RNA–Protein interactions for RNA: ENST00000578709.5

ERBB2-209, Transcript of erb-b2 receptor tyrosine kinase 2, human

TSL 4

Gene ERBB2, Length 559 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ERBB2-209	ENST00000578709	ZCRB1	Q8TBF4	217 aa	Known RBP	31.94	■■■□□ 2.7
ERBB2-209	ENST00000578709	KDR	P35968	1356 aa		31.94	■■■□□ 2.7
ERBB2-209	ENST00000578709	SHANK3	Q9BYB0	1731 aa		31.93	■■■□□ 2.7
ERBB2-209	ENST00000578709	PRKRIP1	Q9H875	184 aa	Predicted RBP	31.92	■■■□□ 2.7
ERBB2-209	ENST00000578709	CCDC125	Q86Z20	511 aa		31.91	■■■□□ 2.7
ERBB2-209	ENST00000578709	PKD1L3	Q7Z443	1732 aa		31.91	■■■□□ 2.7
ERBB2-209	ENST00000578709	AEBP1	Q8IUX7	1158 aa		31.9	■■■□□ 2.7
ERBB2-209	ENST00000578709	SULT6B1	Q6IMI4	303 aa		31.89	■■■□□ 2.7
ERBB2-209	ENST00000578709	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	31.89	■■■□□ 2.7
ERBB2-209	ENST00000578709	MYBBP1A	Q9BQG0	1328 aa	Known RBP	31.89	■■■□□ 2.7
ERBB2-209	ENST00000578709	SBF2	Q86WG5	1849 aa		31.86	■■■□□ 2.69
ERBB2-209	ENST00000578709	DDX54	Q8TDD1	881 aa	Known RBP	31.86	■■■□□ 2.69
ERBB2-209	ENST00000578709	PCDH11X	Q9BZA7	1347 aa		31.85	■■■□□ 2.69
ERBB2-209	ENST00000578709	PCDH11Y	Q9BZA8	1340 aa		31.85	■■■□□ 2.69
ERBB2-209	ENST00000578709	SPG7	Q9UQ90	795 aa		31.84	■■■□□ 2.69
ERBB2-209	ENST00000578709	NUDC	Q9Y266	331 aa		31.83	■■■□□ 2.69
ERBB2-209	ENST00000578709	U2SURP	O15042	1029 aa	Known RBP	31.82	■■■□□ 2.68
ERBB2-209	ENST00000578709	TRIM37	O94972	964 aa		31.82	■■■□□ 2.68
ERBB2-209	ENST00000578709	HMOX1	P09601	288 aa		31.81	■■■□□ 2.68
ERBB2-209	ENST00000578709	TNS1	Q9HBL0	1735 aa	Known RBP	31.8	■■■□□ 2.68
ERBB2-209	ENST00000578709	CYP27B1	O15528	508 aa		31.8	■■■□□ 2.68
ERBB2-209	ENST00000578709	SF3B2	Q13435	895 aa	Known RBP	31.78	■■■□□ 2.68
ERBB2-209	ENST00000578709	AMOT	Q4VCS5	1084 aa		31.78	■■■□□ 2.68
ERBB2-209	ENST00000578709	PLEKHO1	Q53GL0	409 aa	Predicted RBP	31.78	■■■□□ 2.68
ERBB2-209	ENST00000578709	BCL11B	Q9C0K0	894 aa	Predicted RBP	31.76	■■■□□ 2.67
ERBB2-209	ENST00000578709	NHS	Q6T4R5	1651 aa		31.76	■■■□□ 2.67
ERBB2-209	ENST00000578709	KAT6B	Q8WYB5	2073 aa		31.75	■■■□□ 2.67
ERBB2-209	ENST00000578709	NKX1-1	Q15270	411 aa	Predicted RBP	31.74	■■■□□ 2.67
ERBB2-209	ENST00000578709	U2AF1L5	P0DN76	240 aa	Predicted RBP	31.73	■■■□□ 2.67
ERBB2-209	ENST00000578709	U2AF1	Q01081	240 aa	Known RBP eCLIP	31.73	■■■□□ 2.67
ERBB2-209	ENST00000578709	IFNL2	Q8IZJ0	200 aa		31.73	■■■□□ 2.67
ERBB2-209	ENST00000578709	PHKG2	P15735	406 aa		31.72	■■■□□ 2.67
ERBB2-209	ENST00000578709	PTF1A	Q7RTS3	328 aa		31.72	■■■□□ 2.67
ERBB2-209	ENST00000578709	RSPH6A	Q9H0K4	717 aa		31.72	■■■□□ 2.67
ERBB2-209	ENST00000578709	ANP32C	O43423	234 aa		31.71	■■■□□ 2.67
ERBB2-209	ENST00000578709	ACSBG1	Q96GR2	724 aa		31.71	■■■□□ 2.67
ERBB2-209	ENST00000578709	DOT1L	Q8TEK3	1739 aa		31.71	■■■□□ 2.67
ERBB2-209	ENST00000578709	KCNQ2	O43526	872 aa		31.7	■■■□□ 2.67
ERBB2-209	ENST00000578709	FCHSD2	O94868	740 aa		31.7	■■■□□ 2.67
ERBB2-209	ENST00000578709	BAG6	P46379	1132 aa		31.7	■■■□□ 2.67
ERBB2-209	ENST00000578709	ZNF530	Q6P9A1	599 aa	Predicted RBP	31.7	■■■□□ 2.67
ERBB2-209	ENST00000578709	APBA3	O96018	575 aa		31.68	■■■□□ 2.66
ERBB2-209	ENST00000578709	DEFB132	Q7Z7B7	95 aa		31.68	■■■□□ 2.66
ERBB2-209	ENST00000578709	PRKAR2B	P31323	418 aa		31.66	■■■□□ 2.66
ERBB2-209	ENST00000578709	TOGARAM1	Q9Y4F4	1720 aa		31.66	■■■□□ 2.66
ERBB2-209	ENST00000578709	PRIM1	P49642	420 aa	Known RBP	31.65	■■■□□ 2.66
ERBB2-209	ENST00000578709	HSP90AB1	P08238	724 aa	Known RBP	31.64	■■■□□ 2.66
ERBB2-209	ENST00000578709	MTHFSD	Q2M296	383 aa	Known RBP	31.64	■■■□□ 2.66
ERBB2-209	ENST00000578709	C1orf141	Q5JVX7	400 aa		31.64	■■■□□ 2.66
ERBB2-209	ENST00000578709	BTAF1	O14981	1849 aa		31.63	■■■□□ 2.65
ERBB2-209	ENST00000578709	RGPD3	A6NKT7	1758 aa	Predicted RBP	31.62	■■■□□ 2.65
ERBB2-209	ENST00000578709	EN1	Q05925	392 aa	Predicted RBP	31.62	■■■□□ 2.65
ERBB2-209	ENST00000578709	RGPD4	Q7Z3J3	1758 aa		31.62	■■■□□ 2.65
ERBB2-209	ENST00000578709	CAMKK2	Q96RR4	588 aa		31.62	■■■□□ 2.65
ERBB2-209	ENST00000578709	PLSCR1	O15162	318 aa		31.61	■■■□□ 2.65
ERBB2-209	ENST00000578709	AKAP4	Q5JQC9	854 aa		31.61	■■■□□ 2.65
ERBB2-209	ENST00000578709	DCAF5	Q96JK2	942 aa		31.61	■■■□□ 2.65
ERBB2-209	ENST00000578709	PHACTR3	Q96KR7	559 aa		31.61	■■■□□ 2.65
ERBB2-209	ENST00000578709	SYTL4	Q96C24	671 aa	Predicted RBP	31.6	■■■□□ 2.65
ERBB2-209	ENST00000578709	ITGB4	P16144	1822 aa		31.6	■■■□□ 2.65
ERBB2-209	ENST00000578709	KDM6A	O15550	1401 aa	Predicted RBP	31.59	■■■□□ 2.65
ERBB2-209	ENST00000578709	GAS2L2	Q8NHY3	880 aa		31.59	■■■□□ 2.65
ERBB2-209	ENST00000578709	ERVV-2	B6SEH9	535 aa		31.56	■■■□□ 2.64
ERBB2-209	ENST00000578709	EZH2	Q15910	746 aa	Known RBP	31.56	■■■□□ 2.64
ERBB2-209	ENST00000578709	PLEKHF1	Q96S99	279 aa		31.56	■■■□□ 2.64
ERBB2-209	ENST00000578709	PNN	Q9H307	717 aa	Known RBP	31.55	■■■□□ 2.64
ERBB2-209	ENST00000578709	SCN11A	Q9UI33	1791 aa		31.54	■■■□□ 2.64
ERBB2-209	ENST00000578709	WDR43	Q15061	677 aa	Known RBP eCLIP	31.54	■■■□□ 2.64
ERBB2-209	ENST00000578709	CCDC184	Q52MB2	194 aa		31.54	■■■□□ 2.64
ERBB2-209	ENST00000578709	MPRIP	Q6WCQ1	1025 aa		31.54	■■■□□ 2.64
ERBB2-209	ENST00000578709	ADAMTS7	Q9UKP4	1686 aa		31.54	■■■□□ 2.64
ERBB2-209	ENST00000578709	RREB1	Q92766	1687 aa		31.53	■■■□□ 2.64
ERBB2-209	ENST00000578709	PIGB	Q92521	554 aa		31.52	■■■□□ 2.64
ERBB2-209	ENST00000578709	MAP3K5	Q99683	1374 aa		31.52	■■■□□ 2.64
ERBB2-209	ENST00000578709	TMOD3	Q9NYL9	352 aa		31.51	■■■□□ 2.63
ERBB2-209	ENST00000578709	VIRMA	Q69YN4	1812 aa	Known RBP	31.49	■■■□□ 2.63
ERBB2-209	ENST00000578709	GNAT3	A8MTJ3	354 aa		31.49	■■■□□ 2.63
ERBB2-209	ENST00000578709	RNMT	O43148	476 aa	Known RBP	31.49	■■■□□ 2.63
ERBB2-209	ENST00000578709	NEFM	P07197	916 aa		31.49	■■■□□ 2.63
ERBB2-209	ENST00000578709	PROM2	Q8N271	834 aa		31.49	■■■□□ 2.63
ERBB2-209	ENST00000578709	ADAMTS8	Q9UP79	889 aa		31.49	■■■□□ 2.63
ERBB2-209	ENST00000578709	LGR6	Q9HBX8	967 aa		31.48	■■■□□ 2.63
ERBB2-209	ENST00000578709	MRC1	P22897	1456 aa		31.46	■■■□□ 2.63
ERBB2-209	ENST00000578709	CABP4	P57796	275 aa		31.46	■■■□□ 2.63
ERBB2-209	ENST00000578709	TXNRD1	Q16881	649 aa		31.46	■■■□□ 2.63
ERBB2-209	ENST00000578709	MRS2	Q9HD23	443 aa		31.46	■■■□□ 2.63
ERBB2-209	ENST00000578709	LY75	O60449	1722 aa		31.46	■■■□□ 2.63
ERBB2-209	ENST00000578709	NUP188	Q5SRE5	1749 aa		31.46	■■■□□ 2.63
ERBB2-209	ENST00000578709	MAPK8IP3	Q9UPT6	1336 aa		31.46	■■■□□ 2.63
ERBB2-209	ENST00000578709	IL17RE	Q8NFR9	667 aa		31.43	■■■□□ 2.62
ERBB2-209	ENST00000578709	SMARCC1	Q92922	1105 aa	Predicted RBP	31.43	■■■□□ 2.62
ERBB2-209	ENST00000578709	SLC52A2	Q9HAB3	445 aa		31.43	■■■□□ 2.62
ERBB2-209	ENST00000578709	NFE2L2	Q16236	605 aa		31.42	■■■□□ 2.62
ERBB2-209	ENST00000578709	NFATC2IP	Q8NCF5	419 aa		31.42	■■■□□ 2.62
ERBB2-209	ENST00000578709	PNISR	Q8TF01	805 aa	Known RBP	31.42	■■■□□ 2.62
ERBB2-209	ENST00000578709	CEMIP	Q8WUJ3	1361 aa		31.42	■■■□□ 2.62
ERBB2-209	ENST00000578709	PALLD	Q8WX93	1383 aa		31.42	■■■□□ 2.62
ERBB2-209	ENST00000578709	HTATSF1	O43719	755 aa	Known RBP	31.41	■■■□□ 2.62
ERBB2-209	ENST00000578709	DLG5	Q8TDM6	1919 aa		31.41	■■■□□ 2.62
ERBB2-209	ENST00000578709	SLC27A3	Q5K4L6	730 aa		31.4	■■■□□ 2.62

Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms