RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 LCE2AQ5TA79 106 aaPredicted RBP6.81□□□□□ -1.32
NUP88-209ENST00000574855 CYP2U1Q7Z449 544 aa6.81□□□□□ -1.32
NUP88-209ENST00000574855 PHTF2Q8N3S3 785 aa6.81□□□□□ -1.32
NUP88-209ENST00000574855 POM121Q96HA1 1249 aa6.81□□□□□ -1.32
NUP88-209ENST00000574855 H3BM21 787 aa6.8□□□□□ -1.32
NUP88-209ENST00000574855 VEGFBP49765 207 aa6.8□□□□□ -1.32
NUP88-209ENST00000574855 USP4Q13107 963 aa6.8□□□□□ -1.32
NUP88-209ENST00000574855 RNF135Q8IUD6 432 aa6.8□□□□□ -1.32
NUP88-209ENST00000574855 CCDC85AQ96PX6 553 aaPredicted RBP6.8□□□□□ -1.32
NUP88-209ENST00000574855 A0A1W2PRU2 124 aa6.79□□□□□ -1.32
NUP88-209ENST00000574855 IRF7Q92985 503 aa6.79□□□□□ -1.32
NUP88-209ENST00000574855 DOLKQ9UPQ8 538 aa6.79□□□□□ -1.32
NUP88-209ENST00000574855 MEN1O00255 615 aa6.78□□□□□ -1.32
NUP88-209ENST00000574855 TRAK2O60296 914 aa6.78□□□□□ -1.32
NUP88-209ENST00000574855 RNF144AP50876 292 aaPredicted RBP6.78□□□□□ -1.32
NUP88-209ENST00000574855 PTSQ03393 145 aa6.78□□□□□ -1.32
NUP88-209ENST00000574855 MAP7D1Q3KQU3 841 aa6.78□□□□□ -1.32
NUP88-209ENST00000574855 TSGA10IPQ3SY00 556 aa6.78□□□□□ -1.32
NUP88-209ENST00000574855 RNF217Q8TC41 542 aa6.78□□□□□ -1.32
NUP88-209ENST00000574855 SIRT1Q96EB6 747 aa6.78□□□□□ -1.32
NUP88-209ENST00000574855 NLRP3Q96P20 1036 aa6.78□□□□□ -1.32
NUP88-209ENST00000574855 CDCA7Q9BWT1 371 aaPredicted RBP6.78□□□□□ -1.32
NUP88-209ENST00000574855 OSBPL3Q9H4L5 887 aa6.78□□□□□ -1.32
NUP88-209ENST00000574855 PPFIA3O75145 1194 aa6.77□□□□□ -1.33
NUP88-209ENST00000574855 GNRH1P01148 92 aa6.77□□□□□ -1.33
NUP88-209ENST00000574855 CHIC2Q9UKJ5 165 aa6.77□□□□□ -1.33
NUP88-209ENST00000574855 GPC1P35052 558 aa6.76□□□□□ -1.33
NUP88-209ENST00000574855 CLN3Q13286 438 aa6.76□□□□□ -1.33
NUP88-209ENST00000574855 LYSMD3Q7Z3D4 306 aa6.76□□□□□ -1.33
NUP88-209ENST00000574855 ALG2Q9H553 416 aa6.76□□□□□ -1.33
NUP88-209ENST00000574855 OXLD1Q5BKU9 147 aa6.75□□□□□ -1.33
NUP88-209ENST00000574855 SLC27A3Q5K4L6 730 aa6.75□□□□□ -1.33
NUP88-209ENST00000574855 FOXD4L5Q5VV16 416 aaPredicted RBP6.75□□□□□ -1.33
NUP88-209ENST00000574855 PRICKLE2Q7Z3G6 844 aa6.75□□□□□ -1.33
NUP88-209ENST00000574855 CCDC155Q8N6L0 562 aa6.75□□□□□ -1.33
NUP88-209ENST00000574855 ARHGEF10LQ9HCE6 1279 aa6.75□□□□□ -1.33
NUP88-209ENST00000574855 SLC35F4A4IF30 521 aa6.74□□□□□ -1.33
NUP88-209ENST00000574855 WIPF1O43516 503 aa6.74□□□□□ -1.33
NUP88-209ENST00000574855 PLPP7Q8NBV4 271 aa6.74□□□□□ -1.33
NUP88-209ENST00000574855 ESCO1Q5FWF5 840 aa6.73□□□□□ -1.33
NUP88-209ENST00000574855 LCE2CQ5TA81 110 aa6.73□□□□□ -1.33
NUP88-209ENST00000574855 HDGFL1Q5TGJ6 251 aa6.73□□□□□ -1.33
NUP88-209ENST00000574855 NFATC2IPQ8NCF5 419 aa6.73□□□□□ -1.33
NUP88-209ENST00000574855 CNKSR1Q969H4 720 aa6.73□□□□□ -1.33
NUP88-209ENST00000574855 CLUAP1Q96AJ1 413 aa6.73□□□□□ -1.33
NUP88-209ENST00000574855 ESYT1Q9BSJ8 1104 aa6.73□□□□□ -1.33
NUP88-209ENST00000574855 ERBB4Q15303 1308 aa6.73□□□□□ -1.33
NUP88-209ENST00000574855 LZTS3O60299 673 aaPredicted RBP6.72□□□□□ -1.33
NUP88-209ENST00000574855 VSIG8P0DPA2 414 aa6.72□□□□□ -1.33
NUP88-209ENST00000574855 SKIP12755 728 aa6.72□□□□□ -1.33
NUP88-209ENST00000574855 GMPRP36959 345 aa6.72□□□□□ -1.33
NUP88-209ENST00000574855 XAGE2Q96GT9 111 aa6.72□□□□□ -1.33
NUP88-209ENST00000574855 GRIP2Q9C0E4 1043 aa6.72□□□□□ -1.33
NUP88-209ENST00000574855 RAB6BQ9NRW1 208 aa6.72□□□□□ -1.33
NUP88-209ENST00000574855 SENP3-EIF4A1A0A087X0R7 540 aa6.71□□□□□ -1.34
NUP88-209ENST00000574855 POM121CA8CG34 1229 aa6.71□□□□□ -1.34
NUP88-209ENST00000574855 PIK3CDO00329 1044 aa6.71□□□□□ -1.34
NUP88-209ENST00000574855 ITGA6P23229 1130 aa6.71□□□□□ -1.34
NUP88-209ENST00000574855 GTF2E1P29083 439 aaPredicted RBP6.71□□□□□ -1.34
NUP88-209ENST00000574855 INSM1Q01101 510 aaPredicted RBP6.71□□□□□ -1.34
NUP88-209ENST00000574855 CENPCQ03188 943 aa6.71□□□□□ -1.34
NUP88-209ENST00000574855 PROSER2Q86WR7 435 aaPredicted RBP6.71□□□□□ -1.34
NUP88-209ENST00000574855 A6NJR5 290 aa6.7□□□□□ -1.34
NUP88-209ENST00000574855 IL2RAP01589 272 aa6.7□□□□□ -1.34
NUP88-209ENST00000574855 RHOQP17081 205 aa6.7□□□□□ -1.34
NUP88-209ENST00000574855 POU4F2Q12837 409 aa6.7□□□□□ -1.34
NUP88-209ENST00000574855 EML3Q32P44 896 aa6.7□□□□□ -1.34
NUP88-209ENST00000574855 WDR44Q5JSH3 913 aa6.7□□□□□ -1.34
NUP88-209ENST00000574855 FNBP4Q8N3X1 1017 aaPredicted RBP6.7□□□□□ -1.34
NUP88-209ENST00000574855 NANOS1Q8WY41 292 aaKnown RBP6.7□□□□□ -1.34
NUP88-209ENST00000574855 SPATA31C2B4DYI2 1134 aa6.69□□□□□ -1.34
NUP88-209ENST00000574855 NBPF10Q6P3W6 841 aaKnown RBP6.69□□□□□ -1.34
NUP88-209ENST00000574855 NBPF15Q8N660 670 aa6.69□□□□□ -1.34
NUP88-209ENST00000574855 ADAMTS19Q8TE59 1207 aa6.69□□□□□ -1.34
NUP88-209ENST00000574855 ZSCAN10Q96SZ4 725 aaPredicted RBP6.69□□□□□ -1.34
NUP88-209ENST00000574855 NOD1Q9Y239 953 aa6.69□□□□□ -1.34
NUP88-209ENST00000574855 TMEM214Q6NUQ4 689 aaKnown RBP6.68□□□□□ -1.34
NUP88-209ENST00000574855 SV2AQ7L0J3 742 aa6.68□□□□□ -1.34
NUP88-209ENST00000574855 TAS1R3Q7RTX0 852 aa6.68□□□□□ -1.34
NUP88-209ENST00000574855 VWA5B2Q8N398 1253 aa6.68□□□□□ -1.34
NUP88-209ENST00000574855 ETNK1Q9HBU6 452 aa6.68□□□□□ -1.34
NUP88-209ENST00000574855 DYRK1BQ9Y463 629 aa6.68□□□□□ -1.34
NUP88-209ENST00000574855 HRH3Q9Y5N1 445 aa6.68□□□□□ -1.34
NUP88-209ENST00000574855 CDC14CA4D256 554 aa6.67□□□□□ -1.34
NUP88-209ENST00000574855 WASLO00401 505 aaPredicted RBP6.67□□□□□ -1.34
NUP88-209ENST00000574855 INHAP05111 366 aa6.67□□□□□ -1.34
NUP88-209ENST00000574855 NCOA4Q13772 614 aa6.67□□□□□ -1.34
NUP88-209ENST00000574855 GNASQ5JWF2 1037 aa6.67□□□□□ -1.34
NUP88-209ENST00000574855 TIMMDC1Q9NPL8 285 aa6.67□□□□□ -1.34
NUP88-209ENST00000574855 STK17AQ9UEE5 414 aa6.67□□□□□ -1.34
NUP88-209ENST00000574855 USP17L5A8MUK1 530 aa6.66□□□□□ -1.34
NUP88-209ENST00000574855 STAU1O95793 577 aaKnown RBP6.66□□□□□ -1.34
NUP88-209ENST00000574855 SCNN1DP51172 638 aa6.66□□□□□ -1.34
NUP88-209ENST00000574855 GDF10P55107 478 aa6.66□□□□□ -1.34
NUP88-209ENST00000574855 RIPOR1Q6ZS17 1223 aa6.66□□□□□ -1.34
NUP88-209ENST00000574855 GPR161Q8N6U8 529 aaKnown RBP6.66□□□□□ -1.34
NUP88-209ENST00000574855 GLMNQ92990 594 aa6.66□□□□□ -1.34
NUP88-209ENST00000574855 GMCL1Q96IK5 515 aa6.66□□□□□ -1.34
NUP88-209ENST00000574855 GAS2L1Q99501 681 aaPredicted RBP6.66□□□□□ -1.34
NUP88-209ENST00000574855 FHDC1Q9C0D6 1143 aaPredicted RBP6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms