RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 TTC21BQ7Z4L5 1316 aa19.37■□□□□ 0.69
CLN3-235ENST00000568497 EIF4G2P78344 907 aaKnown RBP eCLIP19.37■□□□□ 0.69
CLN3-235ENST00000568497 TMF1P82094 1093 aa19.37■□□□□ 0.69
CLN3-235ENST00000568497 KTN1Q86UP2 1357 aaKnown RBP19.36■□□□□ 0.69
CLN3-235ENST00000568497 SYTL4Q96C24 671 aaPredicted RBP19.36■□□□□ 0.69
CLN3-235ENST00000568497 ZNF692Q9BU19 519 aaPredicted RBP19.36■□□□□ 0.69
CLN3-235ENST00000568497 NFAT5O94916 1531 aa19.35■□□□□ 0.69
CLN3-235ENST00000568497 ADCY9O60503 1353 aa19.35■□□□□ 0.69
CLN3-235ENST00000568497 MSL1Q68DK7 614 aa19.35■□□□□ 0.69
CLN3-235ENST00000568497 NME9Q86XW9 330 aa19.35■□□□□ 0.69
CLN3-235ENST00000568497 A0A1W2PP64 1363 aa19.34■□□□□ 0.69
CLN3-235ENST00000568497 TTC21AQ8NDW8 1320 aa19.34■□□□□ 0.69
CLN3-235ENST00000568497 CAPN15O75808 1086 aa19.34■□□□□ 0.69
CLN3-235ENST00000568497 ERBB3P21860 1342 aa19.32■□□□□ 0.68
CLN3-235ENST00000568497 APLP1P51693 650 aa19.32■□□□□ 0.68
CLN3-235ENST00000568497 DDX54Q8TDD1 881 aaKnown RBP19.32■□□□□ 0.68
CLN3-235ENST00000568497 WWC3Q9ULE0 1092 aa19.31■□□□□ 0.68
CLN3-235ENST00000568497 MON2Q7Z3U7 1717 aa19.31■□□□□ 0.68
CLN3-235ENST00000568497 FBLN1P23142 703 aa19.3■□□□□ 0.68
CLN3-235ENST00000568497 HDGFL2Q7Z4V5 671 aaPredicted RBP19.29■□□□□ 0.68
CLN3-235ENST00000568497 COL23A1Q86Y22 540 aaPredicted RBP19.29■□□□□ 0.68
CLN3-235ENST00000568497 CCNL1Q9UK58 526 aaPredicted RBP19.29■□□□□ 0.68
CLN3-235ENST00000568497 CD2APQ9Y5K6 639 aa19.28■□□□□ 0.68
CLN3-235ENST00000568497 KIF3CO14782 793 aa19.27■□□□□ 0.68
CLN3-235ENST00000568497 ANKRD24Q8TF21 1146 aa19.27■□□□□ 0.68
CLN3-235ENST00000568497 CARD14Q9BXL6 1004 aa19.27■□□□□ 0.68
CLN3-235ENST00000568497 LTN1O94822 1766 aa19.27■□□□□ 0.67
CLN3-235ENST00000568497 LY75O60449 1722 aa19.26■□□□□ 0.67
CLN3-235ENST00000568497 DOT1LQ8TEK3 1739 aa19.26■□□□□ 0.67
CLN3-235ENST00000568497 PRIM1P49642 420 aaKnown RBP19.26■□□□□ 0.67
CLN3-235ENST00000568497 USP31Q70CQ4 1352 aa19.25■□□□□ 0.67
CLN3-235ENST00000568497 TERF2IPQ9NYB0 399 aa19.25■□□□□ 0.67
CLN3-235ENST00000568497 ANKRD36BQ8N2N9 1353 aa19.23■□□□□ 0.67
CLN3-235ENST00000568497 COL13A1Q5TAT6 717 aaPredicted RBP19.23■□□□□ 0.67
CLN3-235ENST00000568497 PUS7Q96PZ0 661 aaKnown RBP19.23■□□□□ 0.67
CLN3-235ENST00000568497 GGNBP2Q9H3C7 697 aa19.23■□□□□ 0.67
CLN3-235ENST00000568497 IGSF1Q8N6C5 1336 aa19.23■□□□□ 0.67
CLN3-235ENST00000568497 DNAJC5GQ8N7S2 189 aa19.22■□□□□ 0.67
CLN3-235ENST00000568497 KIF7Q2M1P5 1343 aa19.22■□□□□ 0.67
CLN3-235ENST00000568497 USP54Q70EL1 1684 aa19.21■□□□□ 0.67
CLN3-235ENST00000568497 EDC4Q6P2E9 1401 aaKnown RBP19.21■□□□□ 0.67
CLN3-235ENST00000568497 NSD3Q9BZ95 1437 aa19.2■□□□□ 0.66
CLN3-235ENST00000568497 TOMM70O94826 608 aa19.2■□□□□ 0.66
CLN3-235ENST00000568497 NSD2O96028 1365 aa19.19■□□□□ 0.66
CLN3-235ENST00000568497 CNGB1Q14028 1251 aaPredicted RBP19.19■□□□□ 0.66
CLN3-235ENST00000568497 CDCA8Q53HL2 280 aa19.19■□□□□ 0.66
CLN3-235ENST00000568497 TNS4Q8IZW8 715 aa19.19■□□□□ 0.66
CLN3-235ENST00000568497 LTV1Q96GA3 475 aaPredicted RBP19.19■□□□□ 0.66
CLN3-235ENST00000568497 WDR90Q96KV7 1748 aa19.18■□□□□ 0.66
CLN3-235ENST00000568497 PANK3Q9H999 370 aa19.18■□□□□ 0.66
CLN3-235ENST00000568497 C5P01031 1676 aa19.17■□□□□ 0.66
CLN3-235ENST00000568497 FYB1O15117 783 aa19.16■□□□□ 0.66
CLN3-235ENST00000568497 FLAD1Q8NFF5 587 aa19.16■□□□□ 0.66
CLN3-235ENST00000568497 SLC24A1O60721 1099 aa19.15■□□□□ 0.66
CLN3-235ENST00000568497 FAM208AQ9UK61 1670 aaKnown RBP19.14■□□□□ 0.66
CLN3-235ENST00000568497 HMGB2P26583 209 aaKnown RBP19.14■□□□□ 0.65
CLN3-235ENST00000568497 PRELPP51888 382 aa19.14■□□□□ 0.65
CLN3-235ENST00000568497 WASHC2AQ641Q2 1341 aa19.14■□□□□ 0.65
CLN3-235ENST00000568497 HTRA3P83110 453 aa19.13■□□□□ 0.65
CLN3-235ENST00000568497 RRS1Q15050 365 aaKnown RBP19.13■□□□□ 0.65
CLN3-235ENST00000568497 KLRG1Q96E93 195 aa19.13■□□□□ 0.65
CLN3-235ENST00000568497 TNNT2P45379 298 aaPredicted RBP19.12■□□□□ 0.65
CLN3-235ENST00000568497 ZCRB1Q8TBF4 217 aaKnown RBP19.12■□□□□ 0.65
CLN3-235ENST00000568497 IP6K1Q92551 441 aa19.12■□□□□ 0.65
CLN3-235ENST00000568497 COG3Q96JB2 828 aa19.12■□□□□ 0.65
CLN3-235ENST00000568497 PHF14O94880 888 aa19.11■□□□□ 0.65
CLN3-235ENST00000568497 C16orf71Q8IYS4 520 aaPredicted RBP19.11■□□□□ 0.65
CLN3-235ENST00000568497 AK7Q96M32 723 aa19.11■□□□□ 0.65
CLN3-235ENST00000568497 NMRK2Q9NPI5 230 aa19.11■□□□□ 0.65
CLN3-235ENST00000568497 KIF20BQ96Q89 1820 aa19.11■□□□□ 0.65
CLN3-235ENST00000568497 CICQ96RK0 1608 aaPredicted RBP19.1■□□□□ 0.65
CLN3-235ENST00000568497 TAF1LQ8IZX4 1826 aa19.09■□□□□ 0.65
CLN3-235ENST00000568497 JMYQ8N9B5 988 aa19.08■□□□□ 0.64
CLN3-235ENST00000568497 PALLDQ8WX93 1383 aa19.07■□□□□ 0.64
CLN3-235ENST00000568497 MAP3K19Q56UN5 1328 aa19.07■□□□□ 0.64
CLN3-235ENST00000568497 MEGF6O75095 1541 aa19.07■□□□□ 0.64
CLN3-235ENST00000568497 C4BP0C0L5 1744 aa19.07■□□□□ 0.64
CLN3-235ENST00000568497 RBM46Q8TBY0 533 aaKnown RBP19.06■□□□□ 0.64
CLN3-235ENST00000568497 BCS1LQ9Y276 419 aa19.06■□□□□ 0.64
CLN3-235ENST00000568497 SMIM5Q71RC9 77 aa19.05■□□□□ 0.64
CLN3-235ENST00000568497 RGPD2P0DJD1 1756 aa19.05■□□□□ 0.64
CLN3-235ENST00000568497 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.04■□□□□ 0.64
CLN3-235ENST00000568497 ARHGAP27Q6ZUM4 889 aa19.04■□□□□ 0.64
CLN3-235ENST00000568497 TOGARAM1Q9Y4F4 1720 aa19.04■□□□□ 0.64
CLN3-235ENST00000568497 EMILIN1Q9Y6C2 1016 aa19.04■□□□□ 0.64
CLN3-235ENST00000568497 PPM1GO15355 546 aaPredicted RBP19.03■□□□□ 0.64
CLN3-235ENST00000568497 MPRIPQ6WCQ1 1025 aa19.03■□□□□ 0.64
CLN3-235ENST00000568497 AMIGO3Q86WK7 504 aa19.03■□□□□ 0.64
CLN3-235ENST00000568497 UBR3Q6ZT12 1888 aa19.03■□□□□ 0.64
CLN3-235ENST00000568497 CGNL1Q0VF96 1302 aa19.02■□□□□ 0.64
CLN3-235ENST00000568497 AMPHP49418 695 aa19.02■□□□□ 0.64
CLN3-235ENST00000568497 CC2D1BQ5T0F9 858 aaKnown RBP19.02■□□□□ 0.64
CLN3-235ENST00000568497 FSTL1Q12841 308 aa19.01■□□□□ 0.63
CLN3-235ENST00000568497 PXDNLA1KZ92 1463 aa19.01■□□□□ 0.63
CLN3-235ENST00000568497 N4BP2Q86UW6 1770 aaPredicted RBP19.01■□□□□ 0.63
CLN3-235ENST00000568497 HOXC9P31274 260 aa19■□□□□ 0.63
CLN3-235ENST00000568497 RAPGEF4Q8WZA2 1011 aa19■□□□□ 0.63
CLN3-235ENST00000568497 SSFA2P28290 1259 aa18.99■□□□□ 0.63
CLN3-235ENST00000568497 HSP90AB2PQ58FF8 381 aa18.99■□□□□ 0.63
CLN3-235ENST00000568497 USHBP1Q8N6Y0 703 aa18.99■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms