RNA–Protein interactions for RNA: ENST00000563396.1

SMPD3-204, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 3

Gene SMPD3, Length 608 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-204ENST00000563396 POLR3GLQ9BT43 218 aa19.42■□□□□ 0.7
SMPD3-204ENST00000563396 QSER1Q2KHR3 1735 aa19.41■□□□□ 0.7
SMPD3-204ENST00000563396 WASHC2AQ641Q2 1341 aa19.41■□□□□ 0.7
SMPD3-204ENST00000563396 PANK3Q9H999 370 aa19.4■□□□□ 0.7
SMPD3-204ENST00000563396 PLEKHG2Q9H7P9 1386 aa19.4■□□□□ 0.7
SMPD3-204ENST00000563396 KCNQ2O43526 872 aa19.39■□□□□ 0.69
SMPD3-204ENST00000563396 PROM2Q8N271 834 aa19.39■□□□□ 0.69
SMPD3-204ENST00000563396 KIF7Q2M1P5 1343 aa19.39■□□□□ 0.69
SMPD3-204ENST00000563396 NBPF14Q5TI25 921 aa19.38■□□□□ 0.69
SMPD3-204ENST00000563396 ANO8Q9HCE9 1232 aaPredicted RBP19.38■□□□□ 0.69
SMPD3-204ENST00000563396 POLKQ9UBT6 870 aa19.38■□□□□ 0.69
SMPD3-204ENST00000563396 USHBP1Q8N6Y0 703 aa19.37■□□□□ 0.69
SMPD3-204ENST00000563396 TXNRD1Q16881 649 aa19.36■□□□□ 0.69
SMPD3-204ENST00000563396 ZCRB1Q8TBF4 217 aaKnown RBP19.36■□□□□ 0.69
SMPD3-204ENST00000563396 ACSBG1Q96GR2 724 aa19.36■□□□□ 0.69
SMPD3-204ENST00000563396 ITGB4P16144 1822 aa19.36■□□□□ 0.69
SMPD3-204ENST00000563396 RAPGEF4Q8WZA2 1011 aa19.35■□□□□ 0.69
SMPD3-204ENST00000563396 KAT6BQ8WYB5 2073 aa19.35■□□□□ 0.69
SMPD3-204ENST00000563396 TUBGCP6Q96RT7 1819 aa19.35■□□□□ 0.69
SMPD3-204ENST00000563396 PCDH11XQ9BZA7 1347 aa19.34■□□□□ 0.69
SMPD3-204ENST00000563396 PCDH11YQ9BZA8 1340 aa19.34■□□□□ 0.69
SMPD3-204ENST00000563396 DDX54Q8TDD1 881 aaKnown RBP19.34■□□□□ 0.69
SMPD3-204ENST00000563396 TATP17735 454 aaPredicted RBP19.33■□□□□ 0.68
SMPD3-204ENST00000563396 AMER1Q5JTC6 1135 aaPredicted RBP19.31■□□□□ 0.68
SMPD3-204ENST00000563396 C5P01031 1676 aa19.3■□□□□ 0.68
SMPD3-204ENST00000563396 IGSF1Q8N6C5 1336 aa19.3■□□□□ 0.68
SMPD3-204ENST00000563396 PPM1GO15355 546 aaPredicted RBP19.3■□□□□ 0.68
SMPD3-204ENST00000563396 COL24A1Q17RW2 1714 aa19.3■□□□□ 0.68
SMPD3-204ENST00000563396 TAF1LQ8IZX4 1826 aa19.3■□□□□ 0.68
SMPD3-204ENST00000563396 EIF4A2Q14240 407 aaKnown RBP19.29■□□□□ 0.68
SMPD3-204ENST00000563396 EYA1Q99502 592 aa19.29■□□□□ 0.68
SMPD3-204ENST00000563396 KNSTRNQ9Y448 316 aa19.29■□□□□ 0.68
SMPD3-204ENST00000563396 CYP27B1O15528 508 aa19.27■□□□□ 0.68
SMPD3-204ENST00000563396 TNNT2P45379 298 aaPredicted RBP19.27■□□□□ 0.68
SMPD3-204ENST00000563396 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.27■□□□□ 0.68
SMPD3-204ENST00000563396 NPC1L1Q9UHC9 1359 aa19.27■□□□□ 0.68
SMPD3-204ENST00000563396 PER1O15534 1290 aaPredicted RBP19.26■□□□□ 0.67
SMPD3-204ENST00000563396 PRIM1P49642 420 aaKnown RBP19.26■□□□□ 0.67
SMPD3-204ENST00000563396 SLC15A2Q16348 729 aa19.26■□□□□ 0.67
SMPD3-204ENST00000563396 SLC27A3Q5K4L6 730 aa19.26■□□□□ 0.67
SMPD3-204ENST00000563396 MORC1Q86VD1 984 aa19.26■□□□□ 0.67
SMPD3-204ENST00000563396 STK32BQ9NY57 414 aa19.26■□□□□ 0.67
SMPD3-204ENST00000563396 LRRC4BQ9NT99 713 aa19.25■□□□□ 0.67
SMPD3-204ENST00000563396 KDRP35968 1356 aa19.24■□□□□ 0.67
SMPD3-204ENST00000563396 NKX1-1Q15270 411 aaPredicted RBP19.24■□□□□ 0.67
SMPD3-204ENST00000563396 SYTL4Q96C24 671 aaPredicted RBP19.23■□□□□ 0.67
SMPD3-204ENST00000563396 ZNF827Q17R98 1081 aa19.22■□□□□ 0.67
SMPD3-204ENST00000563396 SPON1Q9HCB6 807 aa19.22■□□□□ 0.67
SMPD3-204ENST00000563396 SPG7Q9UQ90 795 aa19.22■□□□□ 0.67
SMPD3-204ENST00000563396 ZNF831Q5JPB2 1677 aa19.21■□□□□ 0.67
SMPD3-204ENST00000563396 PDGFDQ9GZP0 370 aaPredicted RBP19.21■□□□□ 0.67
SMPD3-204ENST00000563396 COL3A1P02461 1466 aaPredicted RBP19.21■□□□□ 0.67
SMPD3-204ENST00000563396 AKT1S1Q96B36 256 aa19.2■□□□□ 0.66
SMPD3-204ENST00000563396 C4BP0C0L5 1744 aa19.2■□□□□ 0.66
SMPD3-204ENST00000563396 PALLDQ8WX93 1383 aa19.19■□□□□ 0.66
SMPD3-204ENST00000563396 VIRMAQ69YN4 1812 aaKnown RBP19.18■□□□□ 0.66
SMPD3-204ENST00000563396 PHKG2P15735 406 aa19.18■□□□□ 0.66
SMPD3-204ENST00000563396 SCN11AQ9UI33 1791 aa19.18■□□□□ 0.66
SMPD3-204ENST00000563396 CICQ96RK0 1608 aaPredicted RBP19.18■□□□□ 0.66
SMPD3-204ENST00000563396 UBR3Q6ZT12 1888 aa19.17■□□□□ 0.66
SMPD3-204ENST00000563396 ADAMTS7Q9UKP4 1686 aa19.17■□□□□ 0.66
SMPD3-204ENST00000563396 IL13P35225 146 aa19.16■□□□□ 0.66
SMPD3-204ENST00000563396 PTGER2P43116 358 aa19.16■□□□□ 0.66
SMPD3-204ENST00000563396 IFNL2Q8IZJ0 200 aa19.16■□□□□ 0.66
SMPD3-204ENST00000563396 MTFR1LQ9H019 292 aa19.16■□□□□ 0.66
SMPD3-204ENST00000563396 CCNL1Q9UK58 526 aaPredicted RBP19.16■□□□□ 0.66
SMPD3-204ENST00000563396 KDM6AO15550 1401 aaPredicted RBP19.16■□□□□ 0.66
SMPD3-204ENST00000563396 COL5A3P25940 1745 aaPredicted RBP19.15■□□□□ 0.66
SMPD3-204ENST00000563396 SGIP1Q9BQI5 828 aa19.15■□□□□ 0.66
SMPD3-204ENST00000563396 ZBTB7AO95365 584 aa19.14■□□□□ 0.65
SMPD3-204ENST00000563396 PNPLA7Q6ZV29 1317 aa19.14■□□□□ 0.65
SMPD3-204ENST00000563396 MPRIPQ6WCQ1 1025 aa19.13■□□□□ 0.65
SMPD3-204ENST00000563396 AEBP1Q8IUX7 1158 aa19.13■□□□□ 0.65
SMPD3-204ENST00000563396 MRC1P22897 1456 aa19.12■□□□□ 0.65
SMPD3-204ENST00000563396 MTHFSP49914 203 aa19.12■□□□□ 0.65
SMPD3-204ENST00000563396 KCNQ4P56696 695 aa19.12■□□□□ 0.65
SMPD3-204ENST00000563396 CC2D1BQ5T0F9 858 aaKnown RBP19.12■□□□□ 0.65
SMPD3-204ENST00000563396 PIGBQ92521 554 aa19.12■□□□□ 0.65
SMPD3-204ENST00000563396 SMARCC1Q92922 1105 aaPredicted RBP19.12■□□□□ 0.65
SMPD3-204ENST00000563396 AMOTQ4VCS5 1084 aa19.11■□□□□ 0.65
SMPD3-204ENST00000563396 PPP1R1BQ9UD71 204 aaPredicted RBP19.11■□□□□ 0.65
SMPD3-204ENST00000563396 MAP3K5Q99683 1374 aa19.1■□□□□ 0.65
SMPD3-204ENST00000563396 HSP90AB1P08238 724 aaKnown RBP19.1■□□□□ 0.65
SMPD3-204ENST00000563396 HMGB2P26583 209 aaKnown RBP19.1■□□□□ 0.65
SMPD3-204ENST00000563396 PLEKHO1Q53GL0 409 aaPredicted RBP19.1■□□□□ 0.65
SMPD3-204ENST00000563396 SLC16A10Q8TF71 515 aa19.1■□□□□ 0.65
SMPD3-204ENST00000563396 TMOD3Q9NYL9 352 aa19.1■□□□□ 0.65
SMPD3-204ENST00000563396 SULT6B1Q6IMI4 303 aa19.09■□□□□ 0.65
SMPD3-204ENST00000563396 DCAF5Q96JK2 942 aa19.09■□□□□ 0.65
SMPD3-204ENST00000563396 TJP1Q07157 1748 aa19.08■□□□□ 0.64
SMPD3-204ENST00000563396 ERVV-2B6SEH9 535 aa19.07■□□□□ 0.64
SMPD3-204ENST00000563396 ZNF530Q6P9A1 599 aaPredicted RBP19.07■□□□□ 0.64
SMPD3-204ENST00000563396 TFCP2L1Q9NZI6 479 aa19.07■□□□□ 0.64
SMPD3-204ENST00000563396 ATF5Q9Y2D1 282 aaPredicted RBP19.07■□□□□ 0.64
SMPD3-204ENST00000563396 SIPA1L3O60292 1781 aaPredicted RBP19.04■□□□□ 0.64
SMPD3-204ENST00000563396 UBR2Q8IWV8 1755 aa19.04■□□□□ 0.64
SMPD3-204ENST00000563396 LOC102724428A0A0B4J2F2 783 aa19.04■□□□□ 0.64
SMPD3-204ENST00000563396 DIAPH1O60610 1272 aaKnown RBP19.04■□□□□ 0.64
SMPD3-204ENST00000563396 SIK1P57059 783 aa19.04■□□□□ 0.64
SMPD3-204ENST00000563396 ASAP1Q9ULH1 1129 aa19.04■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms