RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 KCNQ4P56696 695 aa25.16■■□□□ 1.62
CHD3-214ENST00000572579 CCER1Q8TC90 406 aaPredicted RBP25.16■■□□□ 1.62
CHD3-214ENST00000572579 CASZ1Q86V15 1759 aa25.16■■□□□ 1.62
CHD3-214ENST00000572579 ATF5Q9Y2D1 282 aaPredicted RBP25.15■■□□□ 1.62
CHD3-214ENST00000572579 FLT4P35916 1363 aa25.15■■□□□ 1.62
CHD3-214ENST00000572579 POLR3GLQ9BT43 218 aa25.13■■□□□ 1.61
CHD3-214ENST00000572579 KIF24Q5T7B8 1368 aa25.13■■□□□ 1.61
CHD3-214ENST00000572579 EIF4G2P78344 907 aaKnown RBP eCLIP25.12■■□□□ 1.61
CHD3-214ENST00000572579 AKT1S1Q96B36 256 aa25.12■■□□□ 1.61
CHD3-214ENST00000572579 SYTL4Q96C24 671 aaPredicted RBP25.12■■□□□ 1.61
CHD3-214ENST00000572579 SGIP1Q9BQI5 828 aa25.12■■□□□ 1.61
CHD3-214ENST00000572579 BTAF1O14981 1849 aa25.12■■□□□ 1.61
CHD3-214ENST00000572579 POLKQ9UBT6 870 aa25.11■■□□□ 1.61
CHD3-214ENST00000572579 PAPPAQ13219 1627 aa25.11■■□□□ 1.61
CHD3-214ENST00000572579 RAPGEF4Q8WZA2 1011 aa25.1■■□□□ 1.61
CHD3-214ENST00000572579 PPP1R1BQ9UD71 204 aaPredicted RBP25.1■■□□□ 1.61
CHD3-214ENST00000572579 CGNL1Q0VF96 1302 aa25.1■■□□□ 1.61
CHD3-214ENST00000572579 SHANK3Q9BYB0 1731 aa25.09■■□□□ 1.61
CHD3-214ENST00000572579 PPM1GO15355 546 aaPredicted RBP25.09■■□□□ 1.61
CHD3-214ENST00000572579 TATP17735 454 aaPredicted RBP25.09■■□□□ 1.61
CHD3-214ENST00000572579 WASHC2AQ641Q2 1341 aa25.09■■□□□ 1.61
CHD3-214ENST00000572579 KIF20BQ96Q89 1820 aa25.08■■□□□ 1.61
CHD3-214ENST00000572579 CYP27B1O15528 508 aa25.08■■□□□ 1.61
CHD3-214ENST00000572579 PANK3Q9H999 370 aa25.08■■□□□ 1.61
CHD3-214ENST00000572579 SMG6Q86US8 1419 aaKnown RBP25.07■■□□□ 1.6
CHD3-214ENST00000572579 SLC27A3Q5K4L6 730 aa25.07■■□□□ 1.6
CHD3-214ENST00000572579 EYA1Q99502 592 aa25.06■■□□□ 1.6
CHD3-214ENST00000572579 MTFR1LQ9H019 292 aa25.06■■□□□ 1.6
CHD3-214ENST00000572579 NCAPD2Q15021 1401 aa25.05■■□□□ 1.6
CHD3-214ENST00000572579 KAT6BQ8WYB5 2073 aa25.05■■□□□ 1.6
CHD3-214ENST00000572579 TNNT2P45379 298 aaPredicted RBP25.05■■□□□ 1.6
CHD3-214ENST00000572579 PNPLA7Q6ZV29 1317 aa25.02■■□□□ 1.6
CHD3-214ENST00000572579 UTRNP46939 3433 aa25.01■■□□□ 1.59
CHD3-214ENST00000572579 EIF4A2Q14240 407 aaKnown RBP25■■□□□ 1.59
CHD3-214ENST00000572579 PCDH11XQ9BZA7 1347 aa25■■□□□ 1.59
CHD3-214ENST00000572579 PCDH11YQ9BZA8 1340 aa25■■□□□ 1.59
CHD3-214ENST00000572579 DOT1LQ8TEK3 1739 aa24.99■■□□□ 1.59
CHD3-214ENST00000572579 FHDC1Q9C0D6 1143 aaPredicted RBP24.99■■□□□ 1.59
CHD3-214ENST00000572579 CCNL1Q9UK58 526 aaPredicted RBP24.99■■□□□ 1.59
CHD3-214ENST00000572579 NKX1-1Q15270 411 aaPredicted RBP24.98■■□□□ 1.59
CHD3-214ENST00000572579 SYT17Q9BSW7 474 aa24.98■■□□□ 1.59
CHD3-214ENST00000572579 MPRIPQ6WCQ1 1025 aa24.96■■□□□ 1.59
CHD3-214ENST00000572579 ANKRD26Q9UPS8 1709 aa24.95■■□□□ 1.59
CHD3-214ENST00000572579 PIGBQ92521 554 aa24.95■■□□□ 1.58
CHD3-214ENST00000572579 TFCP2L1Q9NZI6 479 aa24.95■■□□□ 1.58
CHD3-214ENST00000572579 ARXQ96QS3 562 aa24.94■■□□□ 1.58
CHD3-214ENST00000572579 COL23A1Q86Y22 540 aaPredicted RBP24.92■■□□□ 1.58
CHD3-214ENST00000572579 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.92■■□□□ 1.58
CHD3-214ENST00000572579 LY75O60449 1722 aa24.92■■□□□ 1.58
CHD3-214ENST00000572579 SLC16A10Q8TF71 515 aa24.91■■□□□ 1.58
CHD3-214ENST00000572579 SPG7Q9UQ90 795 aa24.91■■□□□ 1.58
CHD3-214ENST00000572579 MAP2P11137 1827 aaKnown RBP24.91■■□□□ 1.58
CHD3-214ENST00000572579 AMIGO3Q86WK7 504 aa24.9■■□□□ 1.58
CHD3-214ENST00000572579 PALLDQ8WX93 1383 aa24.9■■□□□ 1.58
CHD3-214ENST00000572579 KIF7Q2M1P5 1343 aa24.89■■□□□ 1.58
CHD3-214ENST00000572579 IGSF1Q8N6C5 1336 aa24.89■■□□□ 1.58
CHD3-214ENST00000572579 PHKG2P15735 406 aa24.89■■□□□ 1.58
CHD3-214ENST00000572579 AMER1Q5JTC6 1135 aaPredicted RBP24.89■■□□□ 1.58
CHD3-214ENST00000572579 TOGARAM1Q9Y4F4 1720 aa24.88■■□□□ 1.57
CHD3-214ENST00000572579 PKD1L3Q7Z443 1732 aa24.87■■□□□ 1.57
CHD3-214ENST00000572579 YY1P25490 414 aa24.87■■□□□ 1.57
CHD3-214ENST00000572579 SMIM5Q71RC9 77 aa24.87■■□□□ 1.57
CHD3-214ENST00000572579 MORC1Q86VD1 984 aa24.87■■□□□ 1.57
CHD3-214ENST00000572579 AEBP1Q8IUX7 1158 aa24.85■■□□□ 1.57
CHD3-214ENST00000572579 ASAP1Q9ULH1 1129 aa24.85■■□□□ 1.57
CHD3-214ENST00000572579 MAP3K5Q99683 1374 aa24.84■■□□□ 1.57
CHD3-214ENST00000572579 PER1O15534 1290 aaPredicted RBP24.84■■□□□ 1.57
CHD3-214ENST00000572579 IFNL2Q8IZJ0 200 aa24.84■■□□□ 1.57
CHD3-214ENST00000572579 KNSTRNQ9Y448 316 aa24.84■■□□□ 1.57
CHD3-214ENST00000572579 SMARCC1Q92922 1105 aaPredicted RBP24.83■■□□□ 1.57
CHD3-214ENST00000572579 TUBGCP6Q96RT7 1819 aa24.83■■□□□ 1.57
CHD3-214ENST00000572579 GOLGB1Q14789 3259 aaKnown RBP24.81■■□□□ 1.56
CHD3-214ENST00000572579 IL13P35225 146 aa24.81■■□□□ 1.56
CHD3-214ENST00000572579 ATG3Q9NT62 314 aa24.81■■□□□ 1.56
CHD3-214ENST00000572579 QSER1Q2KHR3 1735 aa24.81■■□□□ 1.56
CHD3-214ENST00000572579 LOC102724428A0A0B4J2F2 783 aa24.8■■□□□ 1.56
CHD3-214ENST00000572579 SIK1P57059 783 aa24.8■■□□□ 1.56
CHD3-214ENST00000572579 ITPK1Q13572 414 aa24.8■■□□□ 1.56
CHD3-214ENST00000572579 MSL1Q68DK7 614 aa24.8■■□□□ 1.56
CHD3-214ENST00000572579 LINC00116Q8NCU8 138 aa24.8■■□□□ 1.56
CHD3-214ENST00000572579 TMOD3Q9NYL9 352 aa24.8■■□□□ 1.56
CHD3-214ENST00000572579 COL24A1Q17RW2 1714 aa24.79■■□□□ 1.56
CHD3-214ENST00000572579 DCAF8L1A6NGE4 600 aa24.79■■□□□ 1.56
CHD3-214ENST00000572579 MSH5O43196 834 aa24.79■■□□□ 1.56
CHD3-214ENST00000572579 POLD1P28340 1107 aa24.79■■□□□ 1.56
CHD3-214ENST00000572579 NLGN2Q8NFZ4 835 aa24.79■■□□□ 1.56
CHD3-214ENST00000572579 SLC4A9Q96Q91 983 aa24.78■■□□□ 1.56
CHD3-214ENST00000572579 ITGB4P16144 1822 aa24.77■■□□□ 1.56
CHD3-214ENST00000572579 PLEKHO1Q53GL0 409 aaPredicted RBP24.75■■□□□ 1.55
CHD3-214ENST00000572579 SULT6B1Q6IMI4 303 aa24.75■■□□□ 1.55
CHD3-214ENST00000572579 KLHL34Q8N239 644 aa24.75■■□□□ 1.55
CHD3-214ENST00000572579 PLEKHG2Q9H7P9 1386 aa24.75■■□□□ 1.55
CHD3-214ENST00000572579 MTHFSP49914 203 aa24.74■■□□□ 1.55
CHD3-214ENST00000572579 KDM6AO15550 1401 aaPredicted RBP24.74■■□□□ 1.55
CHD3-214ENST00000572579 C5P01031 1676 aa24.73■■□□□ 1.55
CHD3-214ENST00000572579 ERVV-2B6SEH9 535 aa24.73■■□□□ 1.55
CHD3-214ENST00000572579 ZNF530Q6P9A1 599 aaPredicted RBP24.73■■□□□ 1.55
CHD3-214ENST00000572579 DCAF5Q96JK2 942 aa24.73■■□□□ 1.55
CHD3-214ENST00000572579 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.72■■□□□ 1.55
CHD3-214ENST00000572579 ATP6V1AP38606 617 aa24.72■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms