RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 ZSCAN30Q86W11 494 aa13.2□□□□□ -0.3
CCDC40-207ENST00000572253 ZRANB1Q9UGI0 708 aa13.2□□□□□ -0.3
CCDC40-207ENST00000572253 RRP9O43818 475 aaKnown RBP13.2□□□□□ -0.3
CCDC40-207ENST00000572253 CAVIN1Q6NZI2 390 aaKnown RBP13.2□□□□□ -0.3
CCDC40-207ENST00000572253 C16orf71Q8IYS4 520 aaPredicted RBP13.2□□□□□ -0.3
CCDC40-207ENST00000572253 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.2□□□□□ -0.3
CCDC40-207ENST00000572253 ERC2O15083 957 aa13.2□□□□□ -0.3
CCDC40-207ENST00000572253 ZNF445P59923 1031 aa13.2□□□□□ -0.3
CCDC40-207ENST00000572253 ERBB4Q15303 1308 aa13.19□□□□□ -0.3
CCDC40-207ENST00000572253 SULT6B1Q6IMI4 303 aa13.19□□□□□ -0.3
CCDC40-207ENST00000572253 KIAA0232Q92628 1395 aa13.18□□□□□ -0.3
CCDC40-207ENST00000572253 MCCP23508 829 aa13.18□□□□□ -0.3
CCDC40-207ENST00000572253 RICTORQ6R327 1708 aa13.18□□□□□ -0.3
CCDC40-207ENST00000572253 HDGFP51858 240 aaKnown RBP13.18□□□□□ -0.3
CCDC40-207ENST00000572253 CHL1O00533 1208 aa13.18□□□□□ -0.3
CCDC40-207ENST00000572253 SMARCA5O60264 1052 aaPredicted RBP13.17□□□□□ -0.3
CCDC40-207ENST00000572253 TXNDC2Q86VQ3 553 aa13.17□□□□□ -0.3
CCDC40-207ENST00000572253 ZSCAN23Q3MJ62 389 aa13.17□□□□□ -0.3
CCDC40-207ENST00000572253 OTUD7AQ8TE49 926 aaPredicted RBP13.17□□□□□ -0.3
CCDC40-207ENST00000572253 RTL1A6NKG5 1358 aa13.17□□□□□ -0.3
CCDC40-207ENST00000572253 MSH6P52701 1360 aa13.17□□□□□ -0.3
CCDC40-207ENST00000572253 LMBRD1Q9NUN5 540 aa13.17□□□□□ -0.3
CCDC40-207ENST00000572253 ATP10DQ9P241 1426 aa13.16□□□□□ -0.3
CCDC40-207ENST00000572253 PRPF40AO75400 957 aaKnown RBP13.16□□□□□ -0.3
CCDC40-207ENST00000572253 CYP2E1P05181 493 aaPredicted RBP13.16□□□□□ -0.3
CCDC40-207ENST00000572253 MCM2P49736 904 aa13.16□□□□□ -0.3
CCDC40-207ENST00000572253 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.16□□□□□ -0.3
CCDC40-207ENST00000572253 CCT4P50991 539 aaKnown RBP13.16□□□□□ -0.3
CCDC40-207ENST00000572253 MEIS3Q99687 375 aa13.16□□□□□ -0.3
CCDC40-207ENST00000572253 SLC4A2P04920 1241 aa13.16□□□□□ -0.3
CCDC40-207ENST00000572253 RTF1Q92541 710 aaKnown RBP13.16□□□□□ -0.3
CCDC40-207ENST00000572253 A2ML1A8K2U0 1454 aa13.16□□□□□ -0.3
CCDC40-207ENST00000572253 EIF4A2Q14240 407 aaKnown RBP13.15□□□□□ -0.3
CCDC40-207ENST00000572253 HS1BP3Q53T59 392 aa13.15□□□□□ -0.3
CCDC40-207ENST00000572253 SLC4A10Q6U841 1118 aa13.15□□□□□ -0.3
CCDC40-207ENST00000572253 MCM10Q7L590 875 aa13.15□□□□□ -0.3
CCDC40-207ENST00000572253 AEBP1Q8IUX7 1158 aa13.15□□□□□ -0.3
CCDC40-207ENST00000572253 KRT24Q2M2I5 525 aa13.15□□□□□ -0.3
CCDC40-207ENST00000572253 MBD3O95983 291 aa13.14□□□□□ -0.31
CCDC40-207ENST00000572253 SIRT1Q96EB6 747 aa13.14□□□□□ -0.31
CCDC40-207ENST00000572253 STK31Q9BXU1 1019 aa13.14□□□□□ -0.31
CCDC40-207ENST00000572253 ESF1Q9H501 851 aaKnown RBP13.14□□□□□ -0.31
CCDC40-207ENST00000572253 NEK4P51957 841 aa13.13□□□□□ -0.31
CCDC40-207ENST00000572253 GNAI2P04899 355 aa13.13□□□□□ -0.31
CCDC40-207ENST00000572253 ZGPATQ8N5A5 531 aaKnown RBP13.13□□□□□ -0.31
CCDC40-207ENST00000572253 DLG5Q8TDM6 1919 aa13.13□□□□□ -0.31
CCDC40-207ENST00000572253 PDE1AP54750 535 aa13.13□□□□□ -0.31
CCDC40-207ENST00000572253 TSPYL4Q9UJ04 414 aa13.13□□□□□ -0.31
CCDC40-207ENST00000572253 KIAA1211Q6ZU35 1233 aa13.13□□□□□ -0.31
CCDC40-207ENST00000572253 OSBPL3Q9H4L5 887 aa13.13□□□□□ -0.31
CCDC40-207ENST00000572253 SYAP1Q96A49 352 aaPredicted RBP13.12□□□□□ -0.31
CCDC40-207ENST00000572253 CPS1P31327 1500 aa13.12□□□□□ -0.31
CCDC40-207ENST00000572253 KNDC1Q76NI1 1749 aa13.12□□□□□ -0.31
CCDC40-207ENST00000572253 PKP1Q13835 747 aa13.12□□□□□ -0.31
CCDC40-207ENST00000572253 RGS12O14924 1447 aa13.12□□□□□ -0.31
CCDC40-207ENST00000572253 TTC21BQ7Z4L5 1316 aa13.12□□□□□ -0.31
CCDC40-207ENST00000572253 OFD1O75665 1012 aa13.12□□□□□ -0.31
CCDC40-207ENST00000572253 NCKAP5LQ9HCH0 1330 aa13.11□□□□□ -0.31
CCDC40-207ENST00000572253 GNAI3P08754 354 aa13.11□□□□□ -0.31
CCDC40-207ENST00000572253 MLECQ14165 292 aa13.11□□□□□ -0.31
CCDC40-207ENST00000572253 RBSNQ9H1K0 784 aa13.11□□□□□ -0.31
CCDC40-207ENST00000572253 METP08581 1390 aa13.1□□□□□ -0.31
CCDC40-207ENST00000572253 PRIM1P49642 420 aaKnown RBP13.1□□□□□ -0.31
CCDC40-207ENST00000572253 LRRCC1Q9C099 1032 aa13.1□□□□□ -0.31
CCDC40-207ENST00000572253 LRSAM1Q6UWE0 723 aa13.1□□□□□ -0.31
CCDC40-207ENST00000572253 TMX3Q96JJ7 454 aa13.1□□□□□ -0.31
CCDC40-207ENST00000572253 TRIM6-TRIM34B2RNG4 842 aa13.1□□□□□ -0.31
CCDC40-207ENST00000572253 FOXD4L5Q5VV16 416 aaPredicted RBP13.1□□□□□ -0.31
CCDC40-207ENST00000572253 FOXD4L4Q8WXT5 416 aaPredicted RBP13.1□□□□□ -0.31
CCDC40-207ENST00000572253 ESYT1Q9BSJ8 1104 aa13.09□□□□□ -0.31
CCDC40-207ENST00000572253 RBM27Q9P2N5 1060 aaKnown RBP13.09□□□□□ -0.31
CCDC40-207ENST00000572253 AK9Q5TCS8 1911 aa13.09□□□□□ -0.31
CCDC40-207ENST00000572253 RIMBP3CA6NJZ7 1639 aa13.09□□□□□ -0.31
CCDC40-207ENST00000572253 RIMBP3BA6NNM3 1639 aa13.09□□□□□ -0.31
CCDC40-207ENST00000572253 RIMBP3Q9UFD9 1639 aa13.09□□□□□ -0.31
CCDC40-207ENST00000572253 ANAPC15P60006 121 aa13.09□□□□□ -0.31
CCDC40-207ENST00000572253 ANO2Q9NQ90 1003 aa13.09□□□□□ -0.31
CCDC40-207ENST00000572253 SRCIN1Q9C0H9 1055 aa13.09□□□□□ -0.31
CCDC40-207ENST00000572253 CCDC39Q9UFE4 941 aa13.09□□□□□ -0.31
CCDC40-207ENST00000572253 EXOC6BQ9Y2D4 811 aa13.09□□□□□ -0.31
CCDC40-207ENST00000572253 F6X3S4 739 aa13.08□□□□□ -0.31
CCDC40-207ENST00000572253 MX1P20591 662 aa13.08□□□□□ -0.31
CCDC40-207ENST00000572253 TERF1P54274 439 aa13.08□□□□□ -0.31
CCDC40-207ENST00000572253 CSPP1Q1MSJ5 1256 aa13.08□□□□□ -0.31
CCDC40-207ENST00000572253 GPT2Q8TD30 523 aa13.08□□□□□ -0.31
CCDC40-207ENST00000572253 RILPL2Q969X0 211 aa13.08□□□□□ -0.31
CCDC40-207ENST00000572253 NOL7Q9UMY1 257 aaKnown RBP13.08□□□□□ -0.31
CCDC40-207ENST00000572253 PHF14O94880 888 aa13.08□□□□□ -0.32
CCDC40-207ENST00000572253 MCM5P33992 734 aa13.08□□□□□ -0.32
CCDC40-207ENST00000572253 MON2Q7Z3U7 1717 aa13.08□□□□□ -0.32
CCDC40-207ENST00000572253 SYCE3A1L190 88 aa13.08□□□□□ -0.32
CCDC40-207ENST00000572253 SOX12O15370 315 aa13.08□□□□□ -0.32
CCDC40-207ENST00000572253 HSP90AB2PQ58FF8 381 aa13.08□□□□□ -0.32
CCDC40-207ENST00000572253 ZDHHC9Q9Y397 364 aa13.08□□□□□ -0.32
CCDC40-207ENST00000572253 SPATA31D1Q6ZQQ2 1576 aa13.08□□□□□ -0.32
CCDC40-207ENST00000572253 INTS4Q96HW7 963 aaKnown RBP13.07□□□□□ -0.32
CCDC40-207ENST00000572253 MIS18AQ9NYP9 233 aa13.07□□□□□ -0.32
CCDC40-207ENST00000572253 NRKQ7Z2Y5 1582 aa13.07□□□□□ -0.32
CCDC40-207ENST00000572253 PTMAP06454 111 aaKnown RBP13.07□□□□□ -0.32
CCDC40-207ENST00000572253 FKBP5Q13451 457 aaPredicted RBP13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms