RNA–Protein interactions for RNA: ENST00000574408.5

USP43-205, Transcript of ubiquitin specific peptidase 43, humanhuman

TSL 1 (best)

Gene USP43, Length 3,425 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP43-205ENST00000574408 C8orf34Q49A92 452 aa13.29□□□□□ -0.28
USP43-205ENST00000574408 GAS2L2Q8NHY3 880 aa13.29□□□□□ -0.28
USP43-205ENST00000574408 PDZRN3Q9UPQ7 1066 aa13.29□□□□□ -0.28
USP43-205ENST00000574408 NOP58Q9Y2X3 529 aaKnown RBP13.29□□□□□ -0.28
USP43-205ENST00000574408 LMOD2Q6P5Q4 547 aa13.28□□□□□ -0.28
USP43-205ENST00000574408 ARHGAP45Q92619 1136 aa13.28□□□□□ -0.28
USP43-205ENST00000574408 ARXQ96QS3 562 aa13.28□□□□□ -0.28
USP43-205ENST00000574408 ZBTB40Q9NUA8 1239 aa13.28□□□□□ -0.28
USP43-205ENST00000574408 USP54Q70EL1 1684 aa13.28□□□□□ -0.28
USP43-205ENST00000574408 MIS18AQ9NYP9 233 aa13.27□□□□□ -0.28
USP43-205ENST00000574408 NWD1Q149M9 1564 aa13.27□□□□□ -0.28
USP43-205ENST00000574408 USHBP1Q8N6Y0 703 aa13.27□□□□□ -0.28
USP43-205ENST00000574408 CRB1P82279 1406 aa13.27□□□□□ -0.29
USP43-205ENST00000574408 RTL1A6NKG5 1358 aa13.27□□□□□ -0.29
USP43-205ENST00000574408 IP6K1Q92551 441 aa13.26□□□□□ -0.29
USP43-205ENST00000574408 KCNH5Q8NCM2 988 aa13.26□□□□□ -0.29
USP43-205ENST00000574408 DAXXQ9UER7 740 aaPredicted RBP13.26□□□□□ -0.29
USP43-205ENST00000574408 TSPYL4Q9UJ04 414 aa13.26□□□□□ -0.29
USP43-205ENST00000574408 HAP1P54257 671 aaPredicted RBP13.25□□□□□ -0.29
USP43-205ENST00000574408 HDAC1Q13547 482 aaPredicted RBP13.25□□□□□ -0.29
USP43-205ENST00000574408 C19orf44Q9H6X5 657 aa13.25□□□□□ -0.29
USP43-205ENST00000574408 API5Q9BZZ5 524 aaKnown RBP13.25□□□□□ -0.29
USP43-205ENST00000574408 NFAT5O94916 1531 aa13.24□□□□□ -0.29
USP43-205ENST00000574408 KIAA0232Q92628 1395 aa13.24□□□□□ -0.29
USP43-205ENST00000574408 ABCC4O15439 1325 aa13.24□□□□□ -0.29
USP43-205ENST00000574408 LTN1O94822 1766 aa13.24□□□□□ -0.29
USP43-205ENST00000574408 GNAT3A8MTJ3 354 aa13.23□□□□□ -0.29
USP43-205ENST00000574408 HSPA2P54652 639 aa13.23□□□□□ -0.29
USP43-205ENST00000574408 KRT28Q7Z3Y7 464 aa13.23□□□□□ -0.29
USP43-205ENST00000574408 ZBTB7BO15156 539 aaPredicted RBP13.23□□□□□ -0.29
USP43-205ENST00000574408 GCP02774 474 aa13.23□□□□□ -0.29
USP43-205ENST00000574408 CHMP4BQ9H444 224 aaKnown RBP13.23□□□□□ -0.29
USP43-205ENST00000574408 C1orf115Q9H7X2 142 aa13.23□□□□□ -0.29
USP43-205ENST00000574408 C1orf167Q5SNV9 1468 aa13.23□□□□□ -0.29
USP43-205ENST00000574408 HTATSF1O43719 755 aaKnown RBP13.22□□□□□ -0.29
USP43-205ENST00000574408 NBPF6Q5VWK0 638 aa13.22□□□□□ -0.29
USP43-205ENST00000574408 NBPF4Q96M43 638 aa13.22□□□□□ -0.29
USP43-205ENST00000574408 TMEM94Q12767 1356 aa13.22□□□□□ -0.29
USP43-205ENST00000574408 ATF3P18847 181 aa13.22□□□□□ -0.29
USP43-205ENST00000574408 MAP3K5Q99683 1374 aa13.21□□□□□ -0.29
USP43-205ENST00000574408 SMC5Q8IY18 1101 aa13.21□□□□□ -0.29
USP43-205ENST00000574408 LRRC59Q96AG4 307 aaKnown RBP13.21□□□□□ -0.3
USP43-205ENST00000574408 IL27Q8NEV9 243 aa13.2□□□□□ -0.3
USP43-205ENST00000574408 ARHGEF25Q86VW2 580 aa13.2□□□□□ -0.3
USP43-205ENST00000574408 IL17REQ8NFR9 667 aa13.2□□□□□ -0.3
USP43-205ENST00000574408 MSH6P52701 1360 aa13.2□□□□□ -0.3
USP43-205ENST00000574408 SLC4A2P04920 1241 aa13.19□□□□□ -0.3
USP43-205ENST00000574408 USP19O94966 1318 aa13.18□□□□□ -0.3
USP43-205ENST00000574408 DDX17Q92841 729 aaKnown RBP13.18□□□□□ -0.3
USP43-205ENST00000574408 DDRGK1Q96HY6 314 aa13.18□□□□□ -0.3
USP43-205ENST00000574408 SLIT3O75094 1523 aa13.17□□□□□ -0.3
USP43-205ENST00000574408 MST1RQ04912 1400 aa13.17□□□□□ -0.3
USP43-205ENST00000574408 PTPRCP08575 1304 aa13.17□□□□□ -0.3
USP43-205ENST00000574408 TAF7Q15545 349 aaPredicted RBP13.17□□□□□ -0.3
USP43-205ENST00000574408 INTS3Q68E01 1043 aaKnown RBP13.17□□□□□ -0.3
USP43-205ENST00000574408 ANKRD24Q8TF21 1146 aa13.17□□□□□ -0.3
USP43-205ENST00000574408 RGS12O14924 1447 aa13.17□□□□□ -0.3
USP43-205ENST00000574408 KIF1AQ12756 1690 aa13.17□□□□□ -0.3
USP43-205ENST00000574408 LNPKQ9C0E8 428 aa13.16□□□□□ -0.3
USP43-205ENST00000574408 SEC24BO95487 1268 aa13.16□□□□□ -0.3
USP43-205ENST00000574408 ZC3H6P61129 1189 aaKnown RBP13.16□□□□□ -0.3
USP43-205ENST00000574408 G2E3Q7L622 706 aa13.16□□□□□ -0.3
USP43-205ENST00000574408 LRRC37A3O60309 1634 aa13.16□□□□□ -0.3
USP43-205ENST00000574408 TRPM3Q9HCF6 1732 aaPredicted RBP13.16□□□□□ -0.3
USP43-205ENST00000574408 SLC4A3P48751 1232 aa13.16□□□□□ -0.3
USP43-205ENST00000574408 STK31Q9BXU1 1019 aa13.16□□□□□ -0.3
USP43-205ENST00000574408 NUCB1Q02818 461 aa13.15□□□□□ -0.3
USP43-205ENST00000574408 NECTIN2Q92692 538 aa13.15□□□□□ -0.3
USP43-205ENST00000574408 STRCP1A6NGW2 1772 aa13.15□□□□□ -0.3
USP43-205ENST00000574408 ZNF530Q6P9A1 599 aaPredicted RBP13.15□□□□□ -0.3
USP43-205ENST00000574408 SIRT2Q8IXJ6 389 aa13.15□□□□□ -0.3
USP43-205ENST00000574408 AXIN2Q9Y2T1 843 aa13.15□□□□□ -0.3
USP43-205ENST00000574408 CADPS2Q86UW7 1296 aa13.14□□□□□ -0.31
USP43-205ENST00000574408 PHRF1Q9P1Y6 1649 aaKnown RBP13.14□□□□□ -0.31
USP43-205ENST00000574408 CHD1LQ86WJ1 897 aa13.14□□□□□ -0.31
USP43-205ENST00000574408 RGPD2P0DJD1 1756 aa13.14□□□□□ -0.31
USP43-205ENST00000574408 VIRMAQ69YN4 1812 aaKnown RBP13.14□□□□□ -0.31
USP43-205ENST00000574408 F6X3S4 739 aa13.14□□□□□ -0.31
USP43-205ENST00000574408 PLEKHO1Q53GL0 409 aaPredicted RBP13.14□□□□□ -0.31
USP43-205ENST00000574408 ANKRD45Q5TZF3 282 aa13.14□□□□□ -0.31
USP43-205ENST00000574408 SLC4A10Q6U841 1118 aa13.14□□□□□ -0.31
USP43-205ENST00000574408 GCC1Q96CN9 775 aa13.14□□□□□ -0.31
USP43-205ENST00000574408 LGR6Q9HBX8 967 aa13.14□□□□□ -0.31
USP43-205ENST00000574408 DCCP43146 1447 aa13.14□□□□□ -0.31
USP43-205ENST00000574408 CCDC30Q5VVM6 783 aa13.13□□□□□ -0.31
USP43-205ENST00000574408 BABAM1Q9NWV8 329 aa13.13□□□□□ -0.31
USP43-205ENST00000574408 CEMIPQ8WUJ3 1361 aa13.12□□□□□ -0.31
USP43-205ENST00000574408 NCOA3Q9Y6Q9 1424 aa13.12□□□□□ -0.31
USP43-205ENST00000574408 MPRIPQ6WCQ1 1025 aa13.12□□□□□ -0.31
USP43-205ENST00000574408 MEIS3Q99687 375 aa13.12□□□□□ -0.31
USP43-205ENST00000574408 NPHP3Q7Z494 1330 aa13.12□□□□□ -0.31
USP43-205ENST00000574408 AMOTQ4VCS5 1084 aa13.11□□□□□ -0.31
USP43-205ENST00000574408 AKAP4Q5JQC9 854 aa13.11□□□□□ -0.31
USP43-205ENST00000574408 TEFQ10587 303 aa13.11□□□□□ -0.31
USP43-205ENST00000574408 C1orf141Q5JVX7 400 aa13.11□□□□□ -0.31
USP43-205ENST00000574408 UPF2Q9HAU5 1272 aaKnown RBP13.11□□□□□ -0.31
USP43-205ENST00000574408 FLIIQ13045 1269 aa13.11□□□□□ -0.31
USP43-205ENST00000574408 FKBP5Q13451 457 aaPredicted RBP13.11□□□□□ -0.31
USP43-205ENST00000574408 CABLES1Q8TDN4 633 aa13.11□□□□□ -0.31
USP43-205ENST00000574408 ERBB3P21860 1342 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms