RNA–Protein interactions for RNA: ENST00000574662.1

SMPD3-212, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 3

Gene SMPD3, Length 1,755 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-212ENST00000574662 NRAPQ86VF7 1730 aa20.85■□□□□ 0.93
SMPD3-212ENST00000574662 MTHFSDQ2M296 383 aaKnown RBP20.85■□□□□ 0.93
SMPD3-212ENST00000574662 USP21Q9UK80 565 aa20.85■□□□□ 0.93
SMPD3-212ENST00000574662 NWD2Q9ULI1 1742 aa20.84■□□□□ 0.93
SMPD3-212ENST00000574662 AFF2P51816 1311 aa20.84■□□□□ 0.93
SMPD3-212ENST00000574662 NEFMP07197 916 aa20.84■□□□□ 0.93
SMPD3-212ENST00000574662 NFE2L2Q16236 605 aa20.84■□□□□ 0.93
SMPD3-212ENST00000574662 RAPGEF4Q8WZA2 1011 aa20.83■□□□□ 0.93
SMPD3-212ENST00000574662 RIPK4P57078 832 aa20.82■□□□□ 0.92
SMPD3-212ENST00000574662 B4GALNT3Q6L9W6 998 aa20.82■□□□□ 0.92
SMPD3-212ENST00000574662 MEGF6O75095 1541 aa20.82■□□□□ 0.92
SMPD3-212ENST00000574662 SPATA31A1Q5TZJ5 1347 aa20.82■□□□□ 0.92
SMPD3-212ENST00000574662 TATP17735 454 aaPredicted RBP20.82■□□□□ 0.92
SMPD3-212ENST00000574662 SPATA31A5Q5VU36 1347 aa20.81■□□□□ 0.92
SMPD3-212ENST00000574662 SPATA31A7Q8IWB4 1347 aa20.81■□□□□ 0.92
SMPD3-212ENST00000574662 VPS72Q15906 364 aa20.81■□□□□ 0.92
SMPD3-212ENST00000574662 TRIM35Q9UPQ4 493 aa20.81■□□□□ 0.92
SMPD3-212ENST00000574662 CCDC9Q9Y3X0 531 aaKnown RBP20.8■□□□□ 0.92
SMPD3-212ENST00000574662 IL2RBP14784 551 aa20.8■□□□□ 0.92
SMPD3-212ENST00000574662 PLEKHO1Q53GL0 409 aaPredicted RBP20.8■□□□□ 0.92
SMPD3-212ENST00000574662 WWC1Q8IX03 1113 aa20.78■□□□□ 0.92
SMPD3-212ENST00000574662 RGS17Q9UGC6 210 aaPredicted RBP20.78■□□□□ 0.92
SMPD3-212ENST00000574662 ZNF521Q96K83 1311 aa20.78■□□□□ 0.92
SMPD3-212ENST00000574662 AMOTQ4VCS5 1084 aa20.77■□□□□ 0.92
SMPD3-212ENST00000574662 NCBP3Q53F19 620 aaKnown RBP20.77■□□□□ 0.92
SMPD3-212ENST00000574662 NGEFQ8N5V2 710 aa20.77■□□□□ 0.92
SMPD3-212ENST00000574662 GAS2L2Q8NHY3 880 aa20.77■□□□□ 0.92
SMPD3-212ENST00000574662 MSH5O43196 834 aa20.77■□□□□ 0.91
SMPD3-212ENST00000574662 CCDC27Q2M243 656 aa20.77■□□□□ 0.91
SMPD3-212ENST00000574662 OVOS2A0A0G2JMS6 1433 aa20.76■□□□□ 0.91
SMPD3-212ENST00000574662 THRAP3Q9Y2W1 955 aaKnown RBP20.76■□□□□ 0.91
SMPD3-212ENST00000574662 DISP2A7MBM2 1401 aa20.75■□□□□ 0.91
SMPD3-212ENST00000574662 DCTN1Q14203 1278 aa20.75■□□□□ 0.91
SMPD3-212ENST00000574662 ZNF530Q6P9A1 599 aaPredicted RBP20.75■□□□□ 0.91
SMPD3-212ENST00000574662 ERICH6Q7L0X2 663 aa20.75■□□□□ 0.91
SMPD3-212ENST00000574662 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.75■□□□□ 0.91
SMPD3-212ENST00000574662 ZCRB1Q8TBF4 217 aaKnown RBP20.74■□□□□ 0.91
SMPD3-212ENST00000574662 THUMPD2Q9BTF0 503 aaKnown RBP20.74■□□□□ 0.91
SMPD3-212ENST00000574662 QTRT2Q9H974 415 aaKnown RBP20.74■□□□□ 0.91
SMPD3-212ENST00000574662 SPG7Q9UQ90 795 aa20.74■□□□□ 0.91
SMPD3-212ENST00000574662 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.73■□□□□ 0.91
SMPD3-212ENST00000574662 SOCS7O14512 581 aa20.73■□□□□ 0.91
SMPD3-212ENST00000574662 PDE3BQ13370 1112 aa20.73■□□□□ 0.91
SMPD3-212ENST00000574662 BARGINQ6ZT62 677 aa20.73■□□□□ 0.91
SMPD3-212ENST00000574662 CDCA7LQ96GN5 454 aa20.73■□□□□ 0.91
SMPD3-212ENST00000574662 ATRNO75882 1429 aa20.73■□□□□ 0.91
SMPD3-212ENST00000574662 GNAT3A8MTJ3 354 aa20.72■□□□□ 0.91
SMPD3-212ENST00000574662 CYP27B1O15528 508 aa20.72■□□□□ 0.91
SMPD3-212ENST00000574662 MCM10Q7L590 875 aa20.72■□□□□ 0.91
SMPD3-212ENST00000574662 GJD4Q96KN9 370 aaPredicted RBP20.72■□□□□ 0.91
SMPD3-212ENST00000574662 SPINK5Q9NQ38 1064 aaPredicted RBP20.72■□□□□ 0.91
SMPD3-212ENST00000574662 TRPC5Q9UL62 973 aaPredicted RBP20.72■□□□□ 0.91
SMPD3-212ENST00000574662 DLG5Q8TDM6 1919 aa20.72■□□□□ 0.91
SMPD3-212ENST00000574662 FAM98CQ17RN3 349 aaKnown RBP20.72■□□□□ 0.91
SMPD3-212ENST00000574662 AKAP4Q5JQC9 854 aa20.72■□□□□ 0.91
SMPD3-212ENST00000574662 CCDC136Q96JN2 1154 aa20.72■□□□□ 0.91
SMPD3-212ENST00000574662 ZNF772Q68DY9 489 aaPredicted RBP20.71■□□□□ 0.91
SMPD3-212ENST00000574662 IL17REQ8NFR9 667 aa20.71■□□□□ 0.91
SMPD3-212ENST00000574662 PLEKHG2Q9H7P9 1386 aa20.71■□□□□ 0.91
SMPD3-212ENST00000574662 PHKG2P15735 406 aa20.7■□□□□ 0.9
SMPD3-212ENST00000574662 POTEAQ6S8J7 498 aa20.7■□□□□ 0.9
SMPD3-212ENST00000574662 LGR6Q9HBX8 967 aa20.7■□□□□ 0.9
SMPD3-212ENST00000574662 MAP3K5Q99683 1374 aa20.7■□□□□ 0.9
SMPD3-212ENST00000574662 C1orf141Q5JVX7 400 aa20.69■□□□□ 0.9
SMPD3-212ENST00000574662 WDR63Q8IWG1 891 aa20.69■□□□□ 0.9
SMPD3-212ENST00000574662 DDX54Q8TDD1 881 aaKnown RBP20.69■□□□□ 0.9
SMPD3-212ENST00000574662 PARP4Q9UKK3 1724 aaKnown RBP20.69■□□□□ 0.9
SMPD3-212ENST00000574662 HTATSF1O43719 755 aaKnown RBP20.69■□□□□ 0.9
SMPD3-212ENST00000574662 GOLGA2Q08379 1002 aa20.69■□□□□ 0.9
SMPD3-212ENST00000574662 LMOD3Q0VAK6 560 aa20.69■□□□□ 0.9
SMPD3-212ENST00000574662 MPRIPQ6WCQ1 1025 aa20.69■□□□□ 0.9
SMPD3-212ENST00000574662 CDCA7Q9BWT1 371 aaPredicted RBP20.69■□□□□ 0.9
SMPD3-212ENST00000574662 PKD1L3Q7Z443 1732 aa20.68■□□□□ 0.9
SMPD3-212ENST00000574662 EXOC5O00471 708 aa20.68■□□□□ 0.9
SMPD3-212ENST00000574662 IFNL2Q8IZJ0 200 aa20.68■□□□□ 0.9
SMPD3-212ENST00000574662 RTF1Q92541 710 aaKnown RBP20.68■□□□□ 0.9
SMPD3-212ENST00000574662 GLI3P10071 1580 aa20.68■□□□□ 0.9
SMPD3-212ENST00000574662 SLFN5Q08AF3 891 aa20.66■□□□□ 0.9
SMPD3-212ENST00000574662 PCDH11XQ9BZA7 1347 aa20.65■□□□□ 0.9
SMPD3-212ENST00000574662 PCDH11YQ9BZA8 1340 aa20.65■□□□□ 0.9
SMPD3-212ENST00000574662 RNMTO43148 476 aaKnown RBP20.65■□□□□ 0.9
SMPD3-212ENST00000574662 ONECUT3O60422 494 aaPredicted RBP20.65■□□□□ 0.9
SMPD3-212ENST00000574662 WNK3Q9BYP7 1800 aa20.65■□□□□ 0.9
SMPD3-212ENST00000574662 RRP1P56182 461 aaKnown RBP20.64■□□□□ 0.9
SMPD3-212ENST00000574662 DDB1Q16531 1140 aa20.64■□□□□ 0.9
SMPD3-212ENST00000574662 SHANK3Q9BYB0 1731 aa20.64■□□□□ 0.9
SMPD3-212ENST00000574662 TRMT2AQ8IZ69 625 aaKnown RBP20.64■□□□□ 0.89
SMPD3-212ENST00000574662 NKX1-1Q15270 411 aaPredicted RBP20.63■□□□□ 0.89
SMPD3-212ENST00000574662 CEMIPQ8WUJ3 1361 aa20.63■□□□□ 0.89
SMPD3-212ENST00000574662 IL16Q14005 1332 aa20.63■□□□□ 0.89
SMPD3-212ENST00000574662 KDM6AO15550 1401 aaPredicted RBP20.62■□□□□ 0.89
SMPD3-212ENST00000574662 LAS1LQ9Y4W2 734 aaKnown RBP20.62■□□□□ 0.89
SMPD3-212ENST00000574662 E9PSI1 815 aa20.62■□□□□ 0.89
SMPD3-212ENST00000574662 ZNF853P0CG23 659 aa20.62■□□□□ 0.89
SMPD3-212ENST00000574662 DUSP27Q5VZP5 1158 aa20.62■□□□□ 0.89
SMPD3-212ENST00000574662 MARCH10Q8NA82 808 aaPredicted RBP20.62■□□□□ 0.89
SMPD3-212ENST00000574662 DCAF5Q96JK2 942 aa20.62■□□□□ 0.89
SMPD3-212ENST00000574662 TNS2Q63HR2 1409 aa20.61■□□□□ 0.89
SMPD3-212ENST00000574662 A0A0G2JS52 829 aa20.6■□□□□ 0.89
SMPD3-212ENST00000574662 HSP90AB1P08238 724 aaKnown RBP20.6■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms