RNA–Protein interactions for RNA: ENST00000564247.1

CMTM3-208, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

TSL 2

Gene CMTM3, Length 1,127 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-208ENST00000564247 SMG6Q86US8 1419 aaKnown RBP22.63■■□□□ 1.21
CMTM3-208ENST00000564247 INSRP06213 1382 aa22.63■■□□□ 1.21
CMTM3-208ENST00000564247 DIAPH1O60610 1272 aaKnown RBP22.62■■□□□ 1.21
CMTM3-208ENST00000564247 APBA3O96018 575 aa22.62■■□□□ 1.21
CMTM3-208ENST00000564247 WDR43Q15061 677 aaKnown RBP eCLIP22.62■■□□□ 1.21
CMTM3-208ENST00000564247 PNISRQ8TF01 805 aaKnown RBP22.61■■□□□ 1.21
CMTM3-208ENST00000564247 HSP90AB2PQ58FF8 381 aa22.6■■□□□ 1.21
CMTM3-208ENST00000564247 FAM9BQ8IZU0 186 aa22.6■■□□□ 1.21
CMTM3-208ENST00000564247 CAMKK2Q96RR4 588 aa22.6■■□□□ 1.21
CMTM3-208ENST00000564247 EZH2Q15910 746 aaKnown RBP22.58■■□□□ 1.21
CMTM3-208ENST00000564247 BCL11BQ9C0K0 894 aaPredicted RBP22.58■■□□□ 1.21
CMTM3-208ENST00000564247 NBPF6Q5VWK0 638 aa22.57■■□□□ 1.2
CMTM3-208ENST00000564247 NBPF4Q96M43 638 aa22.57■■□□□ 1.2
CMTM3-208ENST00000564247 SRCAPQ6ZRS2 3230 aa22.56■■□□□ 1.2
CMTM3-208ENST00000564247 RREB1Q92766 1687 aa22.56■■□□□ 1.2
CMTM3-208ENST00000564247 RGPD3A6NKT7 1758 aaPredicted RBP22.55■■□□□ 1.2
CMTM3-208ENST00000564247 RGPD4Q7Z3J3 1758 aa22.55■■□□□ 1.2
CMTM3-208ENST00000564247 U2SURPO15042 1029 aaKnown RBP22.55■■□□□ 1.2
CMTM3-208ENST00000564247 IL13P35225 146 aa22.54■■□□□ 1.2
CMTM3-208ENST00000564247 MEGF6O75095 1541 aa22.53■■□□□ 1.2
CMTM3-208ENST00000564247 U2AF1L5P0DN76 240 aaPredicted RBP22.53■■□□□ 1.2
CMTM3-208ENST00000564247 U2AF1Q01081 240 aaKnown RBP eCLIP22.53■■□□□ 1.2
CMTM3-208ENST00000564247 EIF4A2Q14240 407 aaKnown RBP22.53■■□□□ 1.2
CMTM3-208ENST00000564247 NHSQ6T4R5 1651 aa22.52■■□□□ 1.2
CMTM3-208ENST00000564247 PLSCR1O15162 318 aa22.52■■□□□ 1.2
CMTM3-208ENST00000564247 PTF1AQ7RTS3 328 aa22.52■■□□□ 1.2
CMTM3-208ENST00000564247 COL3A1P02461 1466 aaPredicted RBP22.52■■□□□ 1.2
CMTM3-208ENST00000564247 NUP188Q5SRE5 1749 aa22.51■■□□□ 1.19
CMTM3-208ENST00000564247 SHANK3Q9BYB0 1731 aa22.51■■□□□ 1.19
CMTM3-208ENST00000564247 USHBP1Q8N6Y0 703 aa22.51■■□□□ 1.19
CMTM3-208ENST00000564247 PNNQ9H307 717 aaKnown RBP22.51■■□□□ 1.19
CMTM3-208ENST00000564247 ADAMTS8Q9UP79 889 aa22.51■■□□□ 1.19
CMTM3-208ENST00000564247 ZCRB1Q8TBF4 217 aaKnown RBP22.49■■□□□ 1.19
CMTM3-208ENST00000564247 RAPGEF4Q8WZA2 1011 aa22.49■■□□□ 1.19
CMTM3-208ENST00000564247 KAT6BQ8WYB5 2073 aa22.49■■□□□ 1.19
CMTM3-208ENST00000564247 NCAPD2Q15021 1401 aa22.48■■□□□ 1.19
CMTM3-208ENST00000564247 DDX54Q8TDD1 881 aaKnown RBP22.48■■□□□ 1.19
CMTM3-208ENST00000564247 KCNQ2O43526 872 aa22.47■■□□□ 1.19
CMTM3-208ENST00000564247 TATP17735 454 aaPredicted RBP22.46■■□□□ 1.19
CMTM3-208ENST00000564247 ACSBG1Q96GR2 724 aa22.46■■□□□ 1.19
CMTM3-208ENST00000564247 PSDA5PKW4 1024 aaPredicted RBP22.45■■□□□ 1.18
CMTM3-208ENST00000564247 FCHSD2O94868 740 aa22.45■■□□□ 1.18
CMTM3-208ENST00000564247 NEFMP07197 916 aa22.45■■□□□ 1.18
CMTM3-208ENST00000564247 EYA1Q99502 592 aa22.45■■□□□ 1.18
CMTM3-208ENST00000564247 BTAF1O14981 1849 aa22.44■■□□□ 1.18
CMTM3-208ENST00000564247 R3HDM1Q15032 1099 aaKnown RBP22.43■■□□□ 1.18
CMTM3-208ENST00000564247 NBPF14Q5TI25 921 aa22.43■■□□□ 1.18
CMTM3-208ENST00000564247 SULT6B1Q6IMI4 303 aa22.43■■□□□ 1.18
CMTM3-208ENST00000564247 HMOX1P09601 288 aa22.42■■□□□ 1.18
CMTM3-208ENST00000564247 PKD1L3Q7Z443 1732 aa22.42■■□□□ 1.18
CMTM3-208ENST00000564247 IGSF1Q8N6C5 1336 aa22.41■■□□□ 1.18
CMTM3-208ENST00000564247 DOT1LQ8TEK3 1739 aa22.41■■□□□ 1.18
CMTM3-208ENST00000564247 PROM2Q8N271 834 aa22.41■■□□□ 1.18
CMTM3-208ENST00000564247 RUNDC1Q96C34 613 aa22.41■■□□□ 1.18
CMTM3-208ENST00000564247 PCDH11XQ9BZA7 1347 aa22.4■■□□□ 1.18
CMTM3-208ENST00000564247 PCDH11YQ9BZA8 1340 aa22.4■■□□□ 1.18
CMTM3-208ENST00000564247 TXNRD1Q16881 649 aa22.39■■□□□ 1.17
CMTM3-208ENST00000564247 MAPK8IP3Q9UPT6 1336 aa22.38■■□□□ 1.17
CMTM3-208ENST00000564247 CCDC146Q8IYE0 955 aa22.38■■□□□ 1.17
CMTM3-208ENST00000564247 YTHDC1Q96MU7 727 aaKnown RBP22.38■■□□□ 1.17
CMTM3-208ENST00000564247 RSPH6AQ9H0K4 717 aa22.38■■□□□ 1.17
CMTM3-208ENST00000564247 PRKAR2BP31323 418 aa22.37■■□□□ 1.17
CMTM3-208ENST00000564247 PLEKHG2Q9H7P9 1386 aa22.37■■□□□ 1.17
CMTM3-208ENST00000564247 LRP5O75197 1615 aa22.36■■□□□ 1.17
CMTM3-208ENST00000564247 PRIM1P49642 420 aaKnown RBP22.36■■□□□ 1.17
CMTM3-208ENST00000564247 AEBP1Q8IUX7 1158 aa22.36■■□□□ 1.17
CMTM3-208ENST00000564247 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.36■■□□□ 1.17
CMTM3-208ENST00000564247 CYP27B1O15528 508 aa22.35■■□□□ 1.17
CMTM3-208ENST00000564247 HNRNPUQ00839 825 aaKnown RBP eCLIP22.35■■□□□ 1.17
CMTM3-208ENST00000564247 SPG7Q9UQ90 795 aa22.35■■□□□ 1.17
CMTM3-208ENST00000564247 SYTL4Q96C24 671 aaPredicted RBP22.34■■□□□ 1.17
CMTM3-208ENST00000564247 PLEKHF1Q96S99 279 aa22.34■■□□□ 1.17
CMTM3-208ENST00000564247 KDRP35968 1356 aa22.34■■□□□ 1.17
CMTM3-208ENST00000564247 ANO8Q9HCE9 1232 aaPredicted RBP22.32■■□□□ 1.16
CMTM3-208ENST00000564247 APAF1O14727 1248 aa22.31■■□□□ 1.16
CMTM3-208ENST00000564247 NKX1-1Q15270 411 aaPredicted RBP22.31■■□□□ 1.16
CMTM3-208ENST00000564247 NGEFQ8N5V2 710 aa22.31■■□□□ 1.16
CMTM3-208ENST00000564247 LY75O60449 1722 aa22.3■■□□□ 1.16
CMTM3-208ENST00000564247 TOGARAM1Q9Y4F4 1720 aa22.3■■□□□ 1.16
CMTM3-208ENST00000564247 ITGB4P16144 1822 aa22.29■■□□□ 1.16
CMTM3-208ENST00000564247 PAPPAQ13219 1627 aa22.29■■□□□ 1.16
CMTM3-208ENST00000564247 PLEKHO1Q53GL0 409 aaPredicted RBP22.28■■□□□ 1.16
CMTM3-208ENST00000564247 PHACTR3Q96KR7 559 aa22.28■■□□□ 1.16
CMTM3-208ENST00000564247 STK32BQ9NY57 414 aa22.28■■□□□ 1.16
CMTM3-208ENST00000564247 AMOTQ4VCS5 1084 aa22.27■■□□□ 1.16
CMTM3-208ENST00000564247 SLC27A3Q5K4L6 730 aa22.27■■□□□ 1.16
CMTM3-208ENST00000564247 IFNL2Q8IZJ0 200 aa22.27■■□□□ 1.16
CMTM3-208ENST00000564247 CASZ1Q86V15 1759 aa22.26■■□□□ 1.15
CMTM3-208ENST00000564247 PHKG2P15735 406 aa22.26■■□□□ 1.15
CMTM3-208ENST00000564247 TMPOP42166 694 aaKnown RBP22.26■■□□□ 1.15
CMTM3-208ENST00000564247 NFE2L2Q16236 605 aa22.26■■□□□ 1.15
CMTM3-208ENST00000564247 SLC15A2Q16348 729 aa22.26■■□□□ 1.15
CMTM3-208ENST00000564247 GAS2L2Q8NHY3 880 aa22.26■■□□□ 1.15
CMTM3-208ENST00000564247 LRRC4BQ9NT99 713 aa22.26■■□□□ 1.15
CMTM3-208ENST00000564247 SALL2Q9Y467 1007 aaPredicted RBP22.26■■□□□ 1.15
CMTM3-208ENST00000564247 NEUROD2Q15784 382 aa22.25■■□□□ 1.15
CMTM3-208ENST00000564247 NCBP3Q53F19 620 aaKnown RBP22.25■■□□□ 1.15
CMTM3-208ENST00000564247 SENP3-EIF4A1A0A087X0R7 540 aa22.24■■□□□ 1.15
CMTM3-208ENST00000564247 RIPK4P57078 832 aa22.24■■□□□ 1.15
CMTM3-208ENST00000564247 MPRIPQ6WCQ1 1025 aa22.24■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms