RNA–Protein interactions for RNA: ENST00000563366.5

UBFD1-202, Transcript of ubiquitin family domain containing 1, humanhuman

TSL 3

Gene UBFD1, Length 709 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1-202ENST00000563366 TRPM3Q9HCF6 1732 aaPredicted RBP12.78□□□□□ -0.36
UBFD1-202ENST00000563366 MST1RQ04912 1400 aa12.78□□□□□ -0.36
UBFD1-202ENST00000563366 G3V3G9 751 aa12.77□□□□□ -0.37
UBFD1-202ENST00000563366 NEFMP07197 916 aa12.77□□□□□ -0.37
UBFD1-202ENST00000563366 MICALL2Q8IY33 904 aa12.77□□□□□ -0.37
UBFD1-202ENST00000563366 ARHGEF1Q92888 912 aaKnown RBP12.77□□□□□ -0.37
UBFD1-202ENST00000563366 PHRF1Q9P1Y6 1649 aaKnown RBP12.77□□□□□ -0.37
UBFD1-202ENST00000563366 LTN1O94822 1766 aa12.76□□□□□ -0.37
UBFD1-202ENST00000563366 U2AF1L5P0DN76 240 aaPredicted RBP12.76□□□□□ -0.37
UBFD1-202ENST00000563366 U2AF1Q01081 240 aaKnown RBP eCLIP12.76□□□□□ -0.37
UBFD1-202ENST00000563366 PSME1Q06323 249 aa12.76□□□□□ -0.37
UBFD1-202ENST00000563366 RBM33Q96EV2 1170 aaKnown RBP12.75□□□□□ -0.37
UBFD1-202ENST00000563366 ALS2Q96Q42 1657 aa12.74□□□□□ -0.37
UBFD1-202ENST00000563366 SBNO1A3KN83 1393 aa12.74□□□□□ -0.37
UBFD1-202ENST00000563366 RTL1A6NKG5 1358 aa12.74□□□□□ -0.37
UBFD1-202ENST00000563366 FLT4P35916 1363 aa12.74□□□□□ -0.37
UBFD1-202ENST00000563366 MAPK8IP3Q9UPT6 1336 aa12.74□□□□□ -0.37
UBFD1-202ENST00000563366 U2SURPO15042 1029 aaKnown RBP12.74□□□□□ -0.37
UBFD1-202ENST00000563366 PPM1GO15355 546 aaPredicted RBP12.74□□□□□ -0.37
UBFD1-202ENST00000563366 ABTB2Q8N961 1025 aa12.74□□□□□ -0.37
UBFD1-202ENST00000563366 BOLA1Q9Y3E2 137 aa12.74□□□□□ -0.37
UBFD1-202ENST00000563366 RGPD1P0DJD0 1748 aa12.74□□□□□ -0.37
UBFD1-202ENST00000563366 PEAK1Q9H792 1746 aa12.74□□□□□ -0.37
UBFD1-202ENST00000563366 FCHSD2O94868 740 aa12.73□□□□□ -0.37
UBFD1-202ENST00000563366 CCDC27Q2M243 656 aa12.73□□□□□ -0.37
UBFD1-202ENST00000563366 KCNH5Q8NCM2 988 aa12.73□□□□□ -0.37
UBFD1-202ENST00000563366 EMILIN1Q9Y6C2 1016 aa12.73□□□□□ -0.37
UBFD1-202ENST00000563366 SLIT3O75094 1523 aa12.72□□□□□ -0.37
UBFD1-202ENST00000563366 NPHP3Q7Z494 1330 aa12.72□□□□□ -0.37
UBFD1-202ENST00000563366 ZNF521Q96K83 1311 aa12.72□□□□□ -0.37
UBFD1-202ENST00000563366 APAF1O14727 1248 aa12.72□□□□□ -0.37
UBFD1-202ENST00000563366 SEC24BO95487 1268 aa12.72□□□□□ -0.37
UBFD1-202ENST00000563366 CCDC146Q8IYE0 955 aa12.72□□□□□ -0.37
UBFD1-202ENST00000563366 GPHNQ9NQX3 736 aaPredicted RBP12.72□□□□□ -0.37
UBFD1-202ENST00000563366 ORAI2Q96SN7 254 aa12.71□□□□□ -0.37
UBFD1-202ENST00000563366 ZNF335Q9H4Z2 1342 aaPredicted RBP12.7□□□□□ -0.38
UBFD1-202ENST00000563366 RRS1Q15050 365 aaKnown RBP12.7□□□□□ -0.38
UBFD1-202ENST00000563366 PPP1R15BQ5SWA1 713 aa12.7□□□□□ -0.38
UBFD1-202ENST00000563366 PELP1Q8IZL8 1130 aaKnown RBP12.7□□□□□ -0.38
UBFD1-202ENST00000563366 TCP11L2Q8N4U5 519 aa12.7□□□□□ -0.38
UBFD1-202ENST00000563366 SLC39A7Q92504 469 aa12.7□□□□□ -0.38
UBFD1-202ENST00000563366 SALL2Q9Y467 1007 aaPredicted RBP12.7□□□□□ -0.38
UBFD1-202ENST00000563366 NFAT5O94916 1531 aa12.7□□□□□ -0.38
UBFD1-202ENST00000563366 E9PSI1 815 aa12.69□□□□□ -0.38
UBFD1-202ENST00000563366 FOXO3O43524 673 aa12.69□□□□□ -0.38
UBFD1-202ENST00000563366 IL13P35225 146 aa12.69□□□□□ -0.38
UBFD1-202ENST00000563366 TMC2Q8TDI7 906 aa12.69□□□□□ -0.38
UBFD1-202ENST00000563366 L3MBTL3Q96JM7 780 aaPredicted RBP12.69□□□□□ -0.38
UBFD1-202ENST00000563366 ABCC6O95255 1503 aa12.68□□□□□ -0.38
UBFD1-202ENST00000563366 MAP3K19Q56UN5 1328 aa12.68□□□□□ -0.38
UBFD1-202ENST00000563366 AMPHP49418 695 aa12.68□□□□□ -0.38
UBFD1-202ENST00000563366 ERICH6BQ5W0A0 696 aa12.68□□□□□ -0.38
UBFD1-202ENST00000563366 KRT28Q7Z3Y7 464 aa12.68□□□□□ -0.38
UBFD1-202ENST00000563366 WDR63Q8IWG1 891 aa12.68□□□□□ -0.38
UBFD1-202ENST00000563366 PLEKHF1Q96S99 279 aa12.68□□□□□ -0.38
UBFD1-202ENST00000563366 TMEM121BQ9BXQ6 578 aaPredicted RBP12.68□□□□□ -0.38
UBFD1-202ENST00000563366 MED1Q15648 1581 aaPredicted RBP12.68□□□□□ -0.38
UBFD1-202ENST00000563366 ARHGEF10O15013 1369 aa12.68□□□□□ -0.38
UBFD1-202ENST00000563366 NHSL1Q5SYE7 1610 aa12.67□□□□□ -0.38
UBFD1-202ENST00000563366 CAMK2BQ13554 666 aa12.67□□□□□ -0.38
UBFD1-202ENST00000563366 WWC1Q8IX03 1113 aa12.67□□□□□ -0.38
UBFD1-202ENST00000563366 RSPH6AQ9H0K4 717 aa12.67□□□□□ -0.38
UBFD1-202ENST00000563366 SUPT16HQ9Y5B9 1047 aaKnown RBP12.67□□□□□ -0.38
UBFD1-202ENST00000563366 TNS3Q68CZ2 1445 aa12.67□□□□□ -0.38
UBFD1-202ENST00000563366 DLG5Q8TDM6 1919 aa12.66□□□□□ -0.38
UBFD1-202ENST00000563366 PXDNQ92626 1479 aa12.66□□□□□ -0.38
UBFD1-202ENST00000563366 USP19O94966 1318 aa12.66□□□□□ -0.38
UBFD1-202ENST00000563366 TULP1O00294 542 aaPredicted RBP12.66□□□□□ -0.38
UBFD1-202ENST00000563366 CRYBG1Q9Y4K1 1723 aa12.65□□□□□ -0.38
UBFD1-202ENST00000563366 FAM208AQ9UK61 1670 aaKnown RBP12.65□□□□□ -0.38
UBFD1-202ENST00000563366 FBLN1P23142 703 aa12.65□□□□□ -0.38
UBFD1-202ENST00000563366 CALD1Q05682 793 aaKnown RBP12.65□□□□□ -0.38
UBFD1-202ENST00000563366 SLFN5Q08AF3 891 aa12.65□□□□□ -0.38
UBFD1-202ENST00000563366 LMOD3Q0VAK6 560 aa12.65□□□□□ -0.38
UBFD1-202ENST00000563366 EIF4A2Q14240 407 aaKnown RBP12.65□□□□□ -0.38
UBFD1-202ENST00000563366 IL16Q14005 1332 aa12.64□□□□□ -0.39
UBFD1-202ENST00000563366 SENP3-EIF4A1A0A087X0R7 540 aa12.64□□□□□ -0.39
UBFD1-202ENST00000563366 C7P10643 843 aa12.64□□□□□ -0.39
UBFD1-202ENST00000563366 PRKAR2BP31323 418 aa12.64□□□□□ -0.39
UBFD1-202ENST00000563366 TMPOP42166 694 aaKnown RBP12.64□□□□□ -0.39
UBFD1-202ENST00000563366 SP7Q8TDD2 431 aaPredicted RBP12.64□□□□□ -0.39
UBFD1-202ENST00000563366 MYH16Q9H6N6 1097 aa12.64□□□□□ -0.39
UBFD1-202ENST00000563366 RCAN3Q9UKA8 241 aa12.64□□□□□ -0.39
UBFD1-202ENST00000563366 COLQQ9Y215 455 aaPredicted RBP12.64□□□□□ -0.39
UBFD1-202ENST00000563366 KDRP35968 1356 aa12.64□□□□□ -0.39
UBFD1-202ENST00000563366 RNF123Q5XPI4 1314 aa12.63□□□□□ -0.39
UBFD1-202ENST00000563366 HOXC9P31274 260 aa12.63□□□□□ -0.39
UBFD1-202ENST00000563366 DSG2Q14126 1118 aa12.63□□□□□ -0.39
UBFD1-202ENST00000563366 HSP90AB2PQ58FF8 381 aa12.63□□□□□ -0.39
UBFD1-202ENST00000563366 DUSP27Q5VZP5 1158 aa12.63□□□□□ -0.39
UBFD1-202ENST00000563366 TRMT2AQ8IZ69 625 aaKnown RBP12.63□□□□□ -0.39
UBFD1-202ENST00000563366 CDCA7LQ96GN5 454 aa12.63□□□□□ -0.39
UBFD1-202ENST00000563366 SLAIN2Q9P270 581 aa12.63□□□□□ -0.39
UBFD1-202ENST00000563366 ARIH1Q9Y4X5 557 aaPredicted RBP12.63□□□□□ -0.39
UBFD1-202ENST00000563366 IGSF1Q8N6C5 1336 aa12.62□□□□□ -0.39
UBFD1-202ENST00000563366 CAMTA1Q9Y6Y1 1673 aa12.62□□□□□ -0.39
UBFD1-202ENST00000563366 NEUROD2Q15784 382 aa12.62□□□□□ -0.39
UBFD1-202ENST00000563366 NFE2L2Q16236 605 aa12.62□□□□□ -0.39
UBFD1-202ENST00000563366 NUTM2GQ5VZR2 741 aa12.62□□□□□ -0.39
UBFD1-202ENST00000563366 LMOD2Q6P5Q4 547 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms