RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 G2E3Q7L622 706 aa12.5□□□□□ -0.41
VPS53-206ENST00000570359 SLKQ9H2G2 1235 aaPredicted RBP12.5□□□□□ -0.41
VPS53-206ENST00000570359 ZNF428Q96B54 188 aa12.5□□□□□ -0.41
VPS53-206ENST00000570359 UPF2Q9HAU5 1272 aaKnown RBP12.49□□□□□ -0.41
VPS53-206ENST00000570359 CHL1O00533 1208 aa12.49□□□□□ -0.41
VPS53-206ENST00000570359 HDAC1Q13547 482 aaPredicted RBP12.49□□□□□ -0.41
VPS53-206ENST00000570359 XRN1Q8IZH2 1706 aaKnown RBP12.49□□□□□ -0.41
VPS53-206ENST00000570359 HSPA2P54652 639 aa12.48□□□□□ -0.41
VPS53-206ENST00000570359 API5Q9BZZ5 524 aaKnown RBP12.48□□□□□ -0.41
VPS53-206ENST00000570359 ZC3H6P61129 1189 aaKnown RBP12.48□□□□□ -0.41
VPS53-206ENST00000570359 AAMPQ13685 434 aa12.48□□□□□ -0.41
VPS53-206ENST00000570359 NALCNQ8IZF0 1738 aa12.48□□□□□ -0.41
VPS53-206ENST00000570359 USP19O94966 1318 aa12.48□□□□□ -0.41
VPS53-206ENST00000570359 ARHGEF10O15013 1369 aa12.47□□□□□ -0.41
VPS53-206ENST00000570359 SIRT2Q8IXJ6 389 aa12.47□□□□□ -0.41
VPS53-206ENST00000570359 IGSF1Q8N6C5 1336 aa12.47□□□□□ -0.41
VPS53-206ENST00000570359 EIF2S2P20042 333 aaKnown RBP12.47□□□□□ -0.41
VPS53-206ENST00000570359 NBPF6Q5VWK0 638 aa12.47□□□□□ -0.41
VPS53-206ENST00000570359 CHD1LQ86WJ1 897 aa12.47□□□□□ -0.41
VPS53-206ENST00000570359 GAS2L2Q8NHY3 880 aa12.47□□□□□ -0.41
VPS53-206ENST00000570359 NBPF4Q96M43 638 aa12.47□□□□□ -0.41
VPS53-206ENST00000570359 GNAT3A8MTJ3 354 aa12.47□□□□□ -0.41
VPS53-206ENST00000570359 MEIS3Q99687 375 aa12.47□□□□□ -0.41
VPS53-206ENST00000570359 ABCC4O15439 1325 aa12.46□□□□□ -0.41
VPS53-206ENST00000570359 FMN2Q9NZ56 1722 aa12.46□□□□□ -0.41
VPS53-206ENST00000570359 MSH6P52701 1360 aa12.46□□□□□ -0.41
VPS53-206ENST00000570359 DEKP35659 375 aaKnown RBP12.46□□□□□ -0.41
VPS53-206ENST00000570359 PIK3R4Q99570 1358 aa12.46□□□□□ -0.42
VPS53-206ENST00000570359 NPHP4O75161 1426 aaPredicted RBP12.46□□□□□ -0.42
VPS53-206ENST00000570359 SMARCA5O60264 1052 aaPredicted RBP12.46□□□□□ -0.42
VPS53-206ENST00000570359 SMC5Q8IY18 1101 aa12.46□□□□□ -0.42
VPS53-206ENST00000570359 FKBP5Q13451 457 aaPredicted RBP12.45□□□□□ -0.42
VPS53-206ENST00000570359 IL17REQ8NFR9 667 aa12.45□□□□□ -0.42
VPS53-206ENST00000570359 ANXA1P04083 346 aa12.45□□□□□ -0.42
VPS53-206ENST00000570359 NUCB1Q02818 461 aa12.45□□□□□ -0.42
VPS53-206ENST00000570359 MPRIPQ6WCQ1 1025 aa12.45□□□□□ -0.42
VPS53-206ENST00000570359 C16orf71Q8IYS4 520 aaPredicted RBP12.45□□□□□ -0.42
VPS53-206ENST00000570359 CABLES1Q8TDN4 633 aa12.45□□□□□ -0.42
VPS53-206ENST00000570359 CRB1P82279 1406 aa12.44□□□□□ -0.42
VPS53-206ENST00000570359 STK31Q9BXU1 1019 aa12.44□□□□□ -0.42
VPS53-206ENST00000570359 LGR6Q9HBX8 967 aa12.44□□□□□ -0.42
VPS53-206ENST00000570359 ANKARQ7Z5J8 1434 aa12.44□□□□□ -0.42
VPS53-206ENST00000570359 ARHGAP45Q92619 1136 aa12.44□□□□□ -0.42
VPS53-206ENST00000570359 OTUD7AQ8TE49 926 aaPredicted RBP12.43□□□□□ -0.42
VPS53-206ENST00000570359 KCNQ3O43525 872 aa12.42□□□□□ -0.42
VPS53-206ENST00000570359 GCP02774 474 aa12.42□□□□□ -0.42
VPS53-206ENST00000570359 ZNF530Q6P9A1 599 aaPredicted RBP12.42□□□□□ -0.42
VPS53-206ENST00000570359 KRT28Q7Z3Y7 464 aa12.42□□□□□ -0.42
VPS53-206ENST00000570359 CHD2O14647 1828 aaKnown RBP12.42□□□□□ -0.42
VPS53-206ENST00000570359 ADGRL3Q9HAR2 1447 aa12.42□□□□□ -0.42
VPS53-206ENST00000570359 MAP3K5Q99683 1374 aa12.41□□□□□ -0.42
VPS53-206ENST00000570359 RGPD1P0DJD0 1748 aa12.41□□□□□ -0.42
VPS53-206ENST00000570359 IP6K1Q92551 441 aa12.41□□□□□ -0.42
VPS53-206ENST00000570359 C22orf23Q9BZE7 217 aa12.41□□□□□ -0.42
VPS53-206ENST00000570359 BRPF1P55201 1214 aaPredicted RBP12.41□□□□□ -0.42
VPS53-206ENST00000570359 TSHZ3Q63HK5 1081 aa12.41□□□□□ -0.42
VPS53-206ENST00000570359 PHAXQ9H814 394 aaKnown RBP12.41□□□□□ -0.42
VPS53-206ENST00000570359 AXIN2Q9Y2T1 843 aa12.41□□□□□ -0.42
VPS53-206ENST00000570359 KDRP35968 1356 aa12.4□□□□□ -0.42
VPS53-206ENST00000570359 CHRNA2Q15822 529 aa12.4□□□□□ -0.42
VPS53-206ENST00000570359 HDGFL1Q5TGJ6 251 aa12.4□□□□□ -0.42
VPS53-206ENST00000570359 ANKRD24Q8TF21 1146 aa12.4□□□□□ -0.42
VPS53-206ENST00000570359 TBC1D32Q96NH3 1257 aa12.4□□□□□ -0.42
VPS53-206ENST00000570359 LTN1O94822 1766 aa12.4□□□□□ -0.42
VPS53-206ENST00000570359 VIRMAQ69YN4 1812 aaKnown RBP12.4□□□□□ -0.42
VPS53-206ENST00000570359 TEFQ10587 303 aa12.4□□□□□ -0.43
VPS53-206ENST00000570359 FLIIQ13045 1269 aa12.4□□□□□ -0.43
VPS53-206ENST00000570359 NFKBIBQ15653 356 aa12.4□□□□□ -0.43
VPS53-206ENST00000570359 ATF3P18847 181 aa12.39□□□□□ -0.43
VPS53-206ENST00000570359 TAF7Q15545 349 aaPredicted RBP12.39□□□□□ -0.43
VPS53-206ENST00000570359 CHMP4BQ9H444 224 aaKnown RBP12.39□□□□□ -0.43
VPS53-206ENST00000570359 EXOC6BQ9Y2D4 811 aa12.39□□□□□ -0.43
VPS53-206ENST00000570359 FRAT2O75474 233 aaPredicted RBP12.39□□□□□ -0.43
VPS53-206ENST00000570359 HAP1P54257 671 aaPredicted RBP12.39□□□□□ -0.43
VPS53-206ENST00000570359 BECN1Q14457 450 aa12.39□□□□□ -0.43
VPS53-206ENST00000570359 GCC1Q96CN9 775 aa12.39□□□□□ -0.43
VPS53-206ENST00000570359 NLRP2Q9NX02 1062 aa12.39□□□□□ -0.43
VPS53-206ENST00000570359 CSB-PGBD3P0DP91 1061 aa12.38□□□□□ -0.43
VPS53-206ENST00000570359 INTS3Q68E01 1043 aaKnown RBP12.38□□□□□ -0.43
VPS53-206ENST00000570359 CEP85Q6P2H3 762 aa12.38□□□□□ -0.43
VPS53-206ENST00000570359 FOXD4L1Q9NU39 408 aa12.38□□□□□ -0.43
VPS53-206ENST00000570359 RGS12O14924 1447 aa12.38□□□□□ -0.43
VPS53-206ENST00000570359 RGPD2P0DJD1 1756 aa12.38□□□□□ -0.43
VPS53-206ENST00000570359 MARF1Q9Y4F3 1742 aaKnown RBP12.38□□□□□ -0.43
VPS53-206ENST00000570359 KCNH5Q8NCM2 988 aa12.38□□□□□ -0.43
VPS53-206ENST00000570359 ADAMTSL3P82987 1691 aa12.37□□□□□ -0.43
VPS53-206ENST00000570359 CCDC30Q5VVM6 783 aa12.37□□□□□ -0.43
VPS53-206ENST00000570359 TBC1D2Q9BYX2 928 aa12.37□□□□□ -0.43
VPS53-206ENST00000570359 KIAA0232Q92628 1395 aa12.37□□□□□ -0.43
VPS53-206ENST00000570359 C1orf141Q5JVX7 400 aa12.37□□□□□ -0.43
VPS53-206ENST00000570359 PTPRCP08575 1304 aa12.37□□□□□ -0.43
VPS53-206ENST00000570359 PRAMEF22A3QJZ6 481 aa12.36□□□□□ -0.43
VPS53-206ENST00000570359 BTBD11A6QL63 1104 aa12.36□□□□□ -0.43
VPS53-206ENST00000570359 RTL1A6NKG5 1358 aa12.36□□□□□ -0.43
VPS53-206ENST00000570359 CHPF2Q9P2E5 772 aa12.36□□□□□ -0.43
VPS53-206ENST00000570359 TMEM94Q12767 1356 aa12.36□□□□□ -0.43
VPS53-206ENST00000570359 NWD1Q149M9 1564 aa12.35□□□□□ -0.43
VPS53-206ENST00000570359 TBC1D9Q6ZT07 1266 aa12.35□□□□□ -0.43
VPS53-206ENST00000570359 ANKRD44Q8N8A2 993 aa12.35□□□□□ -0.43
VPS53-206ENST00000570359 GSPT1P15170 499 aaKnown RBP12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms