RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 SLC27A3Q5K4L6 730 aa23.87■■□□□ 1.41
VPS9D1-203ENST00000563798 LRRC4BQ9NT99 713 aa23.87■■□□□ 1.41
VPS9D1-203ENST00000563798 PPP1R1BQ9UD71 204 aaPredicted RBP23.87■■□□□ 1.41
VPS9D1-203ENST00000563798 EIF4G2P78344 907 aaKnown RBP eCLIP23.86■■□□□ 1.41
VPS9D1-203ENST00000563798 RAPGEF4Q8WZA2 1011 aa23.86■■□□□ 1.41
VPS9D1-203ENST00000563798 PTGER2P43116 358 aa23.85■■□□□ 1.41
VPS9D1-203ENST00000563798 PRIM1P49642 420 aaKnown RBP23.85■■□□□ 1.41
VPS9D1-203ENST00000563798 NSD2O96028 1365 aa23.85■■□□□ 1.41
VPS9D1-203ENST00000563798 NCAPD2Q15021 1401 aa23.84■■□□□ 1.41
VPS9D1-203ENST00000563798 ANKRD26Q9UPS8 1709 aa23.84■■□□□ 1.41
VPS9D1-203ENST00000563798 USHBP1Q8N6Y0 703 aa23.84■■□□□ 1.41
VPS9D1-203ENST00000563798 EMILIN1Q9Y6C2 1016 aa23.84■■□□□ 1.41
VPS9D1-203ENST00000563798 ZBTB7AO95365 584 aa23.83■■□□□ 1.41
VPS9D1-203ENST00000563798 TATP17735 454 aaPredicted RBP23.83■■□□□ 1.41
VPS9D1-203ENST00000563798 MTFR1LQ9H019 292 aa23.83■■□□□ 1.41
VPS9D1-203ENST00000563798 WASHC2AQ641Q2 1341 aa23.83■■□□□ 1.4
VPS9D1-203ENST00000563798 DOT1LQ8TEK3 1739 aa23.82■■□□□ 1.4
VPS9D1-203ENST00000563798 HSPA5P11021 654 aaKnown RBP23.82■■□□□ 1.4
VPS9D1-203ENST00000563798 CCER1Q8TC90 406 aaPredicted RBP23.82■■□□□ 1.4
VPS9D1-203ENST00000563798 AKT1S1Q96B36 256 aa23.82■■□□□ 1.4
VPS9D1-203ENST00000563798 KAT6BQ8WYB5 2073 aa23.81■■□□□ 1.4
VPS9D1-203ENST00000563798 ZNF827Q17R98 1081 aa23.81■■□□□ 1.4
VPS9D1-203ENST00000563798 SGIP1Q9BQI5 828 aa23.81■■□□□ 1.4
VPS9D1-203ENST00000563798 PCDH11XQ9BZA7 1347 aa23.8■■□□□ 1.4
VPS9D1-203ENST00000563798 PCDH11YQ9BZA8 1340 aa23.8■■□□□ 1.4
VPS9D1-203ENST00000563798 SYTL4Q96C24 671 aaPredicted RBP23.79■■□□□ 1.4
VPS9D1-203ENST00000563798 ATF5Q9Y2D1 282 aaPredicted RBP23.79■■□□□ 1.4
VPS9D1-203ENST00000563798 LY75O60449 1722 aa23.79■■□□□ 1.4
VPS9D1-203ENST00000563798 POLKQ9UBT6 870 aa23.78■■□□□ 1.4
VPS9D1-203ENST00000563798 QSER1Q2KHR3 1735 aa23.76■■□□□ 1.39
VPS9D1-203ENST00000563798 CYP27B1O15528 508 aa23.75■■□□□ 1.39
VPS9D1-203ENST00000563798 SLC16A10Q8TF71 515 aa23.75■■□□□ 1.39
VPS9D1-203ENST00000563798 PKD1L3Q7Z443 1732 aa23.75■■□□□ 1.39
VPS9D1-203ENST00000563798 MAP2P11137 1827 aaKnown RBP23.75■■□□□ 1.39
VPS9D1-203ENST00000563798 PPM1GO15355 546 aaPredicted RBP23.73■■□□□ 1.39
VPS9D1-203ENST00000563798 NKX1-1Q15270 411 aaPredicted RBP23.73■■□□□ 1.39
VPS9D1-203ENST00000563798 EYA1Q99502 592 aa23.73■■□□□ 1.39
VPS9D1-203ENST00000563798 POLR3GLQ9BT43 218 aa23.73■■□□□ 1.39
VPS9D1-203ENST00000563798 PANK3Q9H999 370 aa23.73■■□□□ 1.39
VPS9D1-203ENST00000563798 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.73■■□□□ 1.39
VPS9D1-203ENST00000563798 PLEKHG2Q9H7P9 1386 aa23.72■■□□□ 1.39
VPS9D1-203ENST00000563798 PNPLA7Q6ZV29 1317 aa23.71■■□□□ 1.39
VPS9D1-203ENST00000563798 CCNL1Q9UK58 526 aaPredicted RBP23.71■■□□□ 1.39
VPS9D1-203ENST00000563798 MAP3K5Q99683 1374 aa23.7■■□□□ 1.38
VPS9D1-203ENST00000563798 DCAF8L1A6NGE4 600 aa23.7■■□□□ 1.38
VPS9D1-203ENST00000563798 HMGB2P26583 209 aaKnown RBP23.7■■□□□ 1.38
VPS9D1-203ENST00000563798 SYT17Q9BSW7 474 aa23.7■■□□□ 1.38
VPS9D1-203ENST00000563798 COL24A1Q17RW2 1714 aa23.7■■□□□ 1.38
VPS9D1-203ENST00000563798 KCNQ4P56696 695 aa23.69■■□□□ 1.38
VPS9D1-203ENST00000563798 FHDC1Q9C0D6 1143 aaPredicted RBP23.69■■□□□ 1.38
VPS9D1-203ENST00000563798 SPG7Q9UQ90 795 aa23.69■■□□□ 1.38
VPS9D1-203ENST00000563798 ARXQ96QS3 562 aa23.68■■□□□ 1.38
VPS9D1-203ENST00000563798 TFCP2L1Q9NZI6 479 aa23.68■■□□□ 1.38
VPS9D1-203ENST00000563798 EIF4A2Q14240 407 aaKnown RBP23.67■■□□□ 1.38
VPS9D1-203ENST00000563798 TOGARAM1Q9Y4F4 1720 aa23.66■■□□□ 1.38
VPS9D1-203ENST00000563798 TUBGCP6Q96RT7 1819 aa23.65■■□□□ 1.38
VPS9D1-203ENST00000563798 PALLDQ8WX93 1383 aa23.65■■□□□ 1.38
VPS9D1-203ENST00000563798 TNNT2P45379 298 aaPredicted RBP23.64■■□□□ 1.37
VPS9D1-203ENST00000563798 MPRIPQ6WCQ1 1025 aa23.64■■□□□ 1.37
VPS9D1-203ENST00000563798 SMARCC1Q92922 1105 aaPredicted RBP23.64■■□□□ 1.37
VPS9D1-203ENST00000563798 IGSF1Q8N6C5 1336 aa23.63■■□□□ 1.37
VPS9D1-203ENST00000563798 ITGB4P16144 1822 aa23.63■■□□□ 1.37
VPS9D1-203ENST00000563798 PIGBQ92521 554 aa23.62■■□□□ 1.37
VPS9D1-203ENST00000563798 PHKG2P15735 406 aa23.61■■□□□ 1.37
VPS9D1-203ENST00000563798 YY1P25490 414 aa23.61■■□□□ 1.37
VPS9D1-203ENST00000563798 IFNL2Q8IZJ0 200 aa23.61■■□□□ 1.37
VPS9D1-203ENST00000563798 C5P01031 1676 aa23.6■■□□□ 1.37
VPS9D1-203ENST00000563798 POLD1P28340 1107 aa23.6■■□□□ 1.37
VPS9D1-203ENST00000563798 MORC1Q86VD1 984 aa23.59■■□□□ 1.37
VPS9D1-203ENST00000563798 COL23A1Q86Y22 540 aaPredicted RBP23.59■■□□□ 1.37
VPS9D1-203ENST00000563798 KNSTRNQ9Y448 316 aa23.59■■□□□ 1.37
VPS9D1-203ENST00000563798 TAF1LQ8IZX4 1826 aa23.58■■□□□ 1.37
VPS9D1-203ENST00000563798 FLAD1Q8NFF5 587 aa23.57■■□□□ 1.36
VPS9D1-203ENST00000563798 KIF7Q2M1P5 1343 aa23.57■■□□□ 1.36
VPS9D1-203ENST00000563798 AMER1Q5JTC6 1135 aaPredicted RBP23.56■■□□□ 1.36
VPS9D1-203ENST00000563798 TMOD3Q9NYL9 352 aa23.55■■□□□ 1.36
VPS9D1-203ENST00000563798 C4BP0C0L5 1744 aa23.53■■□□□ 1.36
VPS9D1-203ENST00000563798 LOC102724428A0A0B4J2F2 783 aa23.52■■□□□ 1.36
VPS9D1-203ENST00000563798 HSP90AB1P08238 724 aaKnown RBP23.52■■□□□ 1.36
VPS9D1-203ENST00000563798 SIK1P57059 783 aa23.52■■□□□ 1.36
VPS9D1-203ENST00000563798 AMOTQ4VCS5 1084 aa23.52■■□□□ 1.36
VPS9D1-203ENST00000563798 PLEKHO1Q53GL0 409 aaPredicted RBP23.52■■□□□ 1.36
VPS9D1-203ENST00000563798 ERVV-2B6SEH9 535 aa23.51■■□□□ 1.35
VPS9D1-203ENST00000563798 PER1O15534 1290 aaPredicted RBP23.51■■□□□ 1.35
VPS9D1-203ENST00000563798 DCAF5Q96JK2 942 aa23.51■■□□□ 1.35
VPS9D1-203ENST00000563798 KDRP35968 1356 aa23.51■■□□□ 1.35
VPS9D1-203ENST00000563798 ASAP1Q9ULH1 1129 aa23.5■■□□□ 1.35
VPS9D1-203ENST00000563798 MSH5O43196 834 aa23.49■■□□□ 1.35
VPS9D1-203ENST00000563798 IL13P35225 146 aa23.49■■□□□ 1.35
VPS9D1-203ENST00000563798 AK7Q96M32 723 aa23.49■■□□□ 1.35
VPS9D1-203ENST00000563798 ATG3Q9NT62 314 aa23.49■■□□□ 1.35
VPS9D1-203ENST00000563798 AMIGO3Q86WK7 504 aa23.47■■□□□ 1.35
VPS9D1-203ENST00000563798 AEBP1Q8IUX7 1158 aa23.47■■□□□ 1.35
VPS9D1-203ENST00000563798 LINC00116Q8NCU8 138 aa23.47■■□□□ 1.35
VPS9D1-203ENST00000563798 UBR3Q6ZT12 1888 aa23.47■■□□□ 1.35
VPS9D1-203ENST00000563798 SSFA2P28290 1259 aa23.46■■□□□ 1.35
VPS9D1-203ENST00000563798 ITPK1Q13572 414 aa23.46■■□□□ 1.35
VPS9D1-203ENST00000563798 ZNF831Q5JPB2 1677 aa23.46■■□□□ 1.35
VPS9D1-203ENST00000563798 UTRNP46939 3433 aa23.45■■□□□ 1.34
VPS9D1-203ENST00000563798 KDM6AO15550 1401 aaPredicted RBP23.45■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms