RNA–Protein interactions for RNA: ENST00000571190.1

CIITA-206, Transcript of class II major histocompatibility complex transactivator, humanhuman

Gene CIITA, Length 479 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-206ENST00000571190 SLC27A3Q5K4L6 730 aa24.55■■□□□ 1.52
CIITA-206ENST00000571190 MYOM1P52179 1685 aa24.54■■□□□ 1.52
CIITA-206ENST00000571190 DCAF8L1A6NGE4 600 aa24.54■■□□□ 1.52
CIITA-206ENST00000571190 HSP90AB2PQ58FF8 381 aa24.54■■□□□ 1.52
CIITA-206ENST00000571190 SYTL4Q96C24 671 aaPredicted RBP24.54■■□□□ 1.52
CIITA-206ENST00000571190 BTAF1O14981 1849 aa24.53■■□□□ 1.52
CIITA-206ENST00000571190 CDCA8Q53HL2 280 aa24.52■■□□□ 1.52
CIITA-206ENST00000571190 ARXQ96QS3 562 aa24.51■■□□□ 1.51
CIITA-206ENST00000571190 INSRP06213 1382 aa24.51■■□□□ 1.51
CIITA-206ENST00000571190 PNPLA7Q6ZV29 1317 aa24.5■■□□□ 1.51
CIITA-206ENST00000571190 CGNL1Q0VF96 1302 aa24.49■■□□□ 1.51
CIITA-206ENST00000571190 RAPGEF4Q8WZA2 1011 aa24.48■■□□□ 1.51
CIITA-206ENST00000571190 FLT4P35916 1363 aa24.47■■□□□ 1.51
CIITA-206ENST00000571190 TIMELESSQ9UNS1 1208 aa24.47■■□□□ 1.51
CIITA-206ENST00000571190 EMILIN1Q9Y6C2 1016 aa24.47■■□□□ 1.51
CIITA-206ENST00000571190 KIF24Q5T7B8 1368 aa24.46■■□□□ 1.51
CIITA-206ENST00000571190 SLC16A10Q8TF71 515 aa24.46■■□□□ 1.51
CIITA-206ENST00000571190 SMG6Q86US8 1419 aaKnown RBP24.45■■□□□ 1.51
CIITA-206ENST00000571190 NSD3Q9BZ95 1437 aa24.45■■□□□ 1.51
CIITA-206ENST00000571190 MAP3K5Q99683 1374 aa24.45■■□□□ 1.5
CIITA-206ENST00000571190 TATP17735 454 aaPredicted RBP24.45■■□□□ 1.5
CIITA-206ENST00000571190 TFCP2L1Q9NZI6 479 aa24.45■■□□□ 1.5
CIITA-206ENST00000571190 CCNL1Q9UK58 526 aaPredicted RBP24.44■■□□□ 1.5
CIITA-206ENST00000571190 SHANK3Q9BYB0 1731 aa24.44■■□□□ 1.5
CIITA-206ENST00000571190 RGPD2P0DJD1 1756 aa24.42■■□□□ 1.5
CIITA-206ENST00000571190 CYP27B1O15528 508 aa24.42■■□□□ 1.5
CIITA-206ENST00000571190 PCDH11XQ9BZA7 1347 aa24.4■■□□□ 1.5
CIITA-206ENST00000571190 PCDH11YQ9BZA8 1340 aa24.4■■□□□ 1.5
CIITA-206ENST00000571190 DOT1LQ8TEK3 1739 aa24.4■■□□□ 1.5
CIITA-206ENST00000571190 NCAPD2Q15021 1401 aa24.38■■□□□ 1.49
CIITA-206ENST00000571190 CLSPNQ9HAW4 1339 aa24.37■■□□□ 1.49
CIITA-206ENST00000571190 COL23A1Q86Y22 540 aaPredicted RBP24.37■■□□□ 1.49
CIITA-206ENST00000571190 WASHC2AQ641Q2 1341 aa24.36■■□□□ 1.49
CIITA-206ENST00000571190 POLD1P28340 1107 aa24.36■■□□□ 1.49
CIITA-206ENST00000571190 PCGF6Q9BYE7 350 aa24.36■■□□□ 1.49
CIITA-206ENST00000571190 PPM1GO15355 546 aaPredicted RBP24.35■■□□□ 1.49
CIITA-206ENST00000571190 ZNF784Q8NCA9 323 aaPredicted RBP24.35■■□□□ 1.49
CIITA-206ENST00000571190 POLKQ9UBT6 870 aa24.35■■□□□ 1.49
CIITA-206ENST00000571190 MPRIPQ6WCQ1 1025 aa24.34■■□□□ 1.49
CIITA-206ENST00000571190 EYA1Q99502 592 aa24.34■■□□□ 1.49
CIITA-206ENST00000571190 LY75O60449 1722 aa24.34■■□□□ 1.49
CIITA-206ENST00000571190 PALLDQ8WX93 1383 aa24.33■■□□□ 1.49
CIITA-206ENST00000571190 NKX1-1Q15270 411 aaPredicted RBP24.33■■□□□ 1.49
CIITA-206ENST00000571190 KLHL34Q8N239 644 aa24.32■■□□□ 1.48
CIITA-206ENST00000571190 NLGN2Q8NFZ4 835 aa24.32■■□□□ 1.48
CIITA-206ENST00000571190 KIF20BQ96Q89 1820 aa24.31■■□□□ 1.48
CIITA-206ENST00000571190 PIGBQ92521 554 aa24.31■■□□□ 1.48
CIITA-206ENST00000571190 QSER1Q2KHR3 1735 aa24.3■■□□□ 1.48
CIITA-206ENST00000571190 UTRNP46939 3433 aa24.29■■□□□ 1.48
CIITA-206ENST00000571190 MSH5O43196 834 aa24.29■■□□□ 1.48
CIITA-206ENST00000571190 GPR162Q16538 588 aa24.29■■□□□ 1.48
CIITA-206ENST00000571190 POLR3GLQ9BT43 218 aa24.29■■□□□ 1.48
CIITA-206ENST00000571190 COL24A1Q17RW2 1714 aa24.28■■□□□ 1.48
CIITA-206ENST00000571190 MSL1Q68DK7 614 aa24.28■■□□□ 1.48
CIITA-206ENST00000571190 AMIGO3Q86WK7 504 aa24.28■■□□□ 1.48
CIITA-206ENST00000571190 SPG7Q9UQ90 795 aa24.28■■□□□ 1.48
CIITA-206ENST00000571190 KAT6BQ8WYB5 2073 aa24.27■■□□□ 1.48
CIITA-206ENST00000571190 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.27■■□□□ 1.48
CIITA-206ENST00000571190 HSPA5P11021 654 aaKnown RBP24.26■■□□□ 1.47
CIITA-206ENST00000571190 EIF4A2Q14240 407 aaKnown RBP24.26■■□□□ 1.47
CIITA-206ENST00000571190 SMARCC1Q92922 1105 aaPredicted RBP24.26■■□□□ 1.47
CIITA-206ENST00000571190 TUBGCP6Q96RT7 1819 aa24.26■■□□□ 1.47
CIITA-206ENST00000571190 TNNT2P45379 298 aaPredicted RBP24.25■■□□□ 1.47
CIITA-206ENST00000571190 EIF4G2P78344 907 aaKnown RBP eCLIP24.24■■□□□ 1.47
CIITA-206ENST00000571190 SMIM5Q71RC9 77 aa24.24■■□□□ 1.47
CIITA-206ENST00000571190 PHKG2P15735 406 aa24.23■■□□□ 1.47
CIITA-206ENST00000571190 TOGARAM1Q9Y4F4 1720 aa24.23■■□□□ 1.47
CIITA-206ENST00000571190 PKD1L3Q7Z443 1732 aa24.22■■□□□ 1.47
CIITA-206ENST00000571190 ANKRD26Q9UPS8 1709 aa24.22■■□□□ 1.47
CIITA-206ENST00000571190 PELP1Q8IZL8 1130 aaKnown RBP24.22■■□□□ 1.47
CIITA-206ENST00000571190 FLAD1Q8NFF5 587 aa24.22■■□□□ 1.47
CIITA-206ENST00000571190 PANK3Q9H999 370 aa24.22■■□□□ 1.47
CIITA-206ENST00000571190 YBX3P16989 372 aaKnown RBP eCLIP24.21■■□□□ 1.47
CIITA-206ENST00000571190 IFNL2Q8IZJ0 200 aa24.21■■□□□ 1.47
CIITA-206ENST00000571190 ASAP1Q9ULH1 1129 aa24.21■■□□□ 1.47
CIITA-206ENST00000571190 LOC102724428A0A0B4J2F2 783 aa24.2■■□□□ 1.46
CIITA-206ENST00000571190 HMGB2P26583 209 aaKnown RBP24.2■■□□□ 1.46
CIITA-206ENST00000571190 SIK1P57059 783 aa24.2■■□□□ 1.46
CIITA-206ENST00000571190 LINC00116Q8NCU8 138 aa24.2■■□□□ 1.46
CIITA-206ENST00000571190 AK7Q96M32 723 aa24.19■■□□□ 1.46
CIITA-206ENST00000571190 TMOD3Q9NYL9 352 aa24.19■■□□□ 1.46
CIITA-206ENST00000571190 IGSF1Q8N6C5 1336 aa24.18■■□□□ 1.46
CIITA-206ENST00000571190 ITPK1Q13572 414 aa24.18■■□□□ 1.46
CIITA-206ENST00000571190 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.17■■□□□ 1.46
CIITA-206ENST00000571190 ATG3Q9NT62 314 aa24.17■■□□□ 1.46
CIITA-206ENST00000571190 C5P01031 1676 aa24.17■■□□□ 1.46
CIITA-206ENST00000571190 PHF14O94880 888 aa24.16■■□□□ 1.46
CIITA-206ENST00000571190 CD2APQ9Y5K6 639 aa24.16■■□□□ 1.46
CIITA-206ENST00000571190 C4BP0C0L5 1744 aa24.14■■□□□ 1.45
CIITA-206ENST00000571190 SSFA2P28290 1259 aa24.14■■□□□ 1.45
CIITA-206ENST00000571190 PLEKHG2Q9H7P9 1386 aa24.14■■□□□ 1.45
CIITA-206ENST00000571190 GRIN3BO60391 1043 aa24.12■■□□□ 1.45
CIITA-206ENST00000571190 ATP6V1AP38606 617 aa24.12■■□□□ 1.45
CIITA-206ENST00000571190 SLC4A9Q96Q91 983 aa24.12■■□□□ 1.45
CIITA-206ENST00000571190 CCER1Q8TC90 406 aaPredicted RBP24.1■■□□□ 1.45
CIITA-206ENST00000571190 KDRP35968 1356 aa24.09■■□□□ 1.45
CIITA-206ENST00000571190 ERVV-2B6SEH9 535 aa24.09■■□□□ 1.45
CIITA-206ENST00000571190 GNPATO15228 680 aa24.09■■□□□ 1.45
CIITA-206ENST00000571190 C1QTNF8P60827 252 aa24.09■■□□□ 1.45
CIITA-206ENST00000571190 MORC1Q86VD1 984 aa24.09■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms