RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 MEGF6O75095 1541 aa12.83□□□□□ -0.36
CCDC40-214ENST00000575431 KDRP35968 1356 aa12.82□□□□□ -0.36
CCDC40-214ENST00000575431 RGPD1P0DJD0 1748 aa12.82□□□□□ -0.36
CCDC40-214ENST00000575431 UPF1Q92900 1129 aaKnown RBP eCLIP12.82□□□□□ -0.36
CCDC40-214ENST00000575431 COL3A1P02461 1466 aaPredicted RBP12.82□□□□□ -0.36
CCDC40-214ENST00000575431 SF3B2Q13435 895 aaKnown RBP12.81□□□□□ -0.36
CCDC40-214ENST00000575431 AMOTQ4VCS5 1084 aa12.81□□□□□ -0.36
CCDC40-214ENST00000575431 SULT6B1Q6IMI4 303 aa12.81□□□□□ -0.36
CCDC40-214ENST00000575431 MARCH10Q8NA82 808 aaPredicted RBP12.81□□□□□ -0.36
CCDC40-214ENST00000575431 PCDH11XQ9BZA7 1347 aa12.81□□□□□ -0.36
CCDC40-214ENST00000575431 PCDH11YQ9BZA8 1340 aa12.81□□□□□ -0.36
CCDC40-214ENST00000575431 U2SURPO15042 1029 aaKnown RBP12.8□□□□□ -0.36
CCDC40-214ENST00000575431 ANP32CO43423 234 aa12.8□□□□□ -0.36
CCDC40-214ENST00000575431 PLEKHO1Q53GL0 409 aaPredicted RBP12.8□□□□□ -0.36
CCDC40-214ENST00000575431 DDX54Q8TDD1 881 aaKnown RBP12.8□□□□□ -0.36
CCDC40-214ENST00000575431 PKD1L3Q7Z443 1732 aa12.79□□□□□ -0.36
CCDC40-214ENST00000575431 FAM182BQ5T319 152 aa12.78□□□□□ -0.36
CCDC40-214ENST00000575431 IFNL2Q8IZJ0 200 aa12.78□□□□□ -0.36
CCDC40-214ENST00000575431 FCHSD2O94868 740 aa12.77□□□□□ -0.37
CCDC40-214ENST00000575431 HSP90AB1P08238 724 aaKnown RBP12.77□□□□□ -0.37
CCDC40-214ENST00000575431 U2AF1L5P0DN76 240 aaPredicted RBP12.77□□□□□ -0.37
CCDC40-214ENST00000575431 U2AF1Q01081 240 aaKnown RBP eCLIP12.77□□□□□ -0.37
CCDC40-214ENST00000575431 AEBP1Q8IUX7 1158 aa12.77□□□□□ -0.37
CCDC40-214ENST00000575431 PNNQ9H307 717 aaKnown RBP12.77□□□□□ -0.37
CCDC40-214ENST00000575431 SHANK3Q9BYB0 1731 aa12.76□□□□□ -0.37
CCDC40-214ENST00000575431 TRIM37O94972 964 aa12.76□□□□□ -0.37
CCDC40-214ENST00000575431 HMOX1P09601 288 aa12.76□□□□□ -0.37
CCDC40-214ENST00000575431 BAG6P46379 1132 aa12.76□□□□□ -0.37
CCDC40-214ENST00000575431 NKX1-1Q15270 411 aaPredicted RBP12.76□□□□□ -0.37
CCDC40-214ENST00000575431 BCL11BQ9C0K0 894 aaPredicted RBP12.76□□□□□ -0.37
CCDC40-214ENST00000575431 SBF2Q86WG5 1849 aa12.76□□□□□ -0.37
CCDC40-214ENST00000575431 CYP27B1O15528 508 aa12.75□□□□□ -0.37
CCDC40-214ENST00000575431 NEFMP07197 916 aa12.75□□□□□ -0.37
CCDC40-214ENST00000575431 PHKG2P15735 406 aa12.74□□□□□ -0.37
CCDC40-214ENST00000575431 C1orf141Q5JVX7 400 aa12.74□□□□□ -0.37
CCDC40-214ENST00000575431 NHSQ6T4R5 1651 aa12.73□□□□□ -0.37
CCDC40-214ENST00000575431 ZNF530Q6P9A1 599 aaPredicted RBP12.73□□□□□ -0.37
CCDC40-214ENST00000575431 GAS2L2Q8NHY3 880 aa12.73□□□□□ -0.37
CCDC40-214ENST00000575431 RSPH6AQ9H0K4 717 aa12.73□□□□□ -0.37
CCDC40-214ENST00000575431 TNS1Q9HBL0 1735 aaKnown RBP12.72□□□□□ -0.37
CCDC40-214ENST00000575431 APBA3O96018 575 aa12.72□□□□□ -0.37
CCDC40-214ENST00000575431 PRKAR2BP31323 418 aa12.72□□□□□ -0.37
CCDC40-214ENST00000575431 WDR43Q15061 677 aaKnown RBP eCLIP12.72□□□□□ -0.37
CCDC40-214ENST00000575431 AKAP4Q5JQC9 854 aa12.72□□□□□ -0.37
CCDC40-214ENST00000575431 DCAF5Q96JK2 942 aa12.72□□□□□ -0.37
CCDC40-214ENST00000575431 PLSCR1O15162 318 aa12.71□□□□□ -0.37
CCDC40-214ENST00000575431 DOT1LQ8TEK3 1739 aa12.71□□□□□ -0.38
CCDC40-214ENST00000575431 ERVV-2B6SEH9 535 aa12.7□□□□□ -0.38
CCDC40-214ENST00000575431 HMGB2P26583 209 aaKnown RBP12.7□□□□□ -0.38
CCDC40-214ENST00000575431 PRIM1P49642 420 aaKnown RBP12.7□□□□□ -0.38
CCDC40-214ENST00000575431 MTHFSDQ2M296 383 aaKnown RBP12.7□□□□□ -0.38
CCDC40-214ENST00000575431 SYTL4Q96C24 671 aaPredicted RBP12.7□□□□□ -0.38
CCDC40-214ENST00000575431 ACSBG1Q96GR2 724 aa12.7□□□□□ -0.38
CCDC40-214ENST00000575431 RGPD3A6NKT7 1758 aaPredicted RBP12.7□□□□□ -0.38
CCDC40-214ENST00000575431 RGPD4Q7Z3J3 1758 aa12.7□□□□□ -0.38
CCDC40-214ENST00000575431 KCNQ2O43526 872 aa12.69□□□□□ -0.38
CCDC40-214ENST00000575431 MAPK8IP3Q9UPT6 1336 aa12.68□□□□□ -0.38
CCDC40-214ENST00000575431 GNAT3A8MTJ3 354 aa12.68□□□□□ -0.38
CCDC40-214ENST00000575431 DEFB132Q7Z7B7 95 aa12.68□□□□□ -0.38
CCDC40-214ENST00000575431 KAT6BQ8WYB5 2073 aa12.68□□□□□ -0.38
CCDC40-214ENST00000575431 BTAF1O14981 1849 aa12.67□□□□□ -0.38
CCDC40-214ENST00000575431 HTATSF1O43719 755 aaKnown RBP12.67□□□□□ -0.38
CCDC40-214ENST00000575431 EN1Q05925 392 aaPredicted RBP12.67□□□□□ -0.38
CCDC40-214ENST00000575431 SMARCC1Q92922 1105 aaPredicted RBP12.67□□□□□ -0.38
CCDC40-214ENST00000575431 PHACTR3Q96KR7 559 aa12.67□□□□□ -0.38
CCDC40-214ENST00000575431 CAMKK2Q96RR4 588 aa12.67□□□□□ -0.38
CCDC40-214ENST00000575431 PLEKHF1Q96S99 279 aa12.67□□□□□ -0.38
CCDC40-214ENST00000575431 MRS2Q9HD23 443 aa12.67□□□□□ -0.38
CCDC40-214ENST00000575431 TMOD3Q9NYL9 352 aa12.67□□□□□ -0.38
CCDC40-214ENST00000575431 CABP4P57796 275 aa12.66□□□□□ -0.38
CCDC40-214ENST00000575431 MPRIPQ6WCQ1 1025 aa12.66□□□□□ -0.38
CCDC40-214ENST00000575431 PTF1AQ7RTS3 328 aa12.66□□□□□ -0.38
CCDC40-214ENST00000575431 ITGB4P16144 1822 aa12.66□□□□□ -0.38
CCDC40-214ENST00000575431 MAP3K5Q99683 1374 aa12.66□□□□□ -0.38
CCDC40-214ENST00000575431 SCN11AQ9UI33 1791 aa12.66□□□□□ -0.38
CCDC40-214ENST00000575431 TOGARAM1Q9Y4F4 1720 aa12.65□□□□□ -0.38
CCDC40-214ENST00000575431 ADAMTS7Q9UKP4 1686 aa12.65□□□□□ -0.38
CCDC40-214ENST00000575431 SLC27A3Q5K4L6 730 aa12.65□□□□□ -0.38
CCDC40-214ENST00000575431 RTF1Q92541 710 aaKnown RBP12.65□□□□□ -0.38
CCDC40-214ENST00000575431 RUNDC1Q96C34 613 aa12.65□□□□□ -0.38
CCDC40-214ENST00000575431 ADAMTS8Q9UP79 889 aa12.65□□□□□ -0.38
CCDC40-214ENST00000575431 KDM6AO15550 1401 aaPredicted RBP12.64□□□□□ -0.39
CCDC40-214ENST00000575431 RNMTO43148 476 aaKnown RBP12.64□□□□□ -0.39
CCDC40-214ENST00000575431 EZH2Q15910 746 aaKnown RBP12.64□□□□□ -0.39
CCDC40-214ENST00000575431 DIEXFQ68CQ4 756 aaKnown RBP12.64□□□□□ -0.39
CCDC40-214ENST00000575431 PIGBQ92521 554 aa12.64□□□□□ -0.39
CCDC40-214ENST00000575431 NFE2L2Q16236 605 aa12.63□□□□□ -0.39
CCDC40-214ENST00000575431 TXNRD1Q16881 649 aa12.63□□□□□ -0.39
CCDC40-214ENST00000575431 NBPF14Q5TI25 921 aa12.63□□□□□ -0.39
CCDC40-214ENST00000575431 PNISRQ8TF01 805 aaKnown RBP12.63□□□□□ -0.39
CCDC40-214ENST00000575431 SLC52A2Q9HAB3 445 aa12.63□□□□□ -0.39
CCDC40-214ENST00000575431 RREB1Q92766 1687 aa12.62□□□□□ -0.39
CCDC40-214ENST00000575431 MRC1P22897 1456 aa12.62□□□□□ -0.39
CCDC40-214ENST00000575431 LMOD3Q0VAK6 560 aa12.62□□□□□ -0.39
CCDC40-214ENST00000575431 TEFQ10587 303 aa12.62□□□□□ -0.39
CCDC40-214ENST00000575431 NFATC2IPQ8NCF5 419 aa12.62□□□□□ -0.39
CCDC40-214ENST00000575431 LGR6Q9HBX8 967 aa12.62□□□□□ -0.39
CCDC40-214ENST00000575431 LY75O60449 1722 aa12.62□□□□□ -0.39
CCDC40-214ENST00000575431 CEMIPQ8WUJ3 1361 aa12.61□□□□□ -0.39
CCDC40-214ENST00000575431 PALLDQ8WX93 1383 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms