RNA–Protein interactions for RNA: ENST00000566009.5

SMPD3-206, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 4

Gene SMPD3, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-206ENST00000566009 ITSN1Q15811 1721 aa13.64□□□□□ -0.23
SMPD3-206ENST00000566009 PLEKHG3A1L390 1219 aa13.63□□□□□ -0.23
SMPD3-206ENST00000566009 CREBZFQ9NS37 354 aa13.63□□□□□ -0.23
SMPD3-206ENST00000566009 NLRP6P59044 892 aa13.62□□□□□ -0.23
SMPD3-206ENST00000566009 WBP1LQ9NX94 342 aa13.62□□□□□ -0.23
SMPD3-206ENST00000566009 CCDC61Q9Y6R9 512 aa13.62□□□□□ -0.23
SMPD3-206ENST00000566009 PIK3C2AO00443 1686 aa13.62□□□□□ -0.23
SMPD3-206ENST00000566009 TNRC6CQ9HCJ0 1690 aaKnown RBP13.61□□□□□ -0.23
SMPD3-206ENST00000566009 HSPA8P11142 646 aaKnown RBP13.61□□□□□ -0.23
SMPD3-206ENST00000566009 SYTL4Q96C24 671 aaPredicted RBP13.61□□□□□ -0.23
SMPD3-206ENST00000566009 FCHSD2O94868 740 aa13.6□□□□□ -0.23
SMPD3-206ENST00000566009 IL2RBP14784 551 aa13.6□□□□□ -0.23
SMPD3-206ENST00000566009 VEGFAP15692 232 aaPredicted RBP13.6□□□□□ -0.23
SMPD3-206ENST00000566009 PRIM1P49642 420 aaKnown RBP13.6□□□□□ -0.23
SMPD3-206ENST00000566009 SMIM5Q71RC9 77 aa13.6□□□□□ -0.23
SMPD3-206ENST00000566009 ARHGEF25Q86VW2 580 aa13.6□□□□□ -0.23
SMPD3-206ENST00000566009 CFAP44Q96MT7 982 aa13.6□□□□□ -0.23
SMPD3-206ENST00000566009 SLC4A1APQ9BWU0 796 aaKnown RBP13.6□□□□□ -0.23
SMPD3-206ENST00000566009 RNF181Q9P0P0 153 aa13.6□□□□□ -0.23
SMPD3-206ENST00000566009 LY75O60449 1722 aa13.59□□□□□ -0.23
SMPD3-206ENST00000566009 A0A0G2JLW4 131 aa13.59□□□□□ -0.23
SMPD3-206ENST00000566009 TGFB2P61812 414 aa13.59□□□□□ -0.23
SMPD3-206ENST00000566009 CDK19Q9BWU1 502 aa13.59□□□□□ -0.23
SMPD3-206ENST00000566009 SLIT3O75094 1523 aa13.59□□□□□ -0.23
SMPD3-206ENST00000566009 CNTNAP1P78357 1384 aa13.58□□□□□ -0.23
SMPD3-206ENST00000566009 PDE4DIPQ5VU43 2346 aa13.58□□□□□ -0.23
SMPD3-206ENST00000566009 CPSF1Q10570 1443 aaKnown RBP13.58□□□□□ -0.24
SMPD3-206ENST00000566009 ERBB3P21860 1342 aa13.58□□□□□ -0.24
SMPD3-206ENST00000566009 RGPD5Q99666 1765 aa13.58□□□□□ -0.24
SMPD3-206ENST00000566009 PKD1L3Q7Z443 1732 aa13.57□□□□□ -0.24
SMPD3-206ENST00000566009 DDX54Q8TDD1 881 aaKnown RBP13.56□□□□□ -0.24
SMPD3-206ENST00000566009 VEGFBP49765 207 aa13.55□□□□□ -0.24
SMPD3-206ENST00000566009 NSD2O96028 1365 aa13.55□□□□□ -0.24
SMPD3-206ENST00000566009 ANKRD36BQ8N2N9 1353 aa13.55□□□□□ -0.24
SMPD3-206ENST00000566009 TNRC18O15417 2968 aaPredicted RBP13.55□□□□□ -0.24
SMPD3-206ENST00000566009 PRPF38BQ5VTL8 546 aaKnown RBP13.54□□□□□ -0.24
SMPD3-206ENST00000566009 AMIGO3Q86WK7 504 aa13.54□□□□□ -0.24
SMPD3-206ENST00000566009 NLRP2Q9NX02 1062 aa13.54□□□□□ -0.24
SMPD3-206ENST00000566009 ADGRB1O14514 1584 aa13.54□□□□□ -0.24
SMPD3-206ENST00000566009 N4BP2Q86UW6 1770 aaPredicted RBP13.53□□□□□ -0.24
SMPD3-206ENST00000566009 DPEP1P16444 411 aa13.53□□□□□ -0.24
SMPD3-206ENST00000566009 USP54Q70EL1 1684 aa13.53□□□□□ -0.24
SMPD3-206ENST00000566009 KIAA1551Q9HCM1 1747 aa13.53□□□□□ -0.24
SMPD3-206ENST00000566009 GLTPD2A6NH11 291 aa13.52□□□□□ -0.25
SMPD3-206ENST00000566009 QRICH2Q9H0J4 1663 aa13.51□□□□□ -0.25
SMPD3-206ENST00000566009 USP47Q96K76 1375 aa13.51□□□□□ -0.25
SMPD3-206ENST00000566009 SOX12O15370 315 aa13.51□□□□□ -0.25
SMPD3-206ENST00000566009 PHF14O94880 888 aa13.51□□□□□ -0.25
SMPD3-206ENST00000566009 KCNH5Q8NCM2 988 aa13.51□□□□□ -0.25
SMPD3-206ENST00000566009 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.5□□□□□ -0.25
SMPD3-206ENST00000566009 HMGB2P26583 209 aaKnown RBP13.5□□□□□ -0.25
SMPD3-206ENST00000566009 POTECB2RU33 542 aa13.49□□□□□ -0.25
SMPD3-206ENST00000566009 MMP10P09238 476 aa13.49□□□□□ -0.25
SMPD3-206ENST00000566009 DCAF5Q96JK2 942 aa13.49□□□□□ -0.25
SMPD3-206ENST00000566009 AK7Q96M32 723 aa13.49□□□□□ -0.25
SMPD3-206ENST00000566009 KIF13BQ9NQT8 1826 aa13.48□□□□□ -0.25
SMPD3-206ENST00000566009 ZC3H4Q9UPT8 1303 aaKnown RBP13.48□□□□□ -0.25
SMPD3-206ENST00000566009 C5P01031 1676 aa13.48□□□□□ -0.25
SMPD3-206ENST00000566009 KCNA3P22001 575 aa13.48□□□□□ -0.25
SMPD3-206ENST00000566009 MAP2K1Q02750 393 aaPredicted RBP13.48□□□□□ -0.25
SMPD3-206ENST00000566009 CHADLQ6NUI6 762 aa13.47□□□□□ -0.25
SMPD3-206ENST00000566009 VIRMAQ69YN4 1812 aaKnown RBP13.47□□□□□ -0.25
SMPD3-206ENST00000566009 MCOLN1Q9GZU1 580 aa13.46□□□□□ -0.25
SMPD3-206ENST00000566009 PIM2Q9P1W9 311 aa13.46□□□□□ -0.25
SMPD3-206ENST00000566009 SBF1O95248 1867 aa13.46□□□□□ -0.26
SMPD3-206ENST00000566009 ARFGEF1Q9Y6D6 1849 aa13.45□□□□□ -0.26
SMPD3-206ENST00000566009 DOT1LQ8TEK3 1739 aa13.44□□□□□ -0.26
SMPD3-206ENST00000566009 BRCA1P38398 1863 aaKnown RBP13.44□□□□□ -0.26
SMPD3-206ENST00000566009 LOC105371045A0A1W2PR82 267 aa13.44□□□□□ -0.26
SMPD3-206ENST00000566009 SSFA2P28290 1259 aa13.44□□□□□ -0.26
SMPD3-206ENST00000566009 DALRD3Q5D0E6 543 aaKnown RBP13.44□□□□□ -0.26
SMPD3-206ENST00000566009 TOGARAM1Q9Y4F4 1720 aa13.44□□□□□ -0.26
SMPD3-206ENST00000566009 PASKQ96RG2 1323 aa13.42□□□□□ -0.26
SMPD3-206ENST00000566009 TAF1LQ8IZX4 1826 aa13.42□□□□□ -0.26
SMPD3-206ENST00000566009 TMEM88BA6NKF7 163 aa13.42□□□□□ -0.26
SMPD3-206ENST00000566009 CCDC87Q9NVE4 849 aa13.42□□□□□ -0.26
SMPD3-206ENST00000566009 C4BP0C0L5 1744 aa13.42□□□□□ -0.26
SMPD3-206ENST00000566009 NSD3Q9BZ95 1437 aa13.41□□□□□ -0.26
SMPD3-206ENST00000566009 POTEIP0CG38 1075 aa13.41□□□□□ -0.26
SMPD3-206ENST00000566009 POTEJP0CG39 1038 aa13.41□□□□□ -0.26
SMPD3-206ENST00000566009 RASSF7Q02833 373 aa13.41□□□□□ -0.26
SMPD3-206ENST00000566009 DEFB115Q30KQ5 88 aa13.41□□□□□ -0.26
SMPD3-206ENST00000566009 ANKRD24Q8TF21 1146 aa13.41□□□□□ -0.26
SMPD3-206ENST00000566009 WDR33Q9C0J8 1336 aaKnown RBP13.4□□□□□ -0.26
SMPD3-206ENST00000566009 UBR3Q6ZT12 1888 aa13.4□□□□□ -0.26
SMPD3-206ENST00000566009 LMNB1P20700 586 aa13.4□□□□□ -0.26
SMPD3-206ENST00000566009 CABP1Q9NZU7 370 aa13.4□□□□□ -0.26
SMPD3-206ENST00000566009 PALLDQ8WX93 1383 aa13.4□□□□□ -0.26
SMPD3-206ENST00000566009 KDM6AO15550 1401 aaPredicted RBP13.39□□□□□ -0.27
SMPD3-206ENST00000566009 RASSF10A6NK89 507 aa13.39□□□□□ -0.27
SMPD3-206ENST00000566009 DLL1O00548 723 aa13.39□□□□□ -0.27
SMPD3-206ENST00000566009 SRPK2P78362 688 aaKnown RBP13.39□□□□□ -0.27
SMPD3-206ENST00000566009 GCC1Q96CN9 775 aa13.39□□□□□ -0.27
SMPD3-206ENST00000566009 BEGAINQ9BUH8 593 aa13.39□□□□□ -0.27
SMPD3-206ENST00000566009 NFAT5O94916 1531 aa13.39□□□□□ -0.27
SMPD3-206ENST00000566009 DPY19L2Q6NUT2 758 aa13.38□□□□□ -0.27
SMPD3-206ENST00000566009 NLGN1Q8N2Q7 840 aa13.38□□□□□ -0.27
SMPD3-206ENST00000566009 CABP2Q9NPB3 220 aa13.38□□□□□ -0.27
SMPD3-206ENST00000566009 SOX10P56693 466 aa13.37□□□□□ -0.27
SMPD3-206ENST00000566009 DGKZQ13574 1117 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms