RNA–Protein interactions for RNA: ENST00000573166.5

SMG6-213, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 1 (best)

Gene SMG6, Length 4,236 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-213ENST00000573166 ATP7BP35670 1465 aa12.55□□□□□ -0.4
SMG6-213ENST00000573166 FER1L4A9Z1Z3 1794 aa12.55□□□□□ -0.4
SMG6-213ENST00000573166 NEXMIFQ5QGS0 1516 aa12.55□□□□□ -0.4
SMG6-213ENST00000573166 FGD1P98174 961 aa12.55□□□□□ -0.4
SMG6-213ENST00000573166 SSH1Q8WYL5 1049 aa12.55□□□□□ -0.4
SMG6-213ENST00000573166 RSPH6AQ9H0K4 717 aa12.55□□□□□ -0.4
SMG6-213ENST00000573166 MBIPQ9NS73 344 aa12.55□□□□□ -0.4
SMG6-213ENST00000573166 PDE3AQ14432 1141 aa12.54□□□□□ -0.4
SMG6-213ENST00000573166 CENPQQ7L2Z9 268 aaPredicted RBP12.54□□□□□ -0.4
SMG6-213ENST00000573166 KIAA0232Q92628 1395 aa12.54□□□□□ -0.4
SMG6-213ENST00000573166 FAM98CQ17RN3 349 aaKnown RBP12.54□□□□□ -0.4
SMG6-213ENST00000573166 KIAA1211Q6ZU35 1233 aa12.54□□□□□ -0.4
SMG6-213ENST00000573166 NFATC2IPQ8NCF5 419 aa12.54□□□□□ -0.4
SMG6-213ENST00000573166 RTN4Q9NQC3 1192 aaKnown RBP12.54□□□□□ -0.4
SMG6-213ENST00000573166 VWDEQ8N2E2 1590 aa12.54□□□□□ -0.4
SMG6-213ENST00000573166 ANKARQ7Z5J8 1434 aa12.54□□□□□ -0.4
SMG6-213ENST00000573166 HMGB2P26583 209 aaKnown RBP12.53□□□□□ -0.4
SMG6-213ENST00000573166 DEKP35659 375 aaKnown RBP12.53□□□□□ -0.4
SMG6-213ENST00000573166 CCT4P50991 539 aaKnown RBP12.53□□□□□ -0.4
SMG6-213ENST00000573166 ARHGEF25Q86VW2 580 aa12.53□□□□□ -0.4
SMG6-213ENST00000573166 TRPM1Q7Z4N2 1603 aa12.53□□□□□ -0.4
SMG6-213ENST00000573166 HSP90B1P14625 803 aaKnown RBP12.53□□□□□ -0.4
SMG6-213ENST00000573166 BICDL1Q6ZP65 573 aa12.53□□□□□ -0.4
SMG6-213ENST00000573166 DBF4Q9UBU7 674 aaPredicted RBP12.53□□□□□ -0.4
SMG6-213ENST00000573166 HTATSF1O43719 755 aaKnown RBP12.52□□□□□ -0.4
SMG6-213ENST00000573166 BECN1Q14457 450 aa12.52□□□□□ -0.4
SMG6-213ENST00000573166 DCAF5Q96JK2 942 aa12.52□□□□□ -0.4
SMG6-213ENST00000573166 CDCA7Q9BWT1 371 aaPredicted RBP12.52□□□□□ -0.4
SMG6-213ENST00000573166 RARSP54136 660 aaKnown RBP12.52□□□□□ -0.41
SMG6-213ENST00000573166 CERKQ8TCT0 537 aa12.52□□□□□ -0.41
SMG6-213ENST00000573166 C1orf115Q9H7X2 142 aa12.52□□□□□ -0.41
SMG6-213ENST00000573166 PPP1R1BQ9UD71 204 aaPredicted RBP12.52□□□□□ -0.41
SMG6-213ENST00000573166 IL16Q14005 1332 aa12.52□□□□□ -0.41
SMG6-213ENST00000573166 SNRPA1P09661 255 aaKnown RBP12.51□□□□□ -0.41
SMG6-213ENST00000573166 NOP58Q9Y2X3 529 aaKnown RBP12.51□□□□□ -0.41
SMG6-213ENST00000573166 SPATA31A3Q5VYP0 1347 aa12.51□□□□□ -0.41
SMG6-213ENST00000573166 PCDH11XQ9BZA7 1347 aa12.51□□□□□ -0.41
SMG6-213ENST00000573166 PCDH11YQ9BZA8 1340 aa12.51□□□□□ -0.41
SMG6-213ENST00000573166 TEX13AQ9BXU3 409 aaPredicted RBP12.51□□□□□ -0.41
SMG6-213ENST00000573166 DEPDC5O75140 1603 aa12.51□□□□□ -0.41
SMG6-213ENST00000573166 IFIT2P09913 472 aaKnown RBP12.51□□□□□ -0.41
SMG6-213ENST00000573166 HSP90AB4PQ58FF6 505 aa12.51□□□□□ -0.41
SMG6-213ENST00000573166 LARP1Q6PKG0 1096 aaKnown RBP12.51□□□□□ -0.41
SMG6-213ENST00000573166 REREQ9P2R6 1566 aa12.51□□□□□ -0.41
SMG6-213ENST00000573166 GNAI2P04899 355 aa12.51□□□□□ -0.41
SMG6-213ENST00000573166 MAP3K5Q99683 1374 aa12.5□□□□□ -0.41
SMG6-213ENST00000573166 SURF6O75683 361 aaKnown RBP12.5□□□□□ -0.41
SMG6-213ENST00000573166 KIF13AQ9H1H9 1805 aa12.5□□□□□ -0.41
SMG6-213ENST00000573166 ZPR1O75312 459 aa12.5□□□□□ -0.41
SMG6-213ENST00000573166 ANXA1P04083 346 aa12.5□□□□□ -0.41
SMG6-213ENST00000573166 AAMPQ13685 434 aa12.5□□□□□ -0.41
SMG6-213ENST00000573166 MCCP23508 829 aa12.5□□□□□ -0.41
SMG6-213ENST00000573166 CCDC27Q2M243 656 aa12.5□□□□□ -0.41
SMG6-213ENST00000573166 ALDH1L2Q3SY69 923 aa12.5□□□□□ -0.41
SMG6-213ENST00000573166 VPS37DQ86XT2 251 aa12.5□□□□□ -0.41
SMG6-213ENST00000573166 RILPL2Q969X0 211 aa12.49□□□□□ -0.41
SMG6-213ENST00000573166 NAP1L2Q9ULW6 460 aaPredicted RBP12.49□□□□□ -0.41
SMG6-213ENST00000573166 PTCH1Q13635 1447 aa12.49□□□□□ -0.41
SMG6-213ENST00000573166 INSRP06213 1382 aa12.49□□□□□ -0.41
SMG6-213ENST00000573166 BCL11BQ9C0K0 894 aaPredicted RBP12.49□□□□□ -0.41
SMG6-213ENST00000573166 MROH1Q8NDA8 1641 aa12.49□□□□□ -0.41
SMG6-213ENST00000573166 RNMTO43148 476 aaKnown RBP12.49□□□□□ -0.41
SMG6-213ENST00000573166 SMARCC1Q92922 1105 aaPredicted RBP12.49□□□□□ -0.41
SMG6-213ENST00000573166 NEUROD6Q96NK8 337 aa12.49□□□□□ -0.41
SMG6-213ENST00000573166 LNPKQ9C0E8 428 aa12.49□□□□□ -0.41
SMG6-213ENST00000573166 HYPKQ9NX55 129 aa12.49□□□□□ -0.41
SMG6-213ENST00000573166 NKTRP30414 1462 aaKnown RBP12.48□□□□□ -0.41
SMG6-213ENST00000573166 F6X3S4 739 aa12.48□□□□□ -0.41
SMG6-213ENST00000573166 ZBTB3Q9H5J0 574 aa12.48□□□□□ -0.41
SMG6-213ENST00000573166 ZNF652Q9Y2D9 606 aa12.48□□□□□ -0.41
SMG6-213ENST00000573166 SETBP1Q9Y6X0 1596 aa12.48□□□□□ -0.41
SMG6-213ENST00000573166 ATP6V1AP38606 617 aa12.48□□□□□ -0.41
SMG6-213ENST00000573166 FLIIQ13045 1269 aa12.48□□□□□ -0.41
SMG6-213ENST00000573166 MVPQ14764 893 aaKnown RBP12.48□□□□□ -0.41
SMG6-213ENST00000573166 AK7Q96M32 723 aa12.48□□□□□ -0.41
SMG6-213ENST00000573166 TMEM57Q8N5G2 664 aa12.47□□□□□ -0.41
SMG6-213ENST00000573166 TAOK2Q9UL54 1235 aa12.47□□□□□ -0.41
SMG6-213ENST00000573166 AATKQ6ZMQ8 1374 aa12.47□□□□□ -0.41
SMG6-213ENST00000573166 DDRGK1Q96HY6 314 aa12.47□□□□□ -0.41
SMG6-213ENST00000573166 C1orf167Q5SNV9 1468 aa12.47□□□□□ -0.41
SMG6-213ENST00000573166 MYD88Q99836 296 aa12.47□□□□□ -0.41
SMG6-213ENST00000573166 LAMC1P11047 1609 aa12.46□□□□□ -0.41
SMG6-213ENST00000573166 PTPRUQ92729 1446 aa12.46□□□□□ -0.41
SMG6-213ENST00000573166 C8orf58Q8NAV2 365 aa12.46□□□□□ -0.41
SMG6-213ENST00000573166 LGR6Q9HBX8 967 aa12.46□□□□□ -0.41
SMG6-213ENST00000573166 DNAAF4Q8WXU2 420 aa12.46□□□□□ -0.42
SMG6-213ENST00000573166 CCDC85AQ96PX6 553 aaPredicted RBP12.46□□□□□ -0.42
SMG6-213ENST00000573166 TMEM131LA2VDJ0 1609 aa12.45□□□□□ -0.42
SMG6-213ENST00000573166 KRT24Q2M2I5 525 aa12.45□□□□□ -0.42
SMG6-213ENST00000573166 CLASRPQ8N2M8 674 aaKnown RBP12.45□□□□□ -0.42
SMG6-213ENST00000573166 QTRT2Q9H974 415 aaKnown RBP12.45□□□□□ -0.42
SMG6-213ENST00000573166 TULP4Q9NRJ4 1543 aa12.45□□□□□ -0.42
SMG6-213ENST00000573166 PRIM1P49642 420 aaKnown RBP12.45□□□□□ -0.42
SMG6-213ENST00000573166 MFAP1P55081 439 aaKnown RBP12.45□□□□□ -0.42
SMG6-213ENST00000573166 PI4KAP2A4QPH2 592 aa12.45□□□□□ -0.42
SMG6-213ENST00000573166 PHF14O94880 888 aa12.45□□□□□ -0.42
SMG6-213ENST00000573166 GPTP24298 496 aa12.45□□□□□ -0.42
SMG6-213ENST00000573166 PI4KAP1Q8N8J0 262 aa12.45□□□□□ -0.42
SMG6-213ENST00000573166 CNNM1Q9NRU3 951 aa12.45□□□□□ -0.42
SMG6-213ENST00000573166 ERBB3P21860 1342 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms