RNA–Protein interactions for RNA: ENST00000563683.5

RNF40-204, Transcript of ring finger protein 40, humanhuman

TSL 5 BASIC

Gene RNF40, Length 4,063 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-204ENST00000563683 YTHDC2Q9H6S0 1430 aaKnown RBP12.67□□□□□ -0.38
RNF40-204ENST00000563683 CHD1O14646 1710 aa12.67□□□□□ -0.38
RNF40-204ENST00000563683 LRRCC1Q9C099 1032 aa12.67□□□□□ -0.38
RNF40-204ENST00000563683 CDC42BPBQ9Y5S2 1711 aa12.67□□□□□ -0.38
RNF40-204ENST00000563683 CAVIN1Q6NZI2 390 aaKnown RBP12.67□□□□□ -0.38
RNF40-204ENST00000563683 MCM5P33992 734 aa12.67□□□□□ -0.38
RNF40-204ENST00000563683 ZNF445P59923 1031 aa12.67□□□□□ -0.38
RNF40-204ENST00000563683 RBM10P98175 930 aaKnown RBP12.67□□□□□ -0.38
RNF40-204ENST00000563683 NEXNQ0ZGT2 675 aa12.67□□□□□ -0.38
RNF40-204ENST00000563683 MRPL50Q8N5N7 158 aaKnown RBP12.67□□□□□ -0.38
RNF40-204ENST00000563683 NOL7Q9UMY1 257 aaKnown RBP12.67□□□□□ -0.38
RNF40-204ENST00000563683 ERC2O15083 957 aa12.66□□□□□ -0.38
RNF40-204ENST00000563683 ZNF500O60304 480 aaPredicted RBP12.66□□□□□ -0.38
RNF40-204ENST00000563683 PRPF40AO75400 957 aaKnown RBP12.66□□□□□ -0.38
RNF40-204ENST00000563683 PPIP5K1Q6PFW1 1433 aa12.66□□□□□ -0.38
RNF40-204ENST00000563683 SPHKAPQ2M3C7 1700 aa12.66□□□□□ -0.38
RNF40-204ENST00000563683 TSHZ3Q63HK5 1081 aa12.66□□□□□ -0.38
RNF40-204ENST00000563683 C16orf71Q8IYS4 520 aaPredicted RBP12.66□□□□□ -0.38
RNF40-204ENST00000563683 EIF4A2Q14240 407 aaKnown RBP12.66□□□□□ -0.38
RNF40-204ENST00000563683 GORABQ5T7V8 394 aa12.66□□□□□ -0.38
RNF40-204ENST00000563683 ZNF530Q6P9A1 599 aaPredicted RBP12.66□□□□□ -0.38
RNF40-204ENST00000563683 GNAT3A8MTJ3 354 aa12.65□□□□□ -0.38
RNF40-204ENST00000563683 BAG4O95429 457 aaKnown RBP12.65□□□□□ -0.38
RNF40-204ENST00000563683 G3BP1Q13283 466 aaKnown RBP eCLIP12.65□□□□□ -0.383e-7■■□□□ 13.3
RNF40-204ENST00000563683 MEIS3Q99687 375 aa12.65□□□□□ -0.38
RNF40-204ENST00000563683 RBM42Q9BTD8 480 aaKnown RBP12.65□□□□□ -0.38
RNF40-204ENST00000563683 TRPM2O94759 1503 aa12.65□□□□□ -0.38
RNF40-204ENST00000563683 HSP90B1P14625 803 aaKnown RBP12.65□□□□□ -0.38
RNF40-204ENST00000563683 SSFA2P28290 1259 aa12.65□□□□□ -0.38
RNF40-204ENST00000563683 RAPGEF4Q8WZA2 1011 aa12.65□□□□□ -0.38
RNF40-204ENST00000563683 TTC21BQ7Z4L5 1316 aa12.65□□□□□ -0.38
RNF40-204ENST00000563683 CEP152O94986 1710 aa12.65□□□□□ -0.38
RNF40-204ENST00000563683 FOXO3O43524 673 aa12.65□□□□□ -0.38
RNF40-204ENST00000563683 RIC3Q7Z5B4 369 aa12.65□□□□□ -0.38
RNF40-204ENST00000563683 TTC5Q8N0Z6 440 aa12.65□□□□□ -0.38
RNF40-204ENST00000563683 SRCIN1Q9C0H9 1055 aa12.65□□□□□ -0.38
RNF40-204ENST00000563683 RIMS2Q9UQ26 1411 aa12.65□□□□□ -0.39
RNF40-204ENST00000563683 DYNC1I1O14576 645 aa12.64□□□□□ -0.39
RNF40-204ENST00000563683 SRGAP3O43295 1099 aa12.64□□□□□ -0.39
RNF40-204ENST00000563683 CLASRPQ8N2M8 674 aaKnown RBP12.64□□□□□ -0.39
RNF40-204ENST00000563683 KIAA1210Q9ULL0 1709 aa12.64□□□□□ -0.39
RNF40-204ENST00000563683 SBNO2Q9Y2G9 1366 aa12.64□□□□□ -0.39
RNF40-204ENST00000563683 UQCRHLA0A096LP55 91 aa12.64□□□□□ -0.39
RNF40-204ENST00000563683 UQCRHP07919 91 aa12.64□□□□□ -0.39
RNF40-204ENST00000563683 RNF214Q8ND24 703 aa12.64□□□□□ -0.39
RNF40-204ENST00000563683 RUFY2Q8WXA3 655 aa12.64□□□□□ -0.39
RNF40-204ENST00000563683 ARID3AQ99856 593 aa12.64□□□□□ -0.39
RNF40-204ENST00000563683 ZCCHC11Q5TAX3 1644 aaKnown RBP12.64□□□□□ -0.39
RNF40-204ENST00000563683 DDX58O95786 925 aaKnown RBP12.63□□□□□ -0.39
RNF40-204ENST00000563683 DRC7Q8IY82 874 aa12.63□□□□□ -0.39
RNF40-204ENST00000563683 ZKSCAN1P17029 563 aaPredicted RBP12.63□□□□□ -0.39
RNF40-204ENST00000563683 NUTM1Q86Y26 1132 aa12.63□□□□□ -0.39
RNF40-204ENST00000563683 ARHGAP45Q92619 1136 aa12.63□□□□□ -0.39
RNF40-204ENST00000563683 PPP6R1Q9UPN7 881 aa12.63□□□□□ -0.39
RNF40-204ENST00000563683 UHRF1BP1LA0JNW5 1464 aa12.63□□□□□ -0.39
RNF40-204ENST00000563683 POGZQ7Z3K3 1410 aa12.63□□□□□ -0.39
RNF40-204ENST00000563683 SMAP1Q8IYB5 467 aaPredicted RBP12.63□□□□□ -0.39
RNF40-204ENST00000563683 PLEKHO1Q53GL0 409 aaPredicted RBP12.62□□□□□ -0.39
RNF40-204ENST00000563683 ZBTB7BO15156 539 aaPredicted RBP12.62□□□□□ -0.39
RNF40-204ENST00000563683 TAF7LQ5H9L4 462 aa12.62□□□□□ -0.39
RNF40-204ENST00000563683 UPF3BQ9BZI7 483 aaKnown RBP12.62□□□□□ -0.39
RNF40-204ENST00000563683 VPS37CA5D8V6 355 aaPredicted RBP12.62□□□□□ -0.39
RNF40-204ENST00000563683 HSP90AB4PQ58FF6 505 aa12.62□□□□□ -0.39
RNF40-204ENST00000563683 PODXL2Q9NZ53 605 aa12.62□□□□□ -0.39
RNF40-204ENST00000563683 CCDC39Q9UFE4 941 aa12.62□□□□□ -0.39
RNF40-204ENST00000563683 FLIIQ13045 1269 aa12.61□□□□□ -0.39
RNF40-204ENST00000563683 ZSCAN23Q3MJ62 389 aa12.61□□□□□ -0.39
RNF40-204ENST00000563683 ZKSCAN5Q9Y2L8 839 aa12.61□□□□□ -0.39
RNF40-204ENST00000563683 YEATS2Q9ULM3 1422 aa12.61□□□□□ -0.39
RNF40-204ENST00000563683 SHPRHQ149N8 1683 aa12.61□□□□□ -0.39
RNF40-204ENST00000563683 IL13P35225 146 aa12.61□□□□□ -0.39
RNF40-204ENST00000563683 ZC3H6P61129 1189 aaKnown RBP12.61□□□□□ -0.39
RNF40-204ENST00000563683 KIF2CQ99661 725 aa12.61□□□□□ -0.39
RNF40-204ENST00000563683 SIL1Q9H173 461 aa12.61□□□□□ -0.39
RNF40-204ENST00000563683 SHROOM2Q13796 1616 aa12.61□□□□□ -0.39
RNF40-204ENST00000563683 ANXA1P04083 346 aa12.61□□□□□ -0.39
RNF40-204ENST00000563683 TAF7Q15545 349 aaPredicted RBP12.61□□□□□ -0.39
RNF40-204ENST00000563683 SMC3Q9UQE7 1217 aa12.61□□□□□ -0.39
RNF40-204ENST00000563683 LRRFIP2Q9Y608 721 aaKnown RBP12.61□□□□□ -0.39
RNF40-204ENST00000563683 SASS6Q6UVJ0 657 aa12.6□□□□□ -0.39
RNF40-204ENST00000563683 PROSER2Q86WR7 435 aaPredicted RBP12.6□□□□□ -0.39
RNF40-204ENST00000563683 CNTROBQ8N137 903 aa12.6□□□□□ -0.39
RNF40-204ENST00000563683 PDLIM2Q96JY6 352 aa12.6□□□□□ -0.39
RNF40-204ENST00000563683 CWC22Q9HCG8 908 aaKnown RBP12.6□□□□□ -0.39
RNF40-204ENST00000563683 BTBD11A6QL63 1104 aa12.6□□□□□ -0.39
RNF40-204ENST00000563683 KIAA2012Q0VF49 1180 aa12.6□□□□□ -0.39
RNF40-204ENST00000563683 PRDM4Q9UKN5 801 aa12.6□□□□□ -0.39
RNF40-204ENST00000563683 ARHGAP31Q2M1Z3 1444 aa12.6□□□□□ -0.39
RNF40-204ENST00000563683 ZFYVE16Q7Z3T8 1539 aa12.6□□□□□ -0.39
RNF40-204ENST00000563683 MYL6BP14649 208 aa12.59□□□□□ -0.39
RNF40-204ENST00000563683 MPRIPQ6WCQ1 1025 aa12.59□□□□□ -0.39
RNF40-204ENST00000563683 MX1P20591 662 aa12.59□□□□□ -0.39
RNF40-204ENST00000563683 MTHFSDQ2M296 383 aaKnown RBP12.59□□□□□ -0.39
RNF40-204ENST00000563683 ANKLE2Q86XL3 938 aa12.59□□□□□ -0.39
RNF40-204ENST00000563683 PLEKHF1Q96S99 279 aa12.59□□□□□ -0.39
RNF40-204ENST00000563683 TNRQ92752 1358 aa12.59□□□□□ -0.39
RNF40-204ENST00000563683 SDSP20132 328 aa12.58□□□□□ -0.39
RNF40-204ENST00000563683 CWC27Q6UX04 472 aaKnown RBP12.58□□□□□ -0.39
RNF40-204ENST00000563683 CD2BP2O95400 341 aaKnown RBP12.58□□□□□ -0.4
RNF40-204ENST00000563683 PHF14O94880 888 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms