RNA–Protein interactions for RNA: ENST00000564841.1

LINC00554-201, long intergenic non-protein coding RNA 554, humanhuman

BASIC

Gene LINC00554, Length 3,011 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00554-201ENST00000564841 TMEM63CQ9P1W3 806 aa20.04■□□□□ 0.8
LINC00554-201ENST00000564841 PTMSP20962 102 aa20.04■□□□□ 0.8
LINC00554-201ENST00000564841 HMOX1P09601 288 aa20.03■□□□□ 0.8
LINC00554-201ENST00000564841 HS1BP3Q53T59 392 aa20.03■□□□□ 0.8
LINC00554-201ENST00000564841 RRS1Q15050 365 aaKnown RBP20.02■□□□□ 0.8
LINC00554-201ENST00000564841 ZNF710Q8N1W2 664 aa20.02■□□□□ 0.8
LINC00554-201ENST00000564841 EMILIN1Q9Y6C2 1016 aa20.02■□□□□ 0.8
LINC00554-201ENST00000564841 ABCC11Q96J66 1382 aa20.02■□□□□ 0.8
LINC00554-201ENST00000564841 PUS7Q96PZ0 661 aaKnown RBP20.02■□□□□ 0.79
LINC00554-201ENST00000564841 IBTKQ9P2D0 1353 aaPredicted RBP20.01■□□□□ 0.79
LINC00554-201ENST00000564841 ATP2B3Q16720 1220 aa20.01■□□□□ 0.79
LINC00554-201ENST00000564841 ROBO2Q9HCK4 1378 aa20.01■□□□□ 0.79
LINC00554-201ENST00000564841 SPDYE4A6NLX3 237 aa20■□□□□ 0.79
LINC00554-201ENST00000564841 PTMAP06454 111 aaKnown RBP20■□□□□ 0.79
LINC00554-201ENST00000564841 TMPOP42166 694 aaKnown RBP20■□□□□ 0.79
LINC00554-201ENST00000564841 TPRNQ4KMQ1 711 aa20■□□□□ 0.79
LINC00554-201ENST00000564841 AMOTL2Q9Y2J4 779 aa20■□□□□ 0.79
LINC00554-201ENST00000564841 BMP2KLQ5H9B9 411 aa20■□□□□ 0.79
LINC00554-201ENST00000564841 KIF16BQ96L93 1317 aa20■□□□□ 0.79
LINC00554-201ENST00000564841 PPIP5K1Q6PFW1 1433 aa20■□□□□ 0.79
LINC00554-201ENST00000564841 CLEC17AQ6ZS10 378 aa20■□□□□ 0.79
LINC00554-201ENST00000564841 TRIM35Q9UPQ4 493 aa20■□□□□ 0.79
LINC00554-201ENST00000564841 CCDC61Q9Y6R9 512 aa20■□□□□ 0.79
LINC00554-201ENST00000564841 CSPP1Q1MSJ5 1256 aa19.99■□□□□ 0.79
LINC00554-201ENST00000564841 FOXD4L6Q3SYB3 417 aaPredicted RBP19.99■□□□□ 0.79
LINC00554-201ENST00000564841 FOXD4L3Q6VB84 417 aaPredicted RBP19.99■□□□□ 0.79
LINC00554-201ENST00000564841 DIAPH1O60610 1272 aaKnown RBP19.99■□□□□ 0.79
LINC00554-201ENST00000564841 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.99■□□□□ 0.79
LINC00554-201ENST00000564841 CD163L1Q9NR16 1453 aa19.98■□□□□ 0.79
LINC00554-201ENST00000564841 ZDHHC9Q9Y397 364 aa19.98■□□□□ 0.79
LINC00554-201ENST00000564841 PRR36Q9H6K5 1346 aa19.97■□□□□ 0.79
LINC00554-201ENST00000564841 BBXQ8WY36 941 aaPredicted RBP19.97■□□□□ 0.79
LINC00554-201ENST00000564841 MTERF4Q7Z6M4 381 aaKnown RBP19.96■□□□□ 0.79
LINC00554-201ENST00000564841 PPP4R3BQ5MIZ7 849 aa19.96■□□□□ 0.79
LINC00554-201ENST00000564841 CCDC39Q9UFE4 941 aa19.96■□□□□ 0.79
LINC00554-201ENST00000564841 IQSEC2Q5JU85 1478 aa19.95■□□□□ 0.78
LINC00554-201ENST00000564841 POLKQ9UBT6 870 aa19.95■□□□□ 0.78
LINC00554-201ENST00000564841 LRSAM1Q6UWE0 723 aa19.95■□□□□ 0.78
LINC00554-201ENST00000564841 CYP2E1P05181 493 aaPredicted RBP19.94■□□□□ 0.78
LINC00554-201ENST00000564841 NUTM2GQ5VZR2 741 aa19.94■□□□□ 0.78
LINC00554-201ENST00000564841 THEMISQ8N1K5 641 aaPredicted RBP19.94■□□□□ 0.78
LINC00554-201ENST00000564841 COG3Q96JB2 828 aa19.94■□□□□ 0.78
LINC00554-201ENST00000564841 NSD2O96028 1365 aa19.93■□□□□ 0.78
LINC00554-201ENST00000564841 MYRIPQ8NFW9 859 aa19.93■□□□□ 0.78
LINC00554-201ENST00000564841 UTP14CQ5TAP6 766 aaKnown RBP19.93■□□□□ 0.78
LINC00554-201ENST00000564841 GSPT1P15170 499 aaKnown RBP19.92■□□□□ 0.78
LINC00554-201ENST00000564841 TTC12Q9H892 705 aaPredicted RBP19.92■□□□□ 0.78
LINC00554-201ENST00000564841 NUCB2P80303 420 aa19.92■□□□□ 0.78
LINC00554-201ENST00000564841 PRKAR2BP31323 418 aa19.92■□□□□ 0.78
LINC00554-201ENST00000564841 KIAA2012Q0VF49 1180 aa19.92■□□□□ 0.78
LINC00554-201ENST00000564841 CCDC27Q2M243 656 aa19.92■□□□□ 0.78
LINC00554-201ENST00000564841 PLEKHF1Q96S99 279 aa19.92■□□□□ 0.78
LINC00554-201ENST00000564841 C14orf37Q86TY3 774 aa19.91■□□□□ 0.78
LINC00554-201ENST00000564841 C16orf71Q8IYS4 520 aaPredicted RBP19.91■□□□□ 0.78
LINC00554-201ENST00000564841 ACEP12821 1306 aa19.91■□□□□ 0.78
LINC00554-201ENST00000564841 ADAMTS13Q76LX8 1427 aa19.91■□□□□ 0.78
LINC00554-201ENST00000564841 SIRT2Q8IXJ6 389 aa19.91■□□□□ 0.78
LINC00554-201ENST00000564841 NRXN3Q9Y4C0 1643 aa19.91■□□□□ 0.78
LINC00554-201ENST00000564841 NGDNQ8NEJ9 315 aaKnown RBP19.9■□□□□ 0.78
LINC00554-201ENST00000564841 PHACTR3Q96KR7 559 aa19.9■□□□□ 0.78
LINC00554-201ENST00000564841 SHPRHQ149N8 1683 aa19.9■□□□□ 0.78
LINC00554-201ENST00000564841 GTF2E1P29083 439 aaPredicted RBP19.9■□□□□ 0.78
LINC00554-201ENST00000564841 TSPYL6Q8N831 410 aa19.9■□□□□ 0.78
LINC00554-201ENST00000564841 ZBTB22O15209 634 aa19.89■□□□□ 0.78
LINC00554-201ENST00000564841 GDPD2Q9HCC8 539 aa19.89■□□□□ 0.78
LINC00554-201ENST00000564841 KCNA6P17658 529 aa19.89■□□□□ 0.77
LINC00554-201ENST00000564841 MCM5P33992 734 aa19.89■□□□□ 0.77
LINC00554-201ENST00000564841 APBB1O00213 710 aa19.88■□□□□ 0.77
LINC00554-201ENST00000564841 DCTN1Q14203 1278 aa19.88■□□□□ 0.77
LINC00554-201ENST00000564841 CDC45O75419 566 aa19.87■□□□□ 0.77
LINC00554-201ENST00000564841 UBR1Q8IWV7 1749 aa19.87■□□□□ 0.77
LINC00554-201ENST00000564841 NOL8Q76FK4 1167 aaKnown RBP19.87■□□□□ 0.77
LINC00554-201ENST00000564841 OTUD7AQ8TE49 926 aaPredicted RBP19.87■□□□□ 0.77
LINC00554-201ENST00000564841 FAM83GA6ND36 823 aa19.86■□□□□ 0.77
LINC00554-201ENST00000564841 RABEP1Q15276 862 aa19.86■□□□□ 0.77
LINC00554-201ENST00000564841 PTPRUQ92729 1446 aa19.86■□□□□ 0.77
LINC00554-201ENST00000564841 U2AF2P26368 475 aaKnown RBP eCLIP19.86■□□□□ 0.77
LINC00554-201ENST00000564841 NOLC1Q14978 699 aaKnown RBP eCLIP19.86■□□□□ 0.77
LINC00554-201ENST00000564841 USP25Q9UHP3 1055 aa19.86■□□□□ 0.77
LINC00554-201ENST00000564841 ZBTB7BO15156 539 aaPredicted RBP19.85■□□□□ 0.77
LINC00554-201ENST00000564841 PDE4CQ08493 712 aa19.85■□□□□ 0.77
LINC00554-201ENST00000564841 BCL2L12Q9HB09 334 aa19.85■□□□□ 0.77
LINC00554-201ENST00000564841 PLEKHG1Q9ULL1 1385 aa19.85■□□□□ 0.77
LINC00554-201ENST00000564841 VGLL3A8MV65 326 aa19.84■□□□□ 0.77
LINC00554-201ENST00000564841 USP26Q9BXU7 913 aa19.84■□□□□ 0.77
LINC00554-201ENST00000564841 BCL11BQ9C0K0 894 aaPredicted RBP19.84■□□□□ 0.77
LINC00554-201ENST00000564841 SETD1AO15047 1707 aaKnown RBP19.83■□□□□ 0.77
LINC00554-201ENST00000564841 GADD45BO75293 160 aaPredicted RBP19.83■□□□□ 0.76
LINC00554-201ENST00000564841 PLCB2Q00722 1185 aa19.82■□□□□ 0.76
LINC00554-201ENST00000564841 CPS1P31327 1500 aa19.82■□□□□ 0.76
LINC00554-201ENST00000564841 DLC1Q96QB1 1528 aa19.82■□□□□ 0.76
LINC00554-201ENST00000564841 TSPY26PQ9H489 355 aa19.82■□□□□ 0.76
LINC00554-201ENST00000564841 C3P01024 1663 aa19.82■□□□□ 0.76
LINC00554-201ENST00000564841 IPO8O15397 1037 aaKnown RBP19.81■□□□□ 0.76
LINC00554-201ENST00000564841 SMARCA5O60264 1052 aaPredicted RBP19.81■□□□□ 0.76
LINC00554-201ENST00000564841 KIF3AQ9Y496 699 aa19.81■□□□□ 0.76
LINC00554-201ENST00000564841 TTC21BQ7Z4L5 1316 aa19.81■□□□□ 0.76
LINC00554-201ENST00000564841 MAPK8IP2Q13387 824 aaPredicted RBP19.81■□□□□ 0.76
LINC00554-201ENST00000564841 AEBP1Q8IUX7 1158 aa19.81■□□□□ 0.76
LINC00554-201ENST00000564841 PLEKHM2Q8IWE5 1019 aa19.81■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms