RNA–Protein interactions for RNA: ENST00000579339.5

LINC00271-205, long intergenic non-protein coding RNA 271, humanhuman

TSL 1 (best)

Gene LINC00271, Length 397 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00271-205ENST00000579339 NUP188Q5SRE5 1749 aa36.74■■■■□ 3.47
LINC00271-205ENST00000579339 PLSCR1O15162 318 aa36.74■■■■□ 3.47
LINC00271-205ENST00000579339 NHSQ6T4R5 1651 aa36.73■■■■□ 3.47
LINC00271-205ENST00000579339 TATP17735 454 aaPredicted RBP36.71■■■■□ 3.47
LINC00271-205ENST00000579339 AMER1Q5JTC6 1135 aaPredicted RBP36.71■■■■□ 3.47
LINC00271-205ENST00000579339 SHANK3Q9BYB0 1731 aa36.7■■■■□ 3.47
LINC00271-205ENST00000579339 EYA1Q99502 592 aa36.68■■■■□ 3.46
LINC00271-205ENST00000579339 RGPD3A6NKT7 1758 aaPredicted RBP36.68■■■■□ 3.46
LINC00271-205ENST00000579339 RGPD4Q7Z3J3 1758 aa36.68■■■■□ 3.46
LINC00271-205ENST00000579339 KAT6BQ8WYB5 2073 aa36.67■■■■□ 3.46
LINC00271-205ENST00000579339 EIF4A2Q14240 407 aaKnown RBP36.67■■■■□ 3.46
LINC00271-205ENST00000579339 PROM2Q8N271 834 aa36.66■■■■□ 3.46
LINC00271-205ENST00000579339 NCAPD2Q15021 1401 aa36.65■■■■□ 3.46
LINC00271-205ENST00000579339 PER1O15534 1290 aaPredicted RBP36.64■■■■□ 3.46
LINC00271-205ENST00000579339 NBPF14Q5TI25 921 aa36.64■■■■□ 3.46
LINC00271-205ENST00000579339 TXNRD1Q16881 649 aa36.61■■■■□ 3.45
LINC00271-205ENST00000579339 BTAF1O14981 1849 aa36.6■■■■□ 3.45
LINC00271-205ENST00000579339 CC2D1BQ5T0F9 858 aaKnown RBP36.6■■■■□ 3.45
LINC00271-205ENST00000579339 SYTL4Q96C24 671 aaPredicted RBP36.6■■■■□ 3.45
LINC00271-205ENST00000579339 ANO8Q9HCE9 1232 aaPredicted RBP36.59■■■■□ 3.45
LINC00271-205ENST00000579339 DOT1LQ8TEK3 1739 aa36.59■■■■□ 3.45
LINC00271-205ENST00000579339 PRIM1P49642 420 aaKnown RBP36.58■■■■□ 3.45
LINC00271-205ENST00000579339 CNGB1Q14028 1251 aaPredicted RBP36.58■■■■□ 3.45
LINC00271-205ENST00000579339 PCDH11XQ9BZA7 1347 aa36.58■■■■□ 3.45
LINC00271-205ENST00000579339 PCDH11YQ9BZA8 1340 aa36.58■■■■□ 3.45
LINC00271-205ENST00000579339 CYP27B1O15528 508 aa36.54■■■■□ 3.44
LINC00271-205ENST00000579339 PKD1L3Q7Z443 1732 aa36.51■■■■□ 3.44
LINC00271-205ENST00000579339 IGSF1Q8N6C5 1336 aa36.51■■■■□ 3.43
LINC00271-205ENST00000579339 SPG7Q9UQ90 795 aa36.48■■■■□ 3.43
LINC00271-205ENST00000579339 LRP5O75197 1615 aa36.48■■■■□ 3.43
LINC00271-205ENST00000579339 MTHFSP49914 203 aa36.46■■■■□ 3.43
LINC00271-205ENST00000579339 NPC1L1Q9UHC9 1359 aa36.44■■■■□ 3.42
LINC00271-205ENST00000579339 LRRC4BQ9NT99 713 aa36.44■■■■□ 3.42
LINC00271-205ENST00000579339 STK32BQ9NY57 414 aa36.44■■■■□ 3.42
LINC00271-205ENST00000579339 AEBP1Q8IUX7 1158 aa36.43■■■■□ 3.42
LINC00271-205ENST00000579339 IL13P35225 146 aa36.42■■■■□ 3.42
LINC00271-205ENST00000579339 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP36.42■■■■□ 3.42
LINC00271-205ENST00000579339 TOGARAM1Q9Y4F4 1720 aa36.4■■■■□ 3.42
LINC00271-205ENST00000579339 KCNQ4P56696 695 aa36.4■■■■□ 3.42
LINC00271-205ENST00000579339 SLC15A2Q16348 729 aa36.4■■■■□ 3.42
LINC00271-205ENST00000579339 PDGFDQ9GZP0 370 aaPredicted RBP36.4■■■■□ 3.42
LINC00271-205ENST00000579339 MPRIPQ6WCQ1 1025 aa36.38■■■■□ 3.41
LINC00271-205ENST00000579339 PAPPAQ13219 1627 aa36.37■■■■□ 3.41
LINC00271-205ENST00000579339 PHKG2P15735 406 aa36.37■■■■□ 3.41
LINC00271-205ENST00000579339 NKX1-1Q15270 411 aaPredicted RBP36.37■■■■□ 3.41
LINC00271-205ENST00000579339 SULT6B1Q6IMI4 303 aa36.37■■■■□ 3.41
LINC00271-205ENST00000579339 IFNL2Q8IZJ0 200 aa36.36■■■■□ 3.41
LINC00271-205ENST00000579339 SLC27A3Q5K4L6 730 aa36.35■■■■□ 3.41
LINC00271-205ENST00000579339 ZNF827Q17R98 1081 aa36.34■■■■□ 3.41
LINC00271-205ENST00000579339 LY75O60449 1722 aa36.31■■■■□ 3.4
LINC00271-205ENST00000579339 PLEKHG2Q9H7P9 1386 aa36.31■■■■□ 3.4
LINC00271-205ENST00000579339 CASZ1Q86V15 1759 aa36.31■■■■□ 3.4
LINC00271-205ENST00000579339 PLEKHO1Q53GL0 409 aaPredicted RBP36.31■■■■□ 3.4
LINC00271-205ENST00000579339 CCNL1Q9UK58 526 aaPredicted RBP36.3■■■■□ 3.4
LINC00271-205ENST00000579339 ITGB4P16144 1822 aa36.29■■■■□ 3.4
LINC00271-205ENST00000579339 KDRP35968 1356 aa36.29■■■■□ 3.4
LINC00271-205ENST00000579339 PIGBQ92521 554 aa36.29■■■■□ 3.4
LINC00271-205ENST00000579339 DIAPH1O60610 1272 aaKnown RBP36.28■■■■□ 3.4
LINC00271-205ENST00000579339 ZNF530Q6P9A1 599 aaPredicted RBP36.28■■■■□ 3.4
LINC00271-205ENST00000579339 PALLDQ8WX93 1383 aa36.27■■■■□ 3.4
LINC00271-205ENST00000579339 ZBTB7AO95365 584 aa36.27■■■■□ 3.4
LINC00271-205ENST00000579339 SPON1Q9HCB6 807 aa36.27■■■■□ 3.4
LINC00271-205ENST00000579339 HMOX1P09601 288 aa36.26■■■■□ 3.4
LINC00271-205ENST00000579339 AMOTQ4VCS5 1084 aa36.26■■■■□ 3.4
LINC00271-205ENST00000579339 AKT1S1Q96B36 256 aa36.26■■■■□ 3.4
LINC00271-205ENST00000579339 COL3A1P02461 1466 aaPredicted RBP36.24■■■■□ 3.39
LINC00271-205ENST00000579339 TMOD3Q9NYL9 352 aa36.24■■■■□ 3.39
LINC00271-205ENST00000579339 KDM6AO15550 1401 aaPredicted RBP36.19■■■■□ 3.38
LINC00271-205ENST00000579339 SMARCC1Q92922 1105 aaPredicted RBP36.19■■■■□ 3.38
LINC00271-205ENST00000579339 ATF5Q9Y2D1 282 aaPredicted RBP36.19■■■■□ 3.38
LINC00271-205ENST00000579339 HSP90AB1P08238 724 aaKnown RBP36.18■■■■□ 3.38
LINC00271-205ENST00000579339 C1orf141Q5JVX7 400 aa36.18■■■■□ 3.38
LINC00271-205ENST00000579339 DCAF5Q96JK2 942 aa36.18■■■■□ 3.38
LINC00271-205ENST00000579339 TFCP2L1Q9NZI6 479 aa36.17■■■■□ 3.38
LINC00271-205ENST00000579339 ASAP1Q9ULH1 1129 aa36.17■■■■□ 3.38
LINC00271-205ENST00000579339 U2SURPO15042 1029 aaKnown RBP36.16■■■■□ 3.38
LINC00271-205ENST00000579339 PPP2R1AP30153 589 aa36.15■■■■□ 3.38
LINC00271-205ENST00000579339 PPP1R1BQ9UD71 204 aaPredicted RBP36.15■■■■□ 3.38
LINC00271-205ENST00000579339 PNPLA7Q6ZV29 1317 aa36.14■■■■□ 3.38
LINC00271-205ENST00000579339 ERVV-2B6SEH9 535 aa36.13■■■■□ 3.37
LINC00271-205ENST00000579339 MTFR1LQ9H019 292 aa36.12■■■■□ 3.37
LINC00271-205ENST00000579339 ATG3Q9NT62 314 aa36.12■■■■□ 3.37
LINC00271-205ENST00000579339 TUBGCP6Q96RT7 1819 aa36.12■■■■□ 3.37
LINC00271-205ENST00000579339 C5P01031 1676 aa36.11■■■■□ 3.37
LINC00271-205ENST00000579339 PTGER2P43116 358 aa36.11■■■■□ 3.37
LINC00271-205ENST00000579339 CFAP53Q96M91 514 aa36.1■■■■□ 3.37
LINC00271-205ENST00000579339 LOC102724428A0A0B4J2F2 783 aa36.09■■■■□ 3.37
LINC00271-205ENST00000579339 SIK1P57059 783 aa36.09■■■■□ 3.37
LINC00271-205ENST00000579339 CABP4P57796 275 aa36.09■■■■□ 3.37
LINC00271-205ENST00000579339 MTHFSDQ2M296 383 aaKnown RBP36.07■■■■□ 3.36
LINC00271-205ENST00000579339 AKAP4Q5JQC9 854 aa36.07■■■■□ 3.36
LINC00271-205ENST00000579339 QSER1Q2KHR3 1735 aa36.07■■■■□ 3.36
LINC00271-205ENST00000579339 TAF1LQ8IZX4 1826 aa36.06■■■■□ 3.36
LINC00271-205ENST00000579339 DDX10Q13206 875 aaKnown RBP36.02■■■■□ 3.36
LINC00271-205ENST00000579339 ITPK1Q13572 414 aa36.02■■■■□ 3.36
LINC00271-205ENST00000579339 NFATC2IPQ8NCF5 419 aa36.02■■■■□ 3.36
LINC00271-205ENST00000579339 LINC00116Q8NCU8 138 aa36.02■■■■□ 3.36
LINC00271-205ENST00000579339 SGIP1Q9BQI5 828 aa36.02■■■■□ 3.36
LINC00271-205ENST00000579339 C4BP0C0L5 1744 aa36.01■■■■□ 3.36
LINC00271-205ENST00000579339 MSH5O43196 834 aa36.01■■■■□ 3.36
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms