RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 SYTL4Q96C24 671 aaPredicted RBP17.06■□□□□ 0.32
CLK3-222ENST00000568232 KIAA1210Q9ULL0 1709 aa17.06■□□□□ 0.32
CLK3-222ENST00000568232 ADCY9O60503 1353 aa17.05■□□□□ 0.32
CLK3-222ENST00000568232 TTC21AQ8NDW8 1320 aa17.05■□□□□ 0.32
CLK3-222ENST00000568232 ANKRD24Q8TF21 1146 aa17.05■□□□□ 0.32
CLK3-222ENST00000568232 PRIM1P49642 420 aaKnown RBP17.04■□□□□ 0.32
CLK3-222ENST00000568232 EVC2Q86UK5 1308 aa17.03■□□□□ 0.32
CLK3-222ENST00000568232 WWC3Q9ULE0 1092 aa17.03■□□□□ 0.32
CLK3-222ENST00000568232 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.02■□□□□ 0.32
CLK3-222ENST00000568232 KIF3CO14782 793 aa17.01■□□□□ 0.31
CLK3-222ENST00000568232 CAPN15O75808 1086 aa17.01■□□□□ 0.31
CLK3-222ENST00000568232 DSG3P32926 999 aa17.01■□□□□ 0.31
CLK3-222ENST00000568232 CCNL1Q9UK58 526 aaPredicted RBP17.01■□□□□ 0.31
CLK3-222ENST00000568232 KAT6BQ8WYB5 2073 aa17.01■□□□□ 0.31
CLK3-222ENST00000568232 KTN1Q86UP2 1357 aaKnown RBP17.01■□□□□ 0.31
CLK3-222ENST00000568232 CD2APQ9Y5K6 639 aa17■□□□□ 0.31
CLK3-222ENST00000568232 NSD2O96028 1365 aa17■□□□□ 0.31
CLK3-222ENST00000568232 NME9Q86XW9 330 aa16.99■□□□□ 0.31
CLK3-222ENST00000568232 DNAJC5GQ8N7S2 189 aa16.99■□□□□ 0.31
CLK3-222ENST00000568232 ANKRD36BQ8N2N9 1353 aa16.98■□□□□ 0.31
CLK3-222ENST00000568232 LTV1Q96GA3 475 aaPredicted RBP16.97■□□□□ 0.31
CLK3-222ENST00000568232 APLP1P51693 650 aa16.96■□□□□ 0.31
CLK3-222ENST00000568232 USP31Q70CQ4 1352 aa16.96■□□□□ 0.31
CLK3-222ENST00000568232 LY75O60449 1722 aa16.96■□□□□ 0.3
CLK3-222ENST00000568232 IGSF1Q8N6C5 1336 aa16.94■□□□□ 0.3
CLK3-222ENST00000568232 DOT1LQ8TEK3 1739 aa16.93■□□□□ 0.3
CLK3-222ENST00000568232 LTN1O94822 1766 aa16.93■□□□□ 0.3
CLK3-222ENST00000568232 COL13A1Q5TAT6 717 aaPredicted RBP16.93■□□□□ 0.3
CLK3-222ENST00000568232 USP47Q96K76 1375 aa16.91■□□□□ 0.3
CLK3-222ENST00000568232 SBNO2Q9Y2G9 1366 aa16.91■□□□□ 0.3
CLK3-222ENST00000568232 SMIM5Q71RC9 77 aa16.91■□□□□ 0.3
CLK3-222ENST00000568232 ZCRB1Q8TBF4 217 aaKnown RBP16.91■□□□□ 0.3
CLK3-222ENST00000568232 AMIGO3Q86WK7 504 aa16.9■□□□□ 0.3
CLK3-222ENST00000568232 IP6K1Q92551 441 aa16.9■□□□□ 0.3
CLK3-222ENST00000568232 TOMM70O94826 608 aa16.89■□□□□ 0.29
CLK3-222ENST00000568232 HTRA3P83110 453 aa16.89■□□□□ 0.29
CLK3-222ENST00000568232 MON2Q7Z3U7 1717 aa16.89■□□□□ 0.29
CLK3-222ENST00000568232 CD163L1Q9NR16 1453 aa16.88■□□□□ 0.29
CLK3-222ENST00000568232 USP54Q70EL1 1684 aa16.88■□□□□ 0.29
CLK3-222ENST00000568232 FLAD1Q8NFF5 587 aa16.87■□□□□ 0.29
CLK3-222ENST00000568232 MEGF6O75095 1541 aa16.86■□□□□ 0.29
CLK3-222ENST00000568232 FBLN1P23142 703 aa16.86■□□□□ 0.29
CLK3-222ENST00000568232 TMC1Q8TDI8 760 aa16.86■□□□□ 0.29
CLK3-222ENST00000568232 PCNTO95613 3336 aa16.86■□□□□ 0.29
CLK3-222ENST00000568232 PHF14O94880 888 aa16.85■□□□□ 0.29
CLK3-222ENST00000568232 NMRK2Q9NPI5 230 aa16.85■□□□□ 0.29
CLK3-222ENST00000568232 C5P01031 1676 aa16.85■□□□□ 0.29
CLK3-222ENST00000568232 L3MBTL2Q969R5 705 aa16.84■□□□□ 0.29
CLK3-222ENST00000568232 SLC12A5Q9H2X9 1139 aa16.84■□□□□ 0.29
CLK3-222ENST00000568232 HOXC9P31274 260 aa16.83■□□□□ 0.28
CLK3-222ENST00000568232 HDGFL2Q7Z4V5 671 aaPredicted RBP16.83■□□□□ 0.28
CLK3-222ENST00000568232 AK7Q96M32 723 aa16.83■□□□□ 0.28
CLK3-222ENST00000568232 FAM208AQ9UK61 1670 aaKnown RBP16.83■□□□□ 0.28
CLK3-222ENST00000568232 PALLDQ8WX93 1383 aa16.82■□□□□ 0.28
CLK3-222ENST00000568232 MPRIPQ6WCQ1 1025 aa16.82■□□□□ 0.28
CLK3-222ENST00000568232 TNS4Q8IZW8 715 aa16.82■□□□□ 0.28
CLK3-222ENST00000568232 USHBP1Q8N6Y0 703 aa16.82■□□□□ 0.28
CLK3-222ENST00000568232 KLRG1Q96E93 195 aa16.82■□□□□ 0.28
CLK3-222ENST00000568232 ROCK2O75116 1388 aaKnown RBP16.81■□□□□ 0.28
CLK3-222ENST00000568232 MAP3K19Q56UN5 1328 aa16.81■□□□□ 0.28
CLK3-222ENST00000568232 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.81■□□□□ 0.28
CLK3-222ENST00000568232 NBPF6Q5VWK0 638 aa16.81■□□□□ 0.28
CLK3-222ENST00000568232 JMYQ8N9B5 988 aa16.81■□□□□ 0.28
CLK3-222ENST00000568232 NBPF4Q96M43 638 aa16.81■□□□□ 0.28
CLK3-222ENST00000568232 EDC4Q6P2E9 1401 aaKnown RBP16.8■□□□□ 0.28
CLK3-222ENST00000568232 AMPHP49418 695 aa16.8■□□□□ 0.28
CLK3-222ENST00000568232 PRELPP51888 382 aa16.8■□□□□ 0.28
CLK3-222ENST00000568232 RGPD2P0DJD1 1756 aa16.79■□□□□ 0.28
CLK3-222ENST00000568232 WDR90Q96KV7 1748 aa16.79■□□□□ 0.28
CLK3-222ENST00000568232 TOGARAM1Q9Y4F4 1720 aa16.79■□□□□ 0.28
CLK3-222ENST00000568232 CICQ96RK0 1608 aaPredicted RBP16.79■□□□□ 0.28
CLK3-222ENST00000568232 C4BP0C0L5 1744 aa16.79■□□□□ 0.28
CLK3-222ENST00000568232 A0A1W2PP64 1363 aa16.78■□□□□ 0.28
CLK3-222ENST00000568232 TAF1LQ8IZX4 1826 aa16.78■□□□□ 0.28
CLK3-222ENST00000568232 ARHGAP27Q6ZUM4 889 aa16.78■□□□□ 0.28
CLK3-222ENST00000568232 BCS1LQ9Y276 419 aa16.78■□□□□ 0.28
CLK3-222ENST00000568232 A0A0G2JLW4 131 aa16.77■□□□□ 0.28
CLK3-222ENST00000568232 RBM46Q8TBY0 533 aaKnown RBP16.77■□□□□ 0.28
CLK3-222ENST00000568232 PXDNLA1KZ92 1463 aa16.76■□□□□ 0.27
CLK3-222ENST00000568232 SAMD1Q6SPF0 538 aaPredicted RBP16.76■□□□□ 0.27
CLK3-222ENST00000568232 RAPGEF4Q8WZA2 1011 aa16.76■□□□□ 0.27
CLK3-222ENST00000568232 MYCNP04198 464 aaPredicted RBP16.75■□□□□ 0.27
CLK3-222ENST00000568232 MMP10P09238 476 aa16.75■□□□□ 0.27
CLK3-222ENST00000568232 SSFA2P28290 1259 aa16.75■□□□□ 0.27
CLK3-222ENST00000568232 LINC00116Q8NCU8 138 aa16.75■□□□□ 0.27
CLK3-222ENST00000568232 TERF2IPQ9NYB0 399 aa16.75■□□□□ 0.27
CLK3-222ENST00000568232 TATP17735 454 aaPredicted RBP16.74■□□□□ 0.27
CLK3-222ENST00000568232 HMGB2P26583 209 aaKnown RBP16.74■□□□□ 0.27
CLK3-222ENST00000568232 RRS1Q15050 365 aaKnown RBP16.74■□□□□ 0.27
CLK3-222ENST00000568232 C16orf71Q8IYS4 520 aaPredicted RBP16.74■□□□□ 0.27
CLK3-222ENST00000568232 COG3Q96JB2 828 aa16.74■□□□□ 0.27
CLK3-222ENST00000568232 UBR3Q6ZT12 1888 aa16.73■□□□□ 0.27
CLK3-222ENST00000568232 CGNL1Q0VF96 1302 aa16.73■□□□□ 0.27
CLK3-222ENST00000568232 CYP27B1O15528 508 aa16.73■□□□□ 0.27
CLK3-222ENST00000568232 PIGBQ92521 554 aa16.73■□□□□ 0.27
CLK3-222ENST00000568232 SMARCC1Q92922 1105 aaPredicted RBP16.73■□□□□ 0.27
CLK3-222ENST00000568232 PCDH11XQ9BZA7 1347 aa16.72■□□□□ 0.27
CLK3-222ENST00000568232 PCDH11YQ9BZA8 1340 aa16.72■□□□□ 0.27
CLK3-222ENST00000568232 FSTL1Q12841 308 aa16.72■□□□□ 0.27
CLK3-222ENST00000568232 C9orf131Q5VYM1 1079 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms