RNA–Protein interactions for RNA: ENST00000574428.5

ATPAF1-213, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 1 (best) BASIC

Gene ATPAF1, Length 1,760 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-213ENST00000574428 PLEKHO1Q53GL0 409 aaPredicted RBP31.53■■■□□ 2.64
ATPAF1-213ENST00000574428 FNBP4Q8N3X1 1017 aaPredicted RBP31.53■■■□□ 2.64
ATPAF1-213ENST00000574428 UNC5CLQ8IV45 518 aa31.52■■■□□ 2.64
ATPAF1-213ENST00000574428 PARP4Q9UKK3 1724 aaKnown RBP31.51■■■□□ 2.63
ATPAF1-213ENST00000574428 GOLGA2Q08379 1002 aa31.51■■■□□ 2.63
ATPAF1-213ENST00000574428 PDE3BQ13370 1112 aa31.51■■■□□ 2.63
ATPAF1-213ENST00000574428 AMOTQ4VCS5 1084 aa31.51■■■□□ 2.63
ATPAF1-213ENST00000574428 OVOS2A0A0G2JMS6 1433 aa31.5■■■□□ 2.63
ATPAF1-213ENST00000574428 LMOD3Q0VAK6 560 aa31.49■■■□□ 2.63
ATPAF1-213ENST00000574428 THUMPD2Q9BTF0 503 aaKnown RBP31.49■■■□□ 2.63
ATPAF1-213ENST00000574428 IL2RBP14784 551 aa31.48■■■□□ 2.63
ATPAF1-213ENST00000574428 ZNF530Q6P9A1 599 aaPredicted RBP31.48■■■□□ 2.63
ATPAF1-213ENST00000574428 DCTN1Q14203 1278 aa31.48■■■□□ 2.63
ATPAF1-213ENST00000574428 PKD1L3Q7Z443 1732 aa31.47■■■□□ 2.63
ATPAF1-213ENST00000574428 MAP3K5Q99683 1374 aa31.47■■■□□ 2.63
ATPAF1-213ENST00000574428 SPATA31A1Q5TZJ5 1347 aa31.47■■■□□ 2.63
ATPAF1-213ENST00000574428 WDR63Q8IWG1 891 aa31.47■■■□□ 2.63
ATPAF1-213ENST00000574428 SPINK5Q9NQ38 1064 aaPredicted RBP31.47■■■□□ 2.63
ATPAF1-213ENST00000574428 USP21Q9UK80 565 aa31.47■■■□□ 2.63
ATPAF1-213ENST00000574428 CCDC9Q9Y3X0 531 aaKnown RBP31.46■■■□□ 2.63
ATPAF1-213ENST00000574428 PLEKHG2Q9H7P9 1386 aa31.46■■■□□ 2.63
ATPAF1-213ENST00000574428 SPATA31A5Q5VU36 1347 aa31.46■■■□□ 2.63
ATPAF1-213ENST00000574428 SPATA31A7Q8IWB4 1347 aa31.46■■■□□ 2.63
ATPAF1-213ENST00000574428 MCM10Q7L590 875 aa31.45■■■□□ 2.63
ATPAF1-213ENST00000574428 TNKS1BP1Q9C0C2 1729 aaKnown RBP31.45■■■□□ 2.63
ATPAF1-213ENST00000574428 AFF2P51816 1311 aa31.45■■■□□ 2.63
ATPAF1-213ENST00000574428 GNAT3A8MTJ3 354 aa31.45■■■□□ 2.62
ATPAF1-213ENST00000574428 SPG7Q9UQ90 795 aa31.45■■■□□ 2.62
ATPAF1-213ENST00000574428 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP31.44■■■□□ 2.62
ATPAF1-213ENST00000574428 WNK3Q9BYP7 1800 aa31.43■■■□□ 2.62
ATPAF1-213ENST00000574428 DISP2A7MBM2 1401 aa31.43■■■□□ 2.62
ATPAF1-213ENST00000574428 SLFN5Q08AF3 891 aa31.43■■■□□ 2.62
ATPAF1-213ENST00000574428 RTF1Q92541 710 aaKnown RBP31.43■■■□□ 2.62
ATPAF1-213ENST00000574428 VPS72Q15906 364 aa31.42■■■□□ 2.62
ATPAF1-213ENST00000574428 AKAP4Q5JQC9 854 aa31.41■■■□□ 2.62
ATPAF1-213ENST00000574428 C1orf141Q5JVX7 400 aa31.41■■■□□ 2.62
ATPAF1-213ENST00000574428 E9PSI1 815 aa31.4■■■□□ 2.62
ATPAF1-213ENST00000574428 HTATSF1O43719 755 aaKnown RBP31.39■■■□□ 2.62
ATPAF1-213ENST00000574428 ZCRB1Q8TBF4 217 aaKnown RBP31.39■■■□□ 2.62
ATPAF1-213ENST00000574428 THRAP3Q9Y2W1 955 aaKnown RBP31.39■■■□□ 2.62
ATPAF1-213ENST00000574428 IL16Q14005 1332 aa31.37■■■□□ 2.61
ATPAF1-213ENST00000574428 SHANK3Q9BYB0 1731 aa31.37■■■□□ 2.61
ATPAF1-213ENST00000574428 CALD1Q05682 793 aaKnown RBP31.37■■■□□ 2.61
ATPAF1-213ENST00000574428 DUSP27Q5VZP5 1158 aa31.37■■■□□ 2.61
ATPAF1-213ENST00000574428 GTF3C3Q9Y5Q9 886 aa31.37■■■□□ 2.61
ATPAF1-213ENST00000574428 CYP27B1O15528 508 aa31.36■■■□□ 2.61
ATPAF1-213ENST00000574428 PHKG2P15735 406 aa31.36■■■□□ 2.61
ATPAF1-213ENST00000574428 TRMT2AQ8IZ69 625 aaKnown RBP31.36■■■□□ 2.61
ATPAF1-213ENST00000574428 IL17REQ8NFR9 667 aa31.36■■■□□ 2.61
ATPAF1-213ENST00000574428 LRRC37A3O60309 1634 aa31.36■■■□□ 2.61
ATPAF1-213ENST00000574428 MPRIPQ6WCQ1 1025 aa31.35■■■□□ 2.61
ATPAF1-213ENST00000574428 LAS1LQ9Y4W2 734 aaKnown RBP31.35■■■□□ 2.61
ATPAF1-213ENST00000574428 PCDH11XQ9BZA7 1347 aa31.35■■■□□ 2.61
ATPAF1-213ENST00000574428 PCDH11YQ9BZA8 1340 aa31.35■■■□□ 2.61
ATPAF1-213ENST00000574428 IFNL2Q8IZJ0 200 aa31.34■■■□□ 2.61
ATPAF1-213ENST00000574428 LGR6Q9HBX8 967 aa31.33■■■□□ 2.61
ATPAF1-213ENST00000574428 BARGINQ6ZT62 677 aa31.33■■■□□ 2.61
ATPAF1-213ENST00000574428 TSR2Q969E8 191 aaKnown RBP31.33■■■□□ 2.61
ATPAF1-213ENST00000574428 MYH16Q9H6N6 1097 aa31.33■■■□□ 2.61
ATPAF1-213ENST00000574428 ATRNO75882 1429 aa31.31■■■□□ 2.6
ATPAF1-213ENST00000574428 DDX54Q8TDD1 881 aaKnown RBP31.31■■■□□ 2.6
ATPAF1-213ENST00000574428 CDCA7Q9BWT1 371 aaPredicted RBP31.31■■■□□ 2.6
ATPAF1-213ENST00000574428 CEMIPQ8WUJ3 1361 aa31.31■■■□□ 2.6
ATPAF1-213ENST00000574428 FANCIQ9NVI1 1328 aa31.3■■■□□ 2.6
ATPAF1-213ENST00000574428 FAM98CQ17RN3 349 aaKnown RBP31.3■■■□□ 2.6
ATPAF1-213ENST00000574428 IFT57Q9NWB7 429 aa31.3■■■□□ 2.6
ATPAF1-213ENST00000574428 VIRMAQ69YN4 1812 aaKnown RBP31.3■■■□□ 2.6
ATPAF1-213ENST00000574428 KDM6AO15550 1401 aaPredicted RBP31.29■■■□□ 2.6
ATPAF1-213ENST00000574428 ADAMTS7Q9UKP4 1686 aa31.29■■■□□ 2.6
ATPAF1-213ENST00000574428 RNMTO43148 476 aaKnown RBP31.29■■■□□ 2.6
ATPAF1-213ENST00000574428 TNS2Q63HR2 1409 aa31.29■■■□□ 2.6
ATPAF1-213ENST00000574428 GLI3P10071 1580 aa31.28■■■□□ 2.6
ATPAF1-213ENST00000574428 ZNF853P0CG23 659 aa31.28■■■□□ 2.6
ATPAF1-213ENST00000574428 GNAI1P63096 354 aa31.28■■■□□ 2.6
ATPAF1-213ENST00000574428 CFAP44Q96MT7 982 aa31.28■■■□□ 2.6
ATPAF1-213ENST00000574428 TRPC5Q9UL62 973 aaPredicted RBP31.28■■■□□ 2.6
ATPAF1-213ENST00000574428 EXOC5O00471 708 aa31.26■■■□□ 2.59
ATPAF1-213ENST00000574428 GJD4Q96KN9 370 aaPredicted RBP31.26■■■□□ 2.59
ATPAF1-213ENST00000574428 SCN11AQ9UI33 1791 aa31.26■■■□□ 2.59
ATPAF1-213ENST00000574428 MBIPQ9NS73 344 aa31.25■■■□□ 2.59
ATPAF1-213ENST00000574428 HSP90AB1P08238 724 aaKnown RBP31.25■■■□□ 2.59
ATPAF1-213ENST00000574428 DCAF5Q96JK2 942 aa31.25■■■□□ 2.59
ATPAF1-213ENST00000574428 DDB1Q16531 1140 aa31.24■■■□□ 2.59
ATPAF1-213ENST00000574428 QTRT2Q9H974 415 aaKnown RBP31.24■■■□□ 2.59
ATPAF1-213ENST00000574428 MIS18AQ9NYP9 233 aa31.23■■■□□ 2.59
ATPAF1-213ENST00000574428 TEFQ10587 303 aa31.22■■■□□ 2.59
ATPAF1-213ENST00000574428 CHL1O00533 1208 aa31.22■■■□□ 2.59
ATPAF1-213ENST00000574428 THSD7AQ9UPZ6 1657 aa31.2■■■□□ 2.59
ATPAF1-213ENST00000574428 A0A0G2JS52 829 aa31.2■■■□□ 2.59
ATPAF1-213ENST00000574428 MYT1Q01538 1121 aa31.2■■■□□ 2.59
ATPAF1-213ENST00000574428 NKX1-1Q15270 411 aaPredicted RBP31.2■■■□□ 2.59
ATPAF1-213ENST00000574428 TAF7Q15545 349 aaPredicted RBP31.2■■■□□ 2.59
ATPAF1-213ENST00000574428 EXOSC9Q06265 439 aaKnown RBP31.19■■■□□ 2.58
ATPAF1-213ENST00000574428 TSPYL4Q9UJ04 414 aa31.19■■■□□ 2.58
ATPAF1-213ENST00000574428 SIPA1L3O60292 1781 aaPredicted RBP31.19■■■□□ 2.58
ATPAF1-213ENST00000574428 MRC1P22897 1456 aa31.17■■■□□ 2.58
ATPAF1-213ENST00000574428 ZNF772Q68DY9 489 aaPredicted RBP31.17■■■□□ 2.58
ATPAF1-213ENST00000574428 SLC52A2Q9HAB3 445 aa31.16■■■□□ 2.58
ATPAF1-213ENST00000574428 TOGARAM1Q9Y4F4 1720 aa31.16■■■□□ 2.58
ATPAF1-213ENST00000574428 NFATC2IPQ8NCF5 419 aa31.14■■■□□ 2.58
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms