-208ENST00000580054 WDR90Q96KV7 1748 aa13.32□□□□□ -0.28
SMARCD2-208ENST00000580054 IGSF1Q8N6C5 1336 aa13.32□□□□□ -0.28
SMARCD2-208ENST00000580054 ROCK2O75116 1388 aaKnown RBP13.32□□□□□ -0.28
SMARCD2-208ENST00000580054 USP47Q96K76 1375 aa13.32□□□□□ -0.28
SMARCD2-208ENST00000580054 AMIGO3Q86WK7 504 aa13.31□□□□□ -0.28
SMARCD2-208ENST00000580054 ITGB4P16144 1822 aa13.31□□□□□ -0.28
SMARCD2-208ENST00000580054 EDC4Q6P2E9 1401 aaKnown RBP13.3□□□□□ -0.28
SMARCD2-208ENST00000580054 KIAA1551Q9HCM1 1747 aa13.3□□□□□ -0.28
SMARCD2-208ENST00000580054 SMIM5Q71RC9 77 aa13.3□□□□□ -0.28
SMARCD2-208ENST00000580054 IP6K1Q92551 441 aa13.3□□□□□ -0.28
SMARCD2-208ENST00000580054 L3MBTL2Q969R5 705 aa13.3□□□□□ -0.28
SMARCD2-208ENST00000580054 ZCRB1Q8TBF4 217 aaKnown RBP13.29□□□□□ -0.28
SMARCD2-208ENST00000580054 A0A1W2PP64 1363 aa13.29□□□□□ -0.28
SMARCD2-208ENST00000580054 N4BP2Q86UW6 1770 aaPredicted RBP13.28□□□□□ -0.28
SMARCD2-208ENST00000580054 APLP1P51693 650 aa13.28□□□□□ -0.28
SMARCD2-208ENST00000580054 DNAJC5GQ8N7S2 189 aa13.28□□□□□ -0.28
SMARCD2-208ENST00000580054 TMC1Q8TDI8 760 aa13.28□□□□□ -0.28
SMARCD2-208ENST00000580054 PALLDQ8WX93 1383 aa13.28□□□□□ -0.28
SMARCD2-208ENST00000580054 FBLN1P23142 703 aa13.27□□□□□ -0.29
SMARCD2-208ENST00000580054 SLC12A5Q9H2X9 1139 aa13.27□□□□□ -0.29
SMARCD2-208ENST00000580054 MAP3K19Q56UN5 1328 aa13.27□□□□□ -0.29
SMARCD2-208ENST00000580054 MAP2P11137 1827 aaKnown RBP13.27□□□□□ -0.29
SMARCD2-208ENST00000580054 KIF13BQ9NQT8 1826 aa13.27□□□□□ -0.29
SMARCD2-208ENST00000580054 PHF14O94880 888 aa13.26□□□□□ -0.29
SMARCD2-208ENST00000580054 HOXC9P31274 260 aa13.26□□□□□ -0.29
SMARCD2-208ENST00000580054 USHBP1Q8N6Y0 703 aa13.26□□□□□ -0.29
SMARCD2-208ENST00000580054 CAPN15O75808 1086 aa13.25□□□□□ -0.29
SMARCD2-208ENST00000580054 HDGFL2Q7Z4V5 671 aaPredicted RBP13.25□□□□□ -0.29
SMARCD2-208ENST00000580054 PXDNLA1KZ92 1463 aa13.24□□□□□ -0.29
SMARCD2-208ENST00000580054 HTRA3P83110 453 aa13.24□□□□□ -0.29
SMARCD2-208ENST00000580054 COL13A1Q5TAT6 717 aaPredicted RBP13.24□□□□□ -0.29
SMARCD2-208ENST00000580054 FLAD1Q8NFF5 587 aa13.24□□□□□ -0.29
SMARCD2-208ENST00000580054 BRCA1P38398 1863 aaKnown RBP13.24□□□□□ -0.29
SMARCD2-208ENST00000580054 AK7Q96M32 723 aa13.23□□□□□ -0.29
SMARCD2-208ENST00000580054 NMRK2Q9NPI5 230 aa13.23□□□□□ -0.29
SMARCD2-208ENST00000580054 PKD1L3Q7Z443 1732 aa13.22□□□□□ -0.29
SMARCD2-208ENST00000580054 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.22□□□□□ -0.29
SMARCD2-208ENST00000580054 TOMM70O94826 608 aa13.22□□□□□ -0.29
SMARCD2-208ENST00000580054 AMPHP49418 695 aa13.22□□□□□ -0.29
SMARCD2-208ENST00000580054 NBPF6Q5VWK0 638 aa13.22□□□□□ -0.29
SMARCD2-208ENST00000580054 MPRIPQ6WCQ1 1025 aa13.22□□□□□ -0.29
SMARCD2-208ENST00000580054 NBPF4Q96M43 638 aa13.22□□□□□ -0.29
SMARCD2-208ENST00000580054 PCNTO95613 3336 aa13.21□□□□□ -0.3
SMARCD2-208ENST00000580054 RTL1A6NKG5 1358 aa13.2□□□□□ -0.3
SMARCD2-208ENST00000580054 SIN3AQ96ST3 1273 aa13.2□□□□□ -0.3
SMARCD2-208ENST00000580054 TERF2IPQ9NYB0 399 aa13.2□□□□□ -0.3
SMARCD2-208ENST00000580054 PCDH11XQ9BZA7 1347 aa13.19□□□□□ -0.3
SMARCD2-208ENST00000580054 PCDH11YQ9BZA8 1340 aa13.19□□□□□ -0.3
SMARCD2-208ENST00000580054 RRS1Q15050 365 aaKnown RBP13.19□□□□□ -0.3
SMARCD2-208ENST00000580054 LINC00116Q8NCU8 138 aa13.19□□□□□ -0.3
SMARCD2-208ENST00000580054 RAPGEF4Q8WZA2 1011 aa13.19□□□□□ -0.3
SMARCD2-208ENST00000580054 KLRG1Q96E93 195 aa13.19□□□□□ -0.3
SMARCD2-208ENST00000580054 COG3Q96JB2 828 aa13.19□□□□□ -0.3
SMARCD2-208ENST00000580054 NSD3Q9BZ95 1437 aa13.19□□□□□ -0.3
SMARCD2-208ENST00000580054 ARFGEF1Q9Y6D6 1849 aa13.18□□□□□ -0.3
SMARCD2-208ENST00000580054 CGNL1Q0VF96 1302 aa13.18□□□□□ -0.3
SMARCD2-208ENST00000580054 CYP27B1O15528 508 aa13.18□□□□□ -0.3
SMARCD2-208ENST00000580054 BCS1LQ9Y276 419 aa13.18□□□□□ -0.3
SMARCD2-208ENST00000580054 C10orf71Q711Q0 1435 aa13.17□□□□□ -0.3
SMARCD2-208ENST00000580054 SMG6Q86US8 1419 aaKnown RBP13.17□□□□□ -0.3
SMARCD2-208ENST00000580054 MMP10P09238 476 aa13.17□□□□□ -0.3
SMARCD2-208ENST00000580054 TATP17735 454 aaPredicted RBP13.17□□□□□ -0.3
SMARCD2-208ENST00000580054 SSFA2P28290 1259 aa13.17□□□□□ -0.3
SMARCD2-208ENST00000580054 JMYQ8N9B5 988 aa13.17□□□□□ -0.3
SMARCD2-208ENST00000580054 C4AP0C0L4 1744 aa13.16□□□□□ -0.3
SMARCD2-208ENST00000580054 TNS4Q8IZW8 715 aa13.16□□□□□ -0.3
SMARCD2-208ENST00000580054 PIGBQ92521 554 aa13.16□□□□□ -0.3
SMARCD2-208ENST00000580054 KCPQ6ZWJ8 1503 aa13.16□□□□□ -0.3
SMARCD2-208ENST00000580054 KIF20BQ96Q89 1820 aa13.16□□□□□ -0.3
SMARCD2-208ENST00000580054 A0A0G2JLW4 131 aa13.15□□□□□ -0.3
SMARCD2-208ENST00000580054 GNPATO15228 680 aa13.15□□□□□ -0.3
SMARCD2-208ENST00000580054 NEUROD1Q13562 356 aa13.15□□□□□ -0.3
SMARCD2-208ENST00000580054 ITPK1Q13572 414 aa13.15□□□□□ -0.3
SMARCD2-208ENST00000580054 ARHGAP27Q6ZUM4 889 aa13.15□□□□□ -0.3
SMARCD2-208ENST00000580054 RBM46Q8TBY0 533 aaKnown RBP13.15□□□□□ -0.3
SMARCD2-208ENST00000580054 SMARCC1Q92922 1105 aaPredicted RBP13.15□□□□□ -0.3
SMARCD2-208ENST00000580054 CARD11Q9BXL7 1154 aa13.15□□□□□ -0.3
SMARCD2-208ENST00000580054 TNRC6CQ9HCJ0 1690 aaKnown RBP13.15□□□□□ -0.31
SMARCD2-208ENST00000580054 LOC102724428A0A0B4J2F2 783 aa13.14□□□□□ -0.31
SMARCD2-208ENST00000580054 PRELPP51888 382 aa13.14□□□□□ -0.31
SMARCD2-208ENST00000580054 SIK1P57059 783 aa13.14□□□□□ -0.31
SMARCD2-208ENST00000580054 SBF1O95248 1867 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms