RNA–Protein interactions for RNA: ENST00000568782.1

UBR1-207, Transcript of ubiquitin protein ligase E3 component n-recognin 1, human

TSL 3

Gene UBR1, Length 615 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR1-207	ENST00000568782	SYTL4	Q96C24	671 aa	Predicted RBP	14.14	□□□□□ -0.15
UBR1-207	ENST00000568782	NHS	Q6T4R5	1651 aa		14.13	□□□□□ -0.15
UBR1-207	ENST00000568782	KIF7	Q2M1P5	1343 aa		14.13	□□□□□ -0.15
UBR1-207	ENST00000568782	POLK	Q9UBT6	870 aa		14.12	□□□□□ -0.15
UBR1-207	ENST00000568782	NUP188	Q5SRE5	1749 aa		14.12	□□□□□ -0.15
UBR1-207	ENST00000568782	KCNQ2	O43526	872 aa		14.11	□□□□□ -0.15
UBR1-207	ENST00000568782	HMGB2	P26583	209 aa	Known RBP	14.11	□□□□□ -0.15
UBR1-207	ENST00000568782	SPG7	Q9UQ90	795 aa		14.11	□□□□□ -0.15
UBR1-207	ENST00000568782	PCDH11X	Q9BZA7	1347 aa		14.11	□□□□□ -0.15
UBR1-207	ENST00000568782	PCDH11Y	Q9BZA8	1340 aa		14.11	□□□□□ -0.15
UBR1-207	ENST00000568782	TXNRD1	Q16881	649 aa		14.1	□□□□□ -0.15
UBR1-207	ENST00000568782	STK32B	Q9NY57	414 aa		14.1	□□□□□ -0.15
UBR1-207	ENST00000568782	BTAF1	O14981	1849 aa		14.1	□□□□□ -0.15
UBR1-207	ENST00000568782	PTF1A	Q7RTS3	328 aa		14.09	□□□□□ -0.15
UBR1-207	ENST00000568782	MEGF6	O75095	1541 aa		14.09	□□□□□ -0.15
UBR1-207	ENST00000568782	PRIM1	P49642	420 aa	Known RBP	14.07	□□□□□ -0.16
UBR1-207	ENST00000568782	EYA1	Q99502	592 aa		14.07	□□□□□ -0.16
UBR1-207	ENST00000568782	DOT1L	Q8TEK3	1739 aa		14.07	□□□□□ -0.16
UBR1-207	ENST00000568782	LRP5	O75197	1615 aa		14.06	□□□□□ -0.16
UBR1-207	ENST00000568782	EIF4A2	Q14240	407 aa	Known RBP	14.06	□□□□□ -0.16
UBR1-207	ENST00000568782	SLC27A3	Q5K4L6	730 aa		14.06	□□□□□ -0.16
UBR1-207	ENST00000568782	PPP1R1B	Q9UD71	204 aa	Predicted RBP	14.06	□□□□□ -0.16
UBR1-207	ENST00000568782	SHANK3	Q9BYB0	1731 aa		14.05	□□□□□ -0.16
UBR1-207	ENST00000568782	CC2D1B	Q5T0F9	858 aa	Known RBP	14.05	□□□□□ -0.16
UBR1-207	ENST00000568782	SPON1	Q9HCB6	807 aa		14.05	□□□□□ -0.16
UBR1-207	ENST00000568782	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	14.05	□□□□□ -0.16	1e-7	■■■■■ 34.2
UBR1-207	ENST00000568782	CNGB1	Q14028	1251 aa	Predicted RBP	14.04	□□□□□ -0.16
UBR1-207	ENST00000568782	AMER1	Q5JTC6	1135 aa	Predicted RBP	14.04	□□□□□ -0.16
UBR1-207	ENST00000568782	IFNL2	Q8IZJ0	200 aa		14.04	□□□□□ -0.16
UBR1-207	ENST00000568782	PROM2	Q8N271	834 aa		14.04	□□□□□ -0.16
UBR1-207	ENST00000568782	SLC15A2	Q16348	729 aa		14.03	□□□□□ -0.16
UBR1-207	ENST00000568782	PLEKHO1	Q53GL0	409 aa	Predicted RBP	14.03	□□□□□ -0.16
UBR1-207	ENST00000568782	PKD1L3	Q7Z443	1732 aa		14.02	□□□□□ -0.16
UBR1-207	ENST00000568782	HSP90AB1	P08238	724 aa	Known RBP	14.02	□□□□□ -0.17
UBR1-207	ENST00000568782	AMOT	Q4VCS5	1084 aa		14.02	□□□□□ -0.17
UBR1-207	ENST00000568782	MPRIP	Q6WCQ1	1025 aa		14.02	□□□□□ -0.17
UBR1-207	ENST00000568782	SMARCC1	Q92922	1105 aa	Predicted RBP	14.02	□□□□□ -0.17
UBR1-207	ENST00000568782	PLEKHG2	Q9H7P9	1386 aa		14.01	□□□□□ -0.17
UBR1-207	ENST00000568782	DCAF8L1	A6NGE4	600 aa		14.01	□□□□□ -0.17
UBR1-207	ENST00000568782	CYP27B1	O15528	508 aa		14.01	□□□□□ -0.17
UBR1-207	ENST00000568782	PER1	O15534	1290 aa	Predicted RBP	14.01	□□□□□ -0.17
UBR1-207	ENST00000568782	MTHFS	P49914	203 aa		14.01	□□□□□ -0.17
UBR1-207	ENST00000568782	ITGB4	P16144	1822 aa		14.01	□□□□□ -0.17
UBR1-207	ENST00000568782	NCAPD2	Q15021	1401 aa		14	□□□□□ -0.17
UBR1-207	ENST00000568782	IGSF1	Q8N6C5	1336 aa		14	□□□□□ -0.17
UBR1-207	ENST00000568782	C1orf141	Q5JVX7	400 aa		14	□□□□□ -0.17
UBR1-207	ENST00000568782	ANO8	Q9HCE9	1232 aa	Predicted RBP	14	□□□□□ -0.17
UBR1-207	ENST00000568782	CCNL1	Q9UK58	526 aa	Predicted RBP	14	□□□□□ -0.17
UBR1-207	ENST00000568782	NKX1-1	Q15270	411 aa	Predicted RBP	13.99	□□□□□ -0.17
UBR1-207	ENST00000568782	TMOD3	Q9NYL9	352 aa		13.99	□□□□□ -0.17
UBR1-207	ENST00000568782	TFCP2L1	Q9NZI6	479 aa		13.99	□□□□□ -0.17
UBR1-207	ENST00000568782	LY75	O60449	1722 aa		13.98	□□□□□ -0.17
UBR1-207	ENST00000568782	NPC1L1	Q9UHC9	1359 aa		13.98	□□□□□ -0.17
UBR1-207	ENST00000568782	DIAPH1	O60610	1272 aa	Known RBP	13.98	□□□□□ -0.17
UBR1-207	ENST00000568782	PHKG2	P15735	406 aa		13.98	□□□□□ -0.17
UBR1-207	ENST00000568782	SULT6B1	Q6IMI4	303 aa		13.98	□□□□□ -0.17
UBR1-207	ENST00000568782	CFAP53	Q96M91	514 aa		13.98	□□□□□ -0.17
UBR1-207	ENST00000568782	ZNF530	Q6P9A1	599 aa	Predicted RBP	13.97	□□□□□ -0.17
UBR1-207	ENST00000568782	SRCAP	Q6ZRS2	3230 aa		13.97	□□□□□ -0.17
UBR1-207	ENST00000568782	ZBTB7A	O95365	584 aa		13.96	□□□□□ -0.17
UBR1-207	ENST00000568782	DCAF5	Q96JK2	942 aa		13.96	□□□□□ -0.17
UBR1-207	ENST00000568782	MTFR1L	Q9H019	292 aa		13.96	□□□□□ -0.17
UBR1-207	ENST00000568782	LRRC4B	Q9NT99	713 aa		13.96	□□□□□ -0.17
UBR1-207	ENST00000568782	MSH5	O43196	834 aa		13.95	□□□□□ -0.18
UBR1-207	ENST00000568782	IL13	P35225	146 aa		13.95	□□□□□ -0.18
UBR1-207	ENST00000568782	SLC16A10	Q8TF71	515 aa		13.95	□□□□□ -0.18
UBR1-207	ENST00000568782	ATF5	Q9Y2D1	282 aa	Predicted RBP	13.95	□□□□□ -0.18
UBR1-207	ENST00000568782	PALLD	Q8WX93	1383 aa		13.95	□□□□□ -0.18
UBR1-207	ENST00000568782	CASZ1	Q86V15	1759 aa		13.94	□□□□□ -0.18
UBR1-207	ENST00000568782	ERVV-2	B6SEH9	535 aa		13.94	□□□□□ -0.18
UBR1-207	ENST00000568782	CABP4	P57796	275 aa		13.94	□□□□□ -0.18
UBR1-207	ENST00000568782	FLAD1	Q8NFF5	587 aa		13.94	□□□□□ -0.18
UBR1-207	ENST00000568782	PIGB	Q92521	554 aa		13.94	□□□□□ -0.18
UBR1-207	ENST00000568782	NUDC	Q9Y266	331 aa		13.94	□□□□□ -0.18
UBR1-207	ENST00000568782	QSER1	Q2KHR3	1735 aa		13.93	□□□□□ -0.18
UBR1-207	ENST00000568782	U2SURP	O15042	1029 aa	Known RBP	13.93	□□□□□ -0.18
UBR1-207	ENST00000568782	POLD1	P28340	1107 aa		13.93	□□□□□ -0.18
UBR1-207	ENST00000568782	KCNQ4	P56696	695 aa		13.93	□□□□□ -0.18
UBR1-207	ENST00000568782	AEBP1	Q8IUX7	1158 aa		13.93	□□□□□ -0.18
UBR1-207	ENST00000568782	TOGARAM1	Q9Y4F4	1720 aa		13.93	□□□□□ -0.18
UBR1-207	ENST00000568782	HMOX1	P09601	288 aa		13.92	□□□□□ -0.18
UBR1-207	ENST00000568782	ZNF827	Q17R98	1081 aa		13.92	□□□□□ -0.18
UBR1-207	ENST00000568782	AKT1S1	Q96B36	256 aa		13.92	□□□□□ -0.18
UBR1-207	ENST00000568782	AK7	Q96M32	723 aa		13.92	□□□□□ -0.18
UBR1-207	ENST00000568782	PAPPA	Q13219	1627 aa		13.92	□□□□□ -0.18
UBR1-207	ENST00000568782	C5	P01031	1676 aa		13.91	□□□□□ -0.18
UBR1-207	ENST00000568782	PDGFD	Q9GZP0	370 aa	Predicted RBP	13.91	□□□□□ -0.18
UBR1-207	ENST00000568782	TAF1L	Q8IZX4	1826 aa		13.91	□□□□□ -0.18
UBR1-207	ENST00000568782	KDR	P35968	1356 aa		13.91	□□□□□ -0.18
UBR1-207	ENST00000568782	LOC102724428	A0A0B4J2F2	783 aa		13.9	□□□□□ -0.18
UBR1-207	ENST00000568782	ATP6V1A	P38606	617 aa		13.9	□□□□□ -0.18
UBR1-207	ENST00000568782	SIK1	P57059	783 aa		13.9	□□□□□ -0.18
UBR1-207	ENST00000568782	AKAP4	Q5JQC9	854 aa		13.9	□□□□□ -0.18
UBR1-207	ENST00000568782	NEFM	P07197	916 aa		13.89	□□□□□ -0.19
UBR1-207	ENST00000568782	RBM42	Q9BTD8	480 aa	Known RBP	13.89	□□□□□ -0.19
UBR1-207	ENST00000568782	ASAP1	Q9ULH1	1129 aa		13.89	□□□□□ -0.19
UBR1-207	ENST00000568782	VIRMA	Q69YN4	1812 aa	Known RBP	13.88	□□□□□ -0.19
UBR1-207	ENST00000568782	ARX	Q96QS3	562 aa		13.88	□□□□□ -0.19
UBR1-207	ENST00000568782	PNPLA7	Q6ZV29	1317 aa		13.88	□□□□□ -0.19
UBR1-207	ENST00000568782	TUBGCP6	Q96RT7	1819 aa		13.87	□□□□□ -0.19

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