RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 GIGYF1O75420 1035 aaPredicted RBP13.93□□□□□ -0.18
SS18-210ENST00000578700 HDGFL2Q7Z4V5 671 aaPredicted RBP13.93□□□□□ -0.18
SS18-210ENST00000578700 MAP3K5Q99683 1374 aa13.93□□□□□ -0.18
SS18-210ENST00000578700 COL24A1Q17RW2 1714 aa13.93□□□□□ -0.18
SS18-210ENST00000578700 ANP32CO43423 234 aa13.92□□□□□ -0.18
SS18-210ENST00000578700 AKT1S1Q96B36 256 aa13.92□□□□□ -0.18
SS18-210ENST00000578700 SLC12A5Q9H2X9 1139 aa13.92□□□□□ -0.18
SS18-210ENST00000578700 WASHC2AQ641Q2 1341 aa13.91□□□□□ -0.18
SS18-210ENST00000578700 PRIM1P49642 420 aaKnown RBP13.91□□□□□ -0.18
SS18-210ENST00000578700 SLC16A10Q8TF71 515 aa13.91□□□□□ -0.18
SS18-210ENST00000578700 SLC27A3Q5K4L6 730 aa13.9□□□□□ -0.18
SS18-210ENST00000578700 NLGN2Q8NFZ4 835 aa13.9□□□□□ -0.18
SS18-210ENST00000578700 PNPLA7Q6ZV29 1317 aa13.9□□□□□ -0.19
SS18-210ENST00000578700 USP31Q70CQ4 1352 aa13.89□□□□□ -0.19
SS18-210ENST00000578700 SLC24A1O60721 1099 aa13.89□□□□□ -0.19
SS18-210ENST00000578700 TUBGCP6Q96RT7 1819 aa13.89□□□□□ -0.19
SS18-210ENST00000578700 ST20-MTHFSA0A0A6YYL1 179 aa13.88□□□□□ -0.19
SS18-210ENST00000578700 IP6K1Q92551 441 aa13.88□□□□□ -0.19
SS18-210ENST00000578700 FAM208AQ9UK61 1670 aaKnown RBP13.88□□□□□ -0.19
SS18-210ENST00000578700 KIF7Q2M1P5 1343 aa13.88□□□□□ -0.19
SS18-210ENST00000578700 FBLN1P23142 703 aa13.87□□□□□ -0.19
SS18-210ENST00000578700 SBNO2Q9Y2G9 1366 aa13.86□□□□□ -0.19
SS18-210ENST00000578700 AMPHP49418 695 aa13.86□□□□□ -0.19
SS18-210ENST00000578700 MSL1Q68DK7 614 aa13.86□□□□□ -0.19
SS18-210ENST00000578700 POLR3GLQ9BT43 218 aa13.86□□□□□ -0.19
SS18-210ENST00000578700 TERF2IPQ9NYB0 399 aa13.86□□□□□ -0.19
SS18-210ENST00000578700 CCNL1Q9UK58 526 aaPredicted RBP13.86□□□□□ -0.19
SS18-210ENST00000578700 ZCRB1Q8TBF4 217 aaKnown RBP13.85□□□□□ -0.19
SS18-210ENST00000578700 LY75O60449 1722 aa13.84□□□□□ -0.19
SS18-210ENST00000578700 GRIN3BO60391 1043 aa13.84□□□□□ -0.19
SS18-210ENST00000578700 YBX3P16989 372 aaKnown RBP eCLIP13.84□□□□□ -0.19
SS18-210ENST00000578700 TMF1P82094 1093 aa13.84□□□□□ -0.19
SS18-210ENST00000578700 CDCA8Q53HL2 280 aa13.84□□□□□ -0.19
SS18-210ENST00000578700 CD163L1Q9NR16 1453 aa13.83□□□□□ -0.2
SS18-210ENST00000578700 CENPBP07199 599 aaPredicted RBP13.83□□□□□ -0.2
SS18-210ENST00000578700 COL23A1Q86Y22 540 aaPredicted RBP13.83□□□□□ -0.2
SS18-210ENST00000578700 COG3Q96JB2 828 aa13.83□□□□□ -0.2
SS18-210ENST00000578700 DOT1LQ8TEK3 1739 aa13.82□□□□□ -0.2
SS18-210ENST00000578700 HOXC9P31274 260 aa13.82□□□□□ -0.2
SS18-210ENST00000578700 USHBP1Q8N6Y0 703 aa13.82□□□□□ -0.2
SS18-210ENST00000578700 ANKRD36BQ8N2N9 1353 aa13.82□□□□□ -0.2
SS18-210ENST00000578700 EDC4Q6P2E9 1401 aaKnown RBP13.81□□□□□ -0.2
SS18-210ENST00000578700 IFFO2Q5TF58 517 aa13.81□□□□□ -0.2
SS18-210ENST00000578700 ZNF526Q8TF50 670 aaPredicted RBP13.81□□□□□ -0.2
SS18-210ENST00000578700 MAP3K19Q56UN5 1328 aa13.81□□□□□ -0.2
SS18-210ENST00000578700 A0A1W2PP64 1363 aa13.81□□□□□ -0.2
SS18-210ENST00000578700 SHANK3Q9BYB0 1731 aa13.81□□□□□ -0.2
SS18-210ENST00000578700 CCER2I3L3R5 266 aa13.8□□□□□ -0.2
SS18-210ENST00000578700 WWC3Q9ULE0 1092 aa13.8□□□□□ -0.2
SS18-210ENST00000578700 RGPD2P0DJD1 1756 aa13.8□□□□□ -0.2
SS18-210ENST00000578700 RRS1Q15050 365 aaKnown RBP13.79□□□□□ -0.2
SS18-210ENST00000578700 NBPF6Q5VWK0 638 aa13.78□□□□□ -0.2
SS18-210ENST00000578700 RAPGEF4Q8WZA2 1011 aa13.78□□□□□ -0.2
SS18-210ENST00000578700 NBPF4Q96M43 638 aa13.78□□□□□ -0.2
SS18-210ENST00000578700 GPBP1L1Q9HC44 474 aaPredicted RBP13.78□□□□□ -0.2
SS18-210ENST00000578700 NSD2O96028 1365 aa13.77□□□□□ -0.21
SS18-210ENST00000578700 TATP17735 454 aaPredicted RBP13.77□□□□□ -0.21
SS18-210ENST00000578700 MPRIPQ6WCQ1 1025 aa13.77□□□□□ -0.21
SS18-210ENST00000578700 YTHDC1Q96MU7 727 aaKnown RBP13.77□□□□□ -0.21
SS18-210ENST00000578700 SMIM5Q71RC9 77 aa13.76□□□□□ -0.21
SS18-210ENST00000578700 TESK2Q96S53 571 aa13.76□□□□□ -0.21
SS18-210ENST00000578700 TAF1LQ8IZX4 1826 aa13.76□□□□□ -0.21
SS18-210ENST00000578700 ATP10DQ9P241 1426 aa13.75□□□□□ -0.21
SS18-210ENST00000578700 PHF14O94880 888 aa13.75□□□□□ -0.21
SS18-210ENST00000578700 GGNBP2Q9H3C7 697 aa13.75□□□□□ -0.21
SS18-210ENST00000578700 C5P01031 1676 aa13.75□□□□□ -0.21
SS18-210ENST00000578700 MEGF6O75095 1541 aa13.74□□□□□ -0.21
SS18-210ENST00000578700 FLAD1Q8NFF5 587 aa13.74□□□□□ -0.21
SS18-210ENST00000578700 AK7Q96M32 723 aa13.74□□□□□ -0.21
SS18-210ENST00000578700 PUS7Q96PZ0 661 aaKnown RBP13.74□□□□□ -0.21
SS18-210ENST00000578700 CD2APQ9Y5K6 639 aa13.74□□□□□ -0.21
SS18-210ENST00000578700 PALLDQ8WX93 1383 aa13.71□□□□□ -0.21
SS18-210ENST00000578700 CGNL1Q0VF96 1302 aa13.71□□□□□ -0.21
SS18-210ENST00000578700 FYB1O15117 783 aa13.71□□□□□ -0.21
SS18-210ENST00000578700 HSP90AB2PQ58FF8 381 aa13.71□□□□□ -0.21
SS18-210ENST00000578700 IGSF1Q8N6C5 1336 aa13.7□□□□□ -0.22
SS18-210ENST00000578700 PCDH11XQ9BZA7 1347 aa13.7□□□□□ -0.22
SS18-210ENST00000578700 PCDH11YQ9BZA8 1340 aa13.7□□□□□ -0.22
SS18-210ENST00000578700 HSPA6P17066 643 aa13.7□□□□□ -0.22
SS18-210ENST00000578700 HMGB2P26583 209 aaKnown RBP13.7□□□□□ -0.22
SS18-210ENST00000578700 PRKRIP1Q9H875 184 aaPredicted RBP13.7□□□□□ -0.22
SS18-210ENST00000578700 SMG6Q86US8 1419 aaKnown RBP13.7□□□□□ -0.22
SS18-210ENST00000578700 ITGB4P16144 1822 aa13.69□□□□□ -0.22
SS18-210ENST00000578700 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.69□□□□□ -0.22
SS18-210ENST00000578700 AMIGO3Q86WK7 504 aa13.69□□□□□ -0.22
SS18-210ENST00000578700 SMARCC1Q92922 1105 aaPredicted RBP13.69□□□□□ -0.22
SS18-210ENST00000578700 RTL1A6NKG5 1358 aa13.69□□□□□ -0.22
SS18-210ENST00000578700 PPM1GO15355 546 aaPredicted RBP13.68□□□□□ -0.22
SS18-210ENST00000578700 CYP27B1O15528 508 aa13.68□□□□□ -0.22
SS18-210ENST00000578700 PIGBQ92521 554 aa13.68□□□□□ -0.22
SS18-210ENST00000578700 UBR3Q6ZT12 1888 aa13.67□□□□□ -0.22
SS18-210ENST00000578700 RALBP1Q15311 655 aa13.66□□□□□ -0.22
SS18-210ENST00000578700 C4BP0C0L5 1744 aa13.66□□□□□ -0.22
SS18-210ENST00000578700 LOC102724428A0A0B4J2F2 783 aa13.65□□□□□ -0.22
SS18-210ENST00000578700 SIK1P57059 783 aa13.65□□□□□ -0.22
SS18-210ENST00000578700 LINC00116Q8NCU8 138 aa13.65□□□□□ -0.22
SS18-210ENST00000578700 KNSTRNQ9Y448 316 aa13.65□□□□□ -0.22
SS18-210ENST00000578700 ADCY9O60503 1353 aa13.65□□□□□ -0.22
SS18-210ENST00000578700 TOGARAM1Q9Y4F4 1720 aa13.64□□□□□ -0.23
SS18-210ENST00000578700 INSRP06213 1382 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 140.5 ms