RNA–Protein interactions for RNA: ENST00000569080.1

CDH3-209, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 291 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-209ENST00000569080 PROM2Q8N271 834 aa10.85□□□□□ -0.67
CDH3-209ENST00000569080 NSD2O96028 1365 aa10.85□□□□□ -0.67
CDH3-209ENST00000569080 LY75O60449 1722 aa10.84□□□□□ -0.67
CDH3-209ENST00000569080 USHBP1Q8N6Y0 703 aa10.83□□□□□ -0.68
CDH3-209ENST00000569080 KIF7Q2M1P5 1343 aa10.83□□□□□ -0.68
CDH3-209ENST00000569080 ACSBG1Q96GR2 724 aa10.82□□□□□ -0.68
CDH3-209ENST00000569080 POLR3GLQ9BT43 218 aa10.82□□□□□ -0.68
CDH3-209ENST00000569080 PANK3Q9H999 370 aa10.82□□□□□ -0.68
CDH3-209ENST00000569080 POLKQ9UBT6 870 aa10.82□□□□□ -0.68
CDH3-209ENST00000569080 WASHC2AQ641Q2 1341 aa10.82□□□□□ -0.68
CDH3-209ENST00000569080 TXNRD1Q16881 649 aa10.81□□□□□ -0.68
CDH3-209ENST00000569080 TUBGCP6Q96RT7 1819 aa10.81□□□□□ -0.68
CDH3-209ENST00000569080 QSER1Q2KHR3 1735 aa10.81□□□□□ -0.68
CDH3-209ENST00000569080 ZCRB1Q8TBF4 217 aaKnown RBP10.8□□□□□ -0.68
CDH3-209ENST00000569080 NBPF14Q5TI25 921 aa10.79□□□□□ -0.68
CDH3-209ENST00000569080 DDX54Q8TDD1 881 aaKnown RBP10.79□□□□□ -0.68
CDH3-209ENST00000569080 ITGB4P16144 1822 aa10.79□□□□□ -0.68
CDH3-209ENST00000569080 PLEKHG2Q9H7P9 1386 aa10.78□□□□□ -0.68
CDH3-209ENST00000569080 AMER1Q5JTC6 1135 aaPredicted RBP10.78□□□□□ -0.68
CDH3-209ENST00000569080 RAPGEF4Q8WZA2 1011 aa10.78□□□□□ -0.68
CDH3-209ENST00000569080 PDGFDQ9GZP0 370 aaPredicted RBP10.78□□□□□ -0.68
CDH3-209ENST00000569080 LRRC4BQ9NT99 713 aa10.78□□□□□ -0.68
CDH3-209ENST00000569080 PCDH11XQ9BZA7 1347 aa10.78□□□□□ -0.68
CDH3-209ENST00000569080 PCDH11YQ9BZA8 1340 aa10.78□□□□□ -0.68
CDH3-209ENST00000569080 COL24A1Q17RW2 1714 aa10.78□□□□□ -0.68
CDH3-209ENST00000569080 KAT6BQ8WYB5 2073 aa10.77□□□□□ -0.69
CDH3-209ENST00000569080 PPM1GO15355 546 aaPredicted RBP10.77□□□□□ -0.69
CDH3-209ENST00000569080 CYP27B1O15528 508 aa10.77□□□□□ -0.69
CDH3-209ENST00000569080 TATP17735 454 aaPredicted RBP10.77□□□□□ -0.69
CDH3-209ENST00000569080 EIF4A2Q14240 407 aaKnown RBP10.77□□□□□ -0.69
CDH3-209ENST00000569080 EYA1Q99502 592 aa10.77□□□□□ -0.69
CDH3-209ENST00000569080 IGSF1Q8N6C5 1336 aa10.77□□□□□ -0.69
CDH3-209ENST00000569080 C5P01031 1676 aa10.76□□□□□ -0.69
CDH3-209ENST00000569080 TNNT2P45379 298 aaPredicted RBP10.76□□□□□ -0.69
CDH3-209ENST00000569080 PRIM1P49642 420 aaKnown RBP10.76□□□□□ -0.69
CDH3-209ENST00000569080 ZNF827Q17R98 1081 aa10.76□□□□□ -0.69
CDH3-209ENST00000569080 TAF1LQ8IZX4 1826 aa10.76□□□□□ -0.69
CDH3-209ENST00000569080 PER1O15534 1290 aaPredicted RBP10.75□□□□□ -0.69
CDH3-209ENST00000569080 SLC15A2Q16348 729 aa10.75□□□□□ -0.69
CDH3-209ENST00000569080 AKT1S1Q96B36 256 aa10.74□□□□□ -0.69
CDH3-209ENST00000569080 KDRP35968 1356 aa10.74□□□□□ -0.69
CDH3-209ENST00000569080 COL3A1P02461 1466 aaPredicted RBP10.74□□□□□ -0.69
CDH3-209ENST00000569080 NKX1-1Q15270 411 aaPredicted RBP10.73□□□□□ -0.69
CDH3-209ENST00000569080 SLC27A3Q5K4L6 730 aa10.73□□□□□ -0.69
CDH3-209ENST00000569080 SYTL4Q96C24 671 aaPredicted RBP10.73□□□□□ -0.69
CDH3-209ENST00000569080 SPON1Q9HCB6 807 aa10.73□□□□□ -0.69
CDH3-209ENST00000569080 STK32BQ9NY57 414 aa10.73□□□□□ -0.69
CDH3-209ENST00000569080 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.73□□□□□ -0.69
CDH3-209ENST00000569080 KNSTRNQ9Y448 316 aa10.73□□□□□ -0.69
CDH3-209ENST00000569080 NPC1L1Q9UHC9 1359 aa10.73□□□□□ -0.69
CDH3-209ENST00000569080 PTGER2P43116 358 aa10.72□□□□□ -0.69
CDH3-209ENST00000569080 MORC1Q86VD1 984 aa10.72□□□□□ -0.69
CDH3-209ENST00000569080 SGIP1Q9BQI5 828 aa10.72□□□□□ -0.69
CDH3-209ENST00000569080 UTRNP46939 3433 aa10.72□□□□□ -0.69
CDH3-209ENST00000569080 KDM6AO15550 1401 aaPredicted RBP10.71□□□□□ -0.69
CDH3-209ENST00000569080 ZBTB7AO95365 584 aa10.71□□□□□ -0.69
CDH3-209ENST00000569080 C4BP0C0L5 1744 aa10.71□□□□□ -0.69
CDH3-209ENST00000569080 KCNQ4P56696 695 aa10.71□□□□□ -0.69
CDH3-209ENST00000569080 PALLDQ8WX93 1383 aa10.71□□□□□ -0.69
CDH3-209ENST00000569080 ZNF831Q5JPB2 1677 aa10.7□□□□□ -0.7
CDH3-209ENST00000569080 PNPLA7Q6ZV29 1317 aa10.7□□□□□ -0.7
CDH3-209ENST00000569080 PHKG2P15735 406 aa10.7□□□□□ -0.7
CDH3-209ENST00000569080 IL13P35225 146 aa10.7□□□□□ -0.7
CDH3-209ENST00000569080 AEBP1Q8IUX7 1158 aa10.7□□□□□ -0.7
CDH3-209ENST00000569080 SPG7Q9UQ90 795 aa10.7□□□□□ -0.7
CDH3-209ENST00000569080 GOLGB1Q14789 3259 aaKnown RBP10.7□□□□□ -0.7
CDH3-209ENST00000569080 UBR3Q6ZT12 1888 aa10.7□□□□□ -0.7
CDH3-209ENST00000569080 ADAMTS7Q9UKP4 1686 aa10.69□□□□□ -0.7
CDH3-209ENST00000569080 MTFR1LQ9H019 292 aa10.69□□□□□ -0.7
CDH3-209ENST00000569080 CCNL1Q9UK58 526 aaPredicted RBP10.69□□□□□ -0.7
CDH3-209ENST00000569080 CICQ96RK0 1608 aaPredicted RBP10.69□□□□□ -0.7
CDH3-209ENST00000569080 SCN11AQ9UI33 1791 aa10.68□□□□□ -0.7
CDH3-209ENST00000569080 COL5A3P25940 1745 aaPredicted RBP10.68□□□□□ -0.7
CDH3-209ENST00000569080 PIGBQ92521 554 aa10.68□□□□□ -0.7
CDH3-209ENST00000569080 MRC1P22897 1456 aa10.68□□□□□ -0.7
CDH3-209ENST00000569080 MTHFSP49914 203 aa10.67□□□□□ -0.7
CDH3-209ENST00000569080 MPRIPQ6WCQ1 1025 aa10.67□□□□□ -0.7
CDH3-209ENST00000569080 IFNL2Q8IZJ0 200 aa10.67□□□□□ -0.7
CDH3-209ENST00000569080 ATF5Q9Y2D1 282 aaPredicted RBP10.67□□□□□ -0.7
CDH3-209ENST00000569080 VIRMAQ69YN4 1812 aaKnown RBP10.67□□□□□ -0.7
CDH3-209ENST00000569080 MAP3K5Q99683 1374 aa10.66□□□□□ -0.7
CDH3-209ENST00000569080 CC2D1BQ5T0F9 858 aaKnown RBP10.66□□□□□ -0.7
CDH3-209ENST00000569080 TJP1Q07157 1748 aa10.65□□□□□ -0.7
CDH3-209ENST00000569080 SULT6B1Q6IMI4 303 aa10.65□□□□□ -0.7
CDH3-209ENST00000569080 AMIGO3Q86WK7 504 aa10.65□□□□□ -0.7
CDH3-209ENST00000569080 AMOTQ4VCS5 1084 aa10.64□□□□□ -0.71
CDH3-209ENST00000569080 ZNF530Q6P9A1 599 aaPredicted RBP10.64□□□□□ -0.71
CDH3-209ENST00000569080 SLC16A10Q8TF71 515 aa10.64□□□□□ -0.71
CDH3-209ENST00000569080 SMARCC1Q92922 1105 aaPredicted RBP10.64□□□□□ -0.71
CDH3-209ENST00000569080 TMOD3Q9NYL9 352 aa10.64□□□□□ -0.71
CDH3-209ENST00000569080 PPP1R1BQ9UD71 204 aaPredicted RBP10.64□□□□□ -0.71
CDH3-209ENST00000569080 ASAP1Q9ULH1 1129 aa10.64□□□□□ -0.71
CDH3-209ENST00000569080 LOC102724428A0A0B4J2F2 783 aa10.63□□□□□ -0.71
CDH3-209ENST00000569080 SIK1P57059 783 aa10.63□□□□□ -0.71
CDH3-209ENST00000569080 ITPK1Q13572 414 aa10.63□□□□□ -0.71
CDH3-209ENST00000569080 PLEKHO1Q53GL0 409 aaPredicted RBP10.63□□□□□ -0.71
CDH3-209ENST00000569080 COL23A1Q86Y22 540 aaPredicted RBP10.63□□□□□ -0.71
CDH3-209ENST00000569080 DCAF5Q96JK2 942 aa10.63□□□□□ -0.71
CDH3-209ENST00000569080 FHDC1Q9C0D6 1143 aaPredicted RBP10.63□□□□□ -0.71
CDH3-209ENST00000569080 ATG3Q9NT62 314 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms