RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 MAP3K19Q56UN5 1328 aa19.1■□□□□ 0.65
CCDC40-216ENST00000576241 YBX3P16989 372 aaKnown RBP eCLIP19.1■□□□□ 0.65
CCDC40-216ENST00000576241 AMPHP49418 695 aa19.1■□□□□ 0.65
CCDC40-216ENST00000576241 ZNF827Q17R98 1081 aa19.1■□□□□ 0.65
CCDC40-216ENST00000576241 GPBP1L1Q9HC44 474 aaPredicted RBP19.09■□□□□ 0.65
CCDC40-216ENST00000576241 GRIN3BO60391 1043 aa19.08■□□□□ 0.64
CCDC40-216ENST00000576241 POLD1P28340 1107 aa19.08■□□□□ 0.64
CCDC40-216ENST00000576241 HOXC9P31274 260 aa19.08■□□□□ 0.64
CCDC40-216ENST00000576241 GGNBP2Q9H3C7 697 aa19.07■□□□□ 0.64
CCDC40-216ENST00000576241 RTL1A6NKG5 1358 aa19.06■□□□□ 0.64
CCDC40-216ENST00000576241 FAM208AQ9UK61 1670 aaKnown RBP19.06■□□□□ 0.64
CCDC40-216ENST00000576241 FYB1O15117 783 aa19.06■□□□□ 0.64
CCDC40-216ENST00000576241 ACSBG1Q96GR2 724 aa19.06■□□□□ 0.64
CCDC40-216ENST00000576241 COL24A1Q17RW2 1714 aa19.05■□□□□ 0.64
CCDC40-216ENST00000576241 NHSQ6T4R5 1651 aa19.05■□□□□ 0.64
CCDC40-216ENST00000576241 FBLN1P23142 703 aa19.05■□□□□ 0.64
CCDC40-216ENST00000576241 SLC16A10Q8TF71 515 aa19.05■□□□□ 0.64
CCDC40-216ENST00000576241 ZNF526Q8TF50 670 aaPredicted RBP19.04■□□□□ 0.64
CCDC40-216ENST00000576241 RRS1Q15050 365 aaKnown RBP19.03■□□□□ 0.64
CCDC40-216ENST00000576241 DDX54Q8TDD1 881 aaKnown RBP19.03■□□□□ 0.64
CCDC40-216ENST00000576241 LRRC4BQ9NT99 713 aa19.03■□□□□ 0.64
CCDC40-216ENST00000576241 SMG6Q86US8 1419 aaKnown RBP19.02■□□□□ 0.64
CCDC40-216ENST00000576241 AKT1S1Q96B36 256 aa19.01■□□□□ 0.63
CCDC40-216ENST00000576241 QSER1Q2KHR3 1735 aa19■□□□□ 0.63
CCDC40-216ENST00000576241 BTAF1O14981 1849 aa19■□□□□ 0.63
CCDC40-216ENST00000576241 PNPLA7Q6ZV29 1317 aa19■□□□□ 0.63
CCDC40-216ENST00000576241 CAPN15O75808 1086 aa18.99■□□□□ 0.63
CCDC40-216ENST00000576241 NSD3Q9BZ95 1437 aa18.99■□□□□ 0.63
CCDC40-216ENST00000576241 ADCY9O60503 1353 aa18.98■□□□□ 0.63
CCDC40-216ENST00000576241 ZCRB1Q8TBF4 217 aaKnown RBP18.98■□□□□ 0.63
CCDC40-216ENST00000576241 CARD14Q9BXL6 1004 aa18.98■□□□□ 0.63
CCDC40-216ENST00000576241 KAT6BQ8WYB5 2073 aa18.97■□□□□ 0.63
CCDC40-216ENST00000576241 FLT4P35916 1363 aa18.97■□□□□ 0.63
CCDC40-216ENST00000576241 KIF24Q5T7B8 1368 aa18.97■□□□□ 0.63
CCDC40-216ENST00000576241 CCER1Q8TC90 406 aaPredicted RBP18.97■□□□□ 0.63
CCDC40-216ENST00000576241 RAPGEF4Q8WZA2 1011 aa18.97■□□□□ 0.63
CCDC40-216ENST00000576241 KIF20BQ96Q89 1820 aa18.97■□□□□ 0.63
CCDC40-216ENST00000576241 INSRP06213 1382 aa18.96■□□□□ 0.63
CCDC40-216ENST00000576241 MEGF6O75095 1541 aa18.96■□□□□ 0.63
CCDC40-216ENST00000576241 NBPF6Q5VWK0 638 aa18.96■□□□□ 0.63
CCDC40-216ENST00000576241 SYTL4Q96C24 671 aaPredicted RBP18.96■□□□□ 0.63
CCDC40-216ENST00000576241 NBPF4Q96M43 638 aa18.96■□□□□ 0.63
CCDC40-216ENST00000576241 CGNL1Q0VF96 1302 aa18.96■□□□□ 0.63
CCDC40-216ENST00000576241 TUBGCP6Q96RT7 1819 aa18.95■□□□□ 0.62
CCDC40-216ENST00000576241 USHBP1Q8N6Y0 703 aa18.95■□□□□ 0.62
CCDC40-216ENST00000576241 DNAJC5GQ8N7S2 189 aa18.95■□□□□ 0.62
CCDC40-216ENST00000576241 POLR3GLQ9BT43 218 aa18.95■□□□□ 0.62
CCDC40-216ENST00000576241 APLP1P51693 650 aa18.94■□□□□ 0.62
CCDC40-216ENST00000576241 HSP90AB2PQ58FF8 381 aa18.94■□□□□ 0.62
CCDC40-216ENST00000576241 COL13A1Q5TAT6 717 aaPredicted RBP18.94■□□□□ 0.62
CCDC40-216ENST00000576241 TATP17735 454 aaPredicted RBP18.93■□□□□ 0.62
CCDC40-216ENST00000576241 PRIM1P49642 420 aaKnown RBP18.93■□□□□ 0.62
CCDC40-216ENST00000576241 EIF4G2P78344 907 aaKnown RBP eCLIP18.93■□□□□ 0.62
CCDC40-216ENST00000576241 TFCP2L1Q9NZI6 479 aa18.93■□□□□ 0.62
CCDC40-216ENST00000576241 KIF3CO14782 793 aa18.92■□□□□ 0.62
CCDC40-216ENST00000576241 PPM1GO15355 546 aaPredicted RBP18.92■□□□□ 0.62
CCDC40-216ENST00000576241 SLC27A3Q5K4L6 730 aa18.92■□□□□ 0.62
CCDC40-216ENST00000576241 EMILIN1Q9Y6C2 1016 aa18.91■□□□□ 0.62
CCDC40-216ENST00000576241 RGPD2P0DJD1 1756 aa18.91■□□□□ 0.62
CCDC40-216ENST00000576241 KCNQ4P56696 695 aa18.9■□□□□ 0.62
CCDC40-216ENST00000576241 HSPA5P11021 654 aaKnown RBP18.89■□□□□ 0.61
CCDC40-216ENST00000576241 PCDH11XQ9BZA7 1347 aa18.89■□□□□ 0.61
CCDC40-216ENST00000576241 PCDH11YQ9BZA8 1340 aa18.89■□□□□ 0.61
CCDC40-216ENST00000576241 DOT1LQ8TEK3 1739 aa18.88■□□□□ 0.61
CCDC40-216ENST00000576241 NSD2O96028 1365 aa18.87■□□□□ 0.61
CCDC40-216ENST00000576241 MSH5O43196 834 aa18.86■□□□□ 0.61
CCDC40-216ENST00000576241 PRELPP51888 382 aa18.86■□□□□ 0.61
CCDC40-216ENST00000576241 WASHC2AQ641Q2 1341 aa18.85■□□□□ 0.61
CCDC40-216ENST00000576241 MSL1Q68DK7 614 aa18.84■□□□□ 0.61
CCDC40-216ENST00000576241 TNS4Q8IZW8 715 aa18.84■□□□□ 0.61
CCDC40-216ENST00000576241 CD2APQ9Y5K6 639 aa18.84■□□□□ 0.61
CCDC40-216ENST00000576241 COL23A1Q86Y22 540 aaPredicted RBP18.83■□□□□ 0.6
CCDC40-216ENST00000576241 CCNL1Q9UK58 526 aaPredicted RBP18.83■□□□□ 0.6
CCDC40-216ENST00000576241 TNNT2P45379 298 aaPredicted RBP18.82■□□□□ 0.6
CCDC40-216ENST00000576241 POLKQ9UBT6 870 aa18.82■□□□□ 0.6
CCDC40-216ENST00000576241 SPG7Q9UQ90 795 aa18.82■□□□□ 0.6
CCDC40-216ENST00000576241 ANKRD26Q9UPS8 1709 aa18.82■□□□□ 0.6
CCDC40-216ENST00000576241 CYP27B1O15528 508 aa18.81■□□□□ 0.6
CCDC40-216ENST00000576241 TOMM70O94826 608 aa18.81■□□□□ 0.6
CCDC40-216ENST00000576241 PANK3Q9H999 370 aa18.81■□□□□ 0.6
CCDC40-216ENST00000576241 WWC3Q9ULE0 1092 aa18.81■□□□□ 0.6
CCDC40-216ENST00000576241 NCAPD2Q15021 1401 aa18.81■□□□□ 0.6
CCDC40-216ENST00000576241 WDR90Q96KV7 1748 aa18.8■□□□□ 0.6
CCDC40-216ENST00000576241 EYA1Q99502 592 aa18.8■□□□□ 0.6
CCDC40-216ENST00000576241 HMGB2P26583 209 aaKnown RBP18.79■□□□□ 0.6
CCDC40-216ENST00000576241 MPRIPQ6WCQ1 1025 aa18.79■□□□□ 0.6
CCDC40-216ENST00000576241 LY75O60449 1722 aa18.79■□□□□ 0.6
CCDC40-216ENST00000576241 KLRG1Q96E93 195 aa18.78■□□□□ 0.6
CCDC40-216ENST00000576241 HTRA3P83110 453 aa18.77■□□□□ 0.6
CCDC40-216ENST00000576241 EIF4A2Q14240 407 aaKnown RBP18.77■□□□□ 0.6
CCDC40-216ENST00000576241 JMYQ8N9B5 988 aa18.77■□□□□ 0.6
CCDC40-216ENST00000576241 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.77■□□□□ 0.6
CCDC40-216ENST00000576241 PALLDQ8WX93 1383 aa18.77■□□□□ 0.6
CCDC40-216ENST00000576241 PKD1L3Q7Z443 1732 aa18.77■□□□□ 0.59
CCDC40-216ENST00000576241 SMARCC1Q92922 1105 aaPredicted RBP18.76■□□□□ 0.59
CCDC40-216ENST00000576241 IGSF1Q8N6C5 1336 aa18.75■□□□□ 0.59
CCDC40-216ENST00000576241 MAP2P11137 1827 aaKnown RBP18.75■□□□□ 0.59
CCDC40-216ENST00000576241 NKX1-1Q15270 411 aaPredicted RBP18.74■□□□□ 0.59
CCDC40-216ENST00000576241 MORC1Q86VD1 984 aa18.74■□□□□ 0.59
CCDC40-216ENST00000576241 KNSTRNQ9Y448 316 aa18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms