RNA–Protein interactions for RNA: ENST00000569336.2

CLN6-209, Transcript of CLN6, transmembrane ER protein, humanhuman

Gene CLN6, Length 557 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-209ENST00000569336 PLEKHG2Q9H7P9 1386 aa13.37□□□□□ -0.27
CLN6-209ENST00000569336 POLKQ9UBT6 870 aa13.37□□□□□ -0.27
CLN6-209ENST00000569336 SCN11AQ9UI33 1791 aa13.37□□□□□ -0.27
CLN6-209ENST00000569336 TAF1LQ8IZX4 1826 aa13.36□□□□□ -0.27
CLN6-209ENST00000569336 RAPGEF4Q8WZA2 1011 aa13.36□□□□□ -0.27
CLN6-209ENST00000569336 QSER1Q2KHR3 1735 aa13.36□□□□□ -0.27
CLN6-209ENST00000569336 LRP5O75197 1615 aa13.35□□□□□ -0.27
CLN6-209ENST00000569336 PER1O15534 1290 aaPredicted RBP13.35□□□□□ -0.27
CLN6-209ENST00000569336 TRIM37O94972 964 aa13.35□□□□□ -0.27
CLN6-209ENST00000569336 NBPF6Q5VWK0 638 aa13.34□□□□□ -0.27
CLN6-209ENST00000569336 MARCH10Q8NA82 808 aaPredicted RBP13.34□□□□□ -0.27
CLN6-209ENST00000569336 NBPF4Q96M43 638 aa13.34□□□□□ -0.27
CLN6-209ENST00000569336 TATP17735 454 aaPredicted RBP13.33□□□□□ -0.28
CLN6-209ENST00000569336 TUBGCP6Q96RT7 1819 aa13.33□□□□□ -0.28
CLN6-209ENST00000569336 C5P01031 1676 aa13.32□□□□□ -0.28
CLN6-209ENST00000569336 CC2D1BQ5T0F9 858 aaKnown RBP13.32□□□□□ -0.28
CLN6-209ENST00000569336 USHBP1Q8N6Y0 703 aa13.32□□□□□ -0.28
CLN6-209ENST00000569336 PCDH11XQ9BZA7 1347 aa13.32□□□□□ -0.28
CLN6-209ENST00000569336 PCDH11YQ9BZA8 1340 aa13.32□□□□□ -0.28
CLN6-209ENST00000569336 APBA3O96018 575 aa13.31□□□□□ -0.28
CLN6-209ENST00000569336 IFFO2Q5TF58 517 aa13.31□□□□□ -0.28
CLN6-209ENST00000569336 ZCRB1Q8TBF4 217 aaKnown RBP13.31□□□□□ -0.28
CLN6-209ENST00000569336 BCL11BQ9C0K0 894 aaPredicted RBP13.31□□□□□ -0.28
CLN6-209ENST00000569336 IGSF1Q8N6C5 1336 aa13.31□□□□□ -0.28
CLN6-209ENST00000569336 DLG5Q8TDM6 1919 aa13.31□□□□□ -0.28
CLN6-209ENST00000569336 EIF4A2Q14240 407 aaKnown RBP13.3□□□□□ -0.28
CLN6-209ENST00000569336 COL3A1P02461 1466 aaPredicted RBP13.29□□□□□ -0.28
CLN6-209ENST00000569336 PAPPAQ13219 1627 aa13.29□□□□□ -0.28
CLN6-209ENST00000569336 EN1Q05925 392 aaPredicted RBP13.29□□□□□ -0.28
CLN6-209ENST00000569336 DCAF8L1A6NGE4 600 aa13.28□□□□□ -0.28
CLN6-209ENST00000569336 DDX54Q8TDD1 881 aaKnown RBP13.28□□□□□ -0.28
CLN6-209ENST00000569336 EYA1Q99502 592 aa13.28□□□□□ -0.28
CLN6-209ENST00000569336 ZNF831Q5JPB2 1677 aa13.28□□□□□ -0.28
CLN6-209ENST00000569336 CASZ1Q86V15 1759 aa13.27□□□□□ -0.28
CLN6-209ENST00000569336 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.27□□□□□ -0.29
CLN6-209ENST00000569336 SPG7Q9UQ90 795 aa13.27□□□□□ -0.29
CLN6-209ENST00000569336 KDRP35968 1356 aa13.27□□□□□ -0.29
CLN6-209ENST00000569336 PLSCR1O15162 318 aa13.26□□□□□ -0.29
CLN6-209ENST00000569336 SIPA1L3O60292 1781 aaPredicted RBP13.26□□□□□ -0.29
CLN6-209ENST00000569336 MTHFSP49914 203 aa13.26□□□□□ -0.29
CLN6-209ENST00000569336 R3HDM1Q15032 1099 aaKnown RBP13.26□□□□□ -0.29
CLN6-209ENST00000569336 CAMKK2Q96RR4 588 aa13.26□□□□□ -0.29
CLN6-209ENST00000569336 ADAMTS7Q9UKP4 1686 aa13.26□□□□□ -0.29
CLN6-209ENST00000569336 EZH2Q15910 746 aaKnown RBP13.25□□□□□ -0.29
CLN6-209ENST00000569336 COL5A3P25940 1745 aaPredicted RBP13.25□□□□□ -0.29
CLN6-209ENST00000569336 SENP3-EIF4A1A0A087X0R7 540 aa13.24□□□□□ -0.29
CLN6-209ENST00000569336 CNGB1Q14028 1251 aaPredicted RBP13.24□□□□□ -0.29
CLN6-209ENST00000569336 ACSBG1Q96GR2 724 aa13.24□□□□□ -0.29
CLN6-209ENST00000569336 CFAP53Q96M91 514 aa13.24□□□□□ -0.29
CLN6-209ENST00000569336 UBR3Q6ZT12 1888 aa13.24□□□□□ -0.29
CLN6-209ENST00000569336 DIAPH1O60610 1272 aaKnown RBP13.23□□□□□ -0.29
CLN6-209ENST00000569336 CICQ96RK0 1608 aaPredicted RBP13.22□□□□□ -0.29
CLN6-209ENST00000569336 KCNQ2O43526 872 aa13.22□□□□□ -0.29
CLN6-209ENST00000569336 IL13P35225 146 aa13.22□□□□□ -0.29
CLN6-209ENST00000569336 SYTL4Q96C24 671 aaPredicted RBP13.22□□□□□ -0.29
CLN6-209ENST00000569336 UBR2Q8IWV8 1755 aa13.22□□□□□ -0.29
CLN6-209ENST00000569336 CYP27B1O15528 508 aa13.21□□□□□ -0.29
CLN6-209ENST00000569336 AMOTQ4VCS5 1084 aa13.21□□□□□ -0.29
CLN6-209ENST00000569336 NBPF14Q5TI25 921 aa13.21□□□□□ -0.29
CLN6-209ENST00000569336 SULT6B1Q6IMI4 303 aa13.21□□□□□ -0.29
CLN6-209ENST00000569336 IFNL2Q8IZJ0 200 aa13.21□□□□□ -0.29
CLN6-209ENST00000569336 C4BP0C0L5 1744 aa13.2□□□□□ -0.3
CLN6-209ENST00000569336 COL24A1Q17RW2 1714 aa13.2□□□□□ -0.3
CLN6-209ENST00000569336 PLEKHO1Q53GL0 409 aaPredicted RBP13.2□□□□□ -0.3
CLN6-209ENST00000569336 PTF1AQ7RTS3 328 aa13.2□□□□□ -0.3
CLN6-209ENST00000569336 HSP90AB1P08238 724 aaKnown RBP13.19□□□□□ -0.3
CLN6-209ENST00000569336 PPP2R1AP30153 589 aa13.19□□□□□ -0.3
CLN6-209ENST00000569336 PRIM1P49642 420 aaKnown RBP13.19□□□□□ -0.3
CLN6-209ENST00000569336 NKX1-1Q15270 411 aaPredicted RBP13.19□□□□□ -0.3
CLN6-209ENST00000569336 C1orf141Q5JVX7 400 aa13.19□□□□□ -0.3
CLN6-209ENST00000569336 AEBP1Q8IUX7 1158 aa13.19□□□□□ -0.3
CLN6-209ENST00000569336 MRC1P22897 1456 aa13.18□□□□□ -0.3
CLN6-209ENST00000569336 PHKG2P15735 406 aa13.18□□□□□ -0.3
CLN6-209ENST00000569336 TXNRD1Q16881 649 aa13.18□□□□□ -0.3
CLN6-209ENST00000569336 ZNF530Q6P9A1 599 aaPredicted RBP13.18□□□□□ -0.3
CLN6-209ENST00000569336 PPP1R1BQ9UD71 204 aaPredicted RBP13.18□□□□□ -0.3
CLN6-209ENST00000569336 TJP1Q07157 1748 aa13.17□□□□□ -0.3
CLN6-209ENST00000569336 HMGB2P26583 209 aaKnown RBP13.17□□□□□ -0.3
CLN6-209ENST00000569336 DDX10Q13206 875 aaKnown RBP13.17□□□□□ -0.3
CLN6-209ENST00000569336 SLC27A3Q5K4L6 730 aa13.17□□□□□ -0.3
CLN6-209ENST00000569336 NUDCQ9Y266 331 aa13.17□□□□□ -0.3
CLN6-209ENST00000569336 KDM6AO15550 1401 aaPredicted RBP13.16□□□□□ -0.3
CLN6-209ENST00000569336 U2SURPO15042 1029 aaKnown RBP13.16□□□□□ -0.3
CLN6-209ENST00000569336 RALBP1Q15311 655 aa13.16□□□□□ -0.3
CLN6-209ENST00000569336 DCAF5Q96JK2 942 aa13.16□□□□□ -0.3
CLN6-209ENST00000569336 MYH14Q7Z406 1995 aaKnown RBP13.16□□□□□ -0.3
CLN6-209ENST00000569336 HMOX1P09601 288 aa13.15□□□□□ -0.3
CLN6-209ENST00000569336 MPRIPQ6WCQ1 1025 aa13.15□□□□□ -0.3
CLN6-209ENST00000569336 SMARCC1Q92922 1105 aaPredicted RBP13.15□□□□□ -0.3
CLN6-209ENST00000569336 TMOD3Q9NYL9 352 aa13.15□□□□□ -0.3
CLN6-209ENST00000569336 C4AP0C0L4 1744 aa13.15□□□□□ -0.3
CLN6-209ENST00000569336 PALLDQ8WX93 1383 aa13.15□□□□□ -0.3
CLN6-209ENST00000569336 STK32BQ9NY57 414 aa13.14□□□□□ -0.31
CLN6-209ENST00000569336 LAMB4A4D0S4 1761 aa13.13□□□□□ -0.31
CLN6-209ENST00000569336 ERVV-2B6SEH9 535 aa13.13□□□□□ -0.31
CLN6-209ENST00000569336 AKAP4Q5JQC9 854 aa13.13□□□□□ -0.31
CLN6-209ENST00000569336 PROM2Q8N271 834 aa13.13□□□□□ -0.31
CLN6-209ENST00000569336 ANO8Q9HCE9 1232 aaPredicted RBP13.12□□□□□ -0.31
CLN6-209ENST00000569336 CCNL1Q9UK58 526 aaPredicted RBP13.12□□□□□ -0.31
CLN6-209ENST00000569336 KDM3BQ7LBC6 1761 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms