RNA–Protein interactions for RNA: ENST00000568691.5

VPS9D1-207, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 838 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-207ENST00000568691 USP31Q70CQ4 1352 aa17.14■□□□□ 0.33
VPS9D1-207ENST00000568691 ANKRD36BQ8N2N9 1353 aa17.14■□□□□ 0.33
VPS9D1-207ENST00000568691 CCNL1Q9UK58 526 aaPredicted RBP17.12■□□□□ 0.33
VPS9D1-207ENST00000568691 CLSPNQ9HAW4 1339 aa17.12■□□□□ 0.33
VPS9D1-207ENST00000568691 USP54Q70EL1 1684 aa17.11■□□□□ 0.33
VPS9D1-207ENST00000568691 DOT1LQ8TEK3 1739 aa17.11■□□□□ 0.33
VPS9D1-207ENST00000568691 MSH5O43196 834 aa17.11■□□□□ 0.33
VPS9D1-207ENST00000568691 CAPN15O75808 1086 aa17.1■□□□□ 0.33
VPS9D1-207ENST00000568691 HTRA3P83110 453 aa17.1■□□□□ 0.33
VPS9D1-207ENST00000568691 NME9Q86XW9 330 aa17.1■□□□□ 0.33
VPS9D1-207ENST00000568691 SYTL4Q96C24 671 aaPredicted RBP17.1■□□□□ 0.33
VPS9D1-207ENST00000568691 IGSF1Q8N6C5 1336 aa17.1■□□□□ 0.33
VPS9D1-207ENST00000568691 SMIM5Q71RC9 77 aa17.09■□□□□ 0.33
VPS9D1-207ENST00000568691 KTN1Q86UP2 1357 aaKnown RBP17.09■□□□□ 0.33
VPS9D1-207ENST00000568691 PCNTO95613 3336 aa17.09■□□□□ 0.33
VPS9D1-207ENST00000568691 CICQ96RK0 1608 aaPredicted RBP17.08■□□□□ 0.32
VPS9D1-207ENST00000568691 CD163L1Q9NR16 1453 aa17.08■□□□□ 0.32
VPS9D1-207ENST00000568691 SBNO2Q9Y2G9 1366 aa17.08■□□□□ 0.32
VPS9D1-207ENST00000568691 EVC2Q86UK5 1308 aa17.08■□□□□ 0.32
VPS9D1-207ENST00000568691 LTN1O94822 1766 aa17.07■□□□□ 0.32
VPS9D1-207ENST00000568691 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.07■□□□□ 0.32
VPS9D1-207ENST00000568691 JMYQ8N9B5 988 aa17.07■□□□□ 0.32
VPS9D1-207ENST00000568691 CCER1Q8TC90 406 aaPredicted RBP17.07■□□□□ 0.32
VPS9D1-207ENST00000568691 MON2Q7Z3U7 1717 aa17.07■□□□□ 0.32
VPS9D1-207ENST00000568691 TOMM70O94826 608 aa17.06■□□□□ 0.32
VPS9D1-207ENST00000568691 TOGARAM1Q9Y4F4 1720 aa17.06■□□□□ 0.32
VPS9D1-207ENST00000568691 FAM208AQ9UK61 1670 aaKnown RBP17.06■□□□□ 0.32
VPS9D1-207ENST00000568691 NMRK2Q9NPI5 230 aa17.05■□□□□ 0.32
VPS9D1-207ENST00000568691 MEGF6O75095 1541 aa17.05■□□□□ 0.32
VPS9D1-207ENST00000568691 PRELPP51888 382 aa17.04■□□□□ 0.32
VPS9D1-207ENST00000568691 WDR90Q96KV7 1748 aa17.04■□□□□ 0.32
VPS9D1-207ENST00000568691 KLRG1Q96E93 195 aa17.03■□□□□ 0.32
VPS9D1-207ENST00000568691 C5P01031 1676 aa17.03■□□□□ 0.32
VPS9D1-207ENST00000568691 IP6K1Q92551 441 aa17.02■□□□□ 0.32
VPS9D1-207ENST00000568691 ZCRB1Q8TBF4 217 aaKnown RBP17.01■□□□□ 0.31
VPS9D1-207ENST00000568691 LTV1Q96GA3 475 aaPredicted RBP17.01■□□□□ 0.31
VPS9D1-207ENST00000568691 USP47Q96K76 1375 aa17.01■□□□□ 0.31
VPS9D1-207ENST00000568691 TNS4Q8IZW8 715 aa17■□□□□ 0.31
VPS9D1-207ENST00000568691 KIAA1551Q9HCM1 1747 aa17■□□□□ 0.31
VPS9D1-207ENST00000568691 TAF1LQ8IZX4 1826 aa16.99■□□□□ 0.31
VPS9D1-207ENST00000568691 PXDNLA1KZ92 1463 aa16.99■□□□□ 0.31
VPS9D1-207ENST00000568691 FBLN1P23142 703 aa16.98■□□□□ 0.31
VPS9D1-207ENST00000568691 C4BP0C0L5 1744 aa16.97■□□□□ 0.31
VPS9D1-207ENST00000568691 FLAD1Q8NFF5 587 aa16.97■□□□□ 0.31
VPS9D1-207ENST00000568691 RBM46Q8TBY0 533 aaKnown RBP16.97■□□□□ 0.31
VPS9D1-207ENST00000568691 PALLDQ8WX93 1383 aa16.97■□□□□ 0.31
VPS9D1-207ENST00000568691 RGPD2P0DJD1 1756 aa16.97■□□□□ 0.31
VPS9D1-207ENST00000568691 UBR3Q6ZT12 1888 aa16.95■□□□□ 0.3
VPS9D1-207ENST00000568691 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.95■□□□□ 0.3
VPS9D1-207ENST00000568691 MAP3K19Q56UN5 1328 aa16.95■□□□□ 0.3
VPS9D1-207ENST00000568691 PHF14O94880 888 aa16.94■□□□□ 0.3
VPS9D1-207ENST00000568691 HOXC9P31274 260 aa16.94■□□□□ 0.3
VPS9D1-207ENST00000568691 SLC12A5Q9H2X9 1139 aa16.94■□□□□ 0.3
VPS9D1-207ENST00000568691 NBPF6Q5VWK0 638 aa16.93■□□□□ 0.3
VPS9D1-207ENST00000568691 NBPF4Q96M43 638 aa16.93■□□□□ 0.3
VPS9D1-207ENST00000568691 EDC4Q6P2E9 1401 aaKnown RBP16.93■□□□□ 0.3
VPS9D1-207ENST00000568691 USHBP1Q8N6Y0 703 aa16.92■□□□□ 0.3
VPS9D1-207ENST00000568691 LINC00116Q8NCU8 138 aa16.91■□□□□ 0.3
VPS9D1-207ENST00000568691 L3MBTL2Q969R5 705 aa16.91■□□□□ 0.3
VPS9D1-207ENST00000568691 KIF13BQ9NQT8 1826 aa16.91■□□□□ 0.3
VPS9D1-207ENST00000568691 A0A1W2PP64 1363 aa16.9■□□□□ 0.3
VPS9D1-207ENST00000568691 A0A0G2JLW4 131 aa16.9■□□□□ 0.3
VPS9D1-207ENST00000568691 SLC34A2O95436 690 aa16.9■□□□□ 0.3
VPS9D1-207ENST00000568691 AK7Q96M32 723 aa16.9■□□□□ 0.3
VPS9D1-207ENST00000568691 N4BP2Q86UW6 1770 aaPredicted RBP16.89■□□□□ 0.3
VPS9D1-207ENST00000568691 MAP2P11137 1827 aaKnown RBP16.89■□□□□ 0.29
VPS9D1-207ENST00000568691 CYP27B1O15528 508 aa16.89■□□□□ 0.29
VPS9D1-207ENST00000568691 FSTL1Q12841 308 aa16.89■□□□□ 0.29
VPS9D1-207ENST00000568691 MPRIPQ6WCQ1 1025 aa16.89■□□□□ 0.29
VPS9D1-207ENST00000568691 BCS1LQ9Y276 419 aa16.89■□□□□ 0.29
VPS9D1-207ENST00000568691 KCPQ6ZWJ8 1503 aa16.88■□□□□ 0.29
VPS9D1-207ENST00000568691 MMP10P09238 476 aa16.88■□□□□ 0.29
VPS9D1-207ENST00000568691 SSFA2P28290 1259 aa16.88■□□□□ 0.29
VPS9D1-207ENST00000568691 ARHGAP27Q6ZUM4 889 aa16.88■□□□□ 0.29
VPS9D1-207ENST00000568691 C10orf71Q711Q0 1435 aa16.87■□□□□ 0.29
VPS9D1-207ENST00000568691 KCNA3P22001 575 aa16.87■□□□□ 0.29
VPS9D1-207ENST00000568691 ITPK1Q13572 414 aa16.87■□□□□ 0.29
VPS9D1-207ENST00000568691 C9orf131Q5VYM1 1079 aa16.87■□□□□ 0.29
VPS9D1-207ENST00000568691 PIGBQ92521 554 aa16.87■□□□□ 0.29
VPS9D1-207ENST00000568691 NSD3Q9BZ95 1437 aa16.87■□□□□ 0.29
VPS9D1-207ENST00000568691 HSPA1AP0DMV8 641 aaKnown RBP16.86■□□□□ 0.29
VPS9D1-207ENST00000568691 HSPA1BP0DMV9 641 aaKnown RBP16.86■□□□□ 0.29
VPS9D1-207ENST00000568691 DPEP1P16444 411 aa16.86■□□□□ 0.29
VPS9D1-207ENST00000568691 TMC1Q8TDI8 760 aa16.86■□□□□ 0.29
VPS9D1-207ENST00000568691 TGFB2P61812 414 aa16.85■□□□□ 0.29
VPS9D1-207ENST00000568691 ROCK2O75116 1388 aaKnown RBP16.85■□□□□ 0.29
VPS9D1-207ENST00000568691 HDGFL2Q7Z4V5 671 aaPredicted RBP16.84■□□□□ 0.29
VPS9D1-207ENST00000568691 CGNL1Q0VF96 1302 aa16.84■□□□□ 0.29
VPS9D1-207ENST00000568691 BRCA1P38398 1863 aaKnown RBP16.84■□□□□ 0.29
VPS9D1-207ENST00000568691 ITGB4P16144 1822 aa16.83■□□□□ 0.28
VPS9D1-207ENST00000568691 AMPHP49418 695 aa16.83■□□□□ 0.28
VPS9D1-207ENST00000568691 RRAGCQ9HB90 399 aa16.83■□□□□ 0.28
VPS9D1-207ENST00000568691 PCDH11XQ9BZA7 1347 aa16.82■□□□□ 0.28
VPS9D1-207ENST00000568691 PCDH11YQ9BZA8 1340 aa16.82■□□□□ 0.28
VPS9D1-207ENST00000568691 LOC102724428A0A0B4J2F2 783 aa16.82■□□□□ 0.28
VPS9D1-207ENST00000568691 SIK1P57059 783 aa16.82■□□□□ 0.28
VPS9D1-207ENST00000568691 RRS1Q15050 365 aaKnown RBP16.82■□□□□ 0.28
VPS9D1-207ENST00000568691 SMARCC1Q92922 1105 aaPredicted RBP16.82■□□□□ 0.28
VPS9D1-207ENST00000568691 GNPATO15228 680 aa16.81■□□□□ 0.28
VPS9D1-207ENST00000568691 FCHSD2O94868 740 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms