RNA–Protein interactions for RNA: ENST00000563343.5

HERPUD1-206, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 4

Gene HERPUD1, Length 567 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-206ENST00000563343 KCNQ4P56696 695 aa11.32□□□□□ -0.6
HERPUD1-206ENST00000563343 KIF3CO14782 793 aa11.31□□□□□ -0.6
HERPUD1-206ENST00000563343 IL2RBP14784 551 aa11.31□□□□□ -0.6
HERPUD1-206ENST00000563343 DNAJC5GQ8N7S2 189 aa11.31□□□□□ -0.6
HERPUD1-206ENST00000563343 UBR3Q6ZT12 1888 aa11.3□□□□□ -0.6
HERPUD1-206ENST00000563343 KIAA1551Q9HCM1 1747 aa11.3□□□□□ -0.6
HERPUD1-206ENST00000563343 SOX12O15370 315 aa11.3□□□□□ -0.6
HERPUD1-206ENST00000563343 COL23A1Q86Y22 540 aaPredicted RBP11.3□□□□□ -0.6
HERPUD1-206ENST00000563343 TFCP2L1Q9NZI6 479 aa11.3□□□□□ -0.6
HERPUD1-206ENST00000563343 TTC21AQ8NDW8 1320 aa11.3□□□□□ -0.6
HERPUD1-206ENST00000563343 ZNF526Q8TF50 670 aaPredicted RBP11.29□□□□□ -0.6
HERPUD1-206ENST00000563343 KIF13BQ9NQT8 1826 aa11.29□□□□□ -0.6
HERPUD1-206ENST00000563343 USP31Q70CQ4 1352 aa11.28□□□□□ -0.6
HERPUD1-206ENST00000563343 SLC4A2P04920 1241 aa11.28□□□□□ -0.6
HERPUD1-206ENST00000563343 ZNF692Q9BU19 519 aaPredicted RBP11.28□□□□□ -0.6
HERPUD1-206ENST00000563343 ANKRD36BQ8N2N9 1353 aa11.28□□□□□ -0.6
HERPUD1-206ENST00000563343 RNF39Q9H2S5 420 aa11.27□□□□□ -0.61
HERPUD1-206ENST00000563343 NLRP2Q9NX02 1062 aa11.27□□□□□ -0.61
HERPUD1-206ENST00000563343 CD2APQ9Y5K6 639 aa11.27□□□□□ -0.61
HERPUD1-206ENST00000563343 BRCA1P38398 1863 aaKnown RBP11.27□□□□□ -0.61
HERPUD1-206ENST00000563343 ITGB4P16144 1822 aa11.26□□□□□ -0.61
HERPUD1-206ENST00000563343 APLP1P51693 650 aa11.26□□□□□ -0.61
HERPUD1-206ENST00000563343 MSL1Q68DK7 614 aa11.26□□□□□ -0.61
HERPUD1-206ENST00000563343 C4BP0C0L5 1744 aa11.26□□□□□ -0.61
HERPUD1-206ENST00000563343 CD163L1Q9NR16 1453 aa11.25□□□□□ -0.61
HERPUD1-206ENST00000563343 PRIM1P49642 420 aaKnown RBP11.25□□□□□ -0.61
HERPUD1-206ENST00000563343 N4BP2Q86UW6 1770 aaPredicted RBP11.25□□□□□ -0.61
HERPUD1-206ENST00000563343 MAP2P11137 1827 aaKnown RBP11.24□□□□□ -0.61
HERPUD1-206ENST00000563343 COL13A1Q5TAT6 717 aaPredicted RBP11.24□□□□□ -0.61
HERPUD1-206ENST00000563343 ANKRD24Q8TF21 1146 aa11.24□□□□□ -0.61
HERPUD1-206ENST00000563343 KTN1Q86UP2 1357 aaKnown RBP11.24□□□□□ -0.61
HERPUD1-206ENST00000563343 DDX54Q8TDD1 881 aaKnown RBP11.23□□□□□ -0.61
HERPUD1-206ENST00000563343 CCNL1Q9UK58 526 aaPredicted RBP11.23□□□□□ -0.61
HERPUD1-206ENST00000563343 EVC2Q86UK5 1308 aa11.23□□□□□ -0.61
HERPUD1-206ENST00000563343 PKD1L3Q7Z443 1732 aa11.23□□□□□ -0.61
HERPUD1-206ENST00000563343 PCNTO95613 3336 aa11.22□□□□□ -0.61
HERPUD1-206ENST00000563343 MEGF6O75095 1541 aa11.22□□□□□ -0.61
HERPUD1-206ENST00000563343 IGSF1Q8N6C5 1336 aa11.22□□□□□ -0.61
HERPUD1-206ENST00000563343 SBNO2Q9Y2G9 1366 aa11.22□□□□□ -0.61
HERPUD1-206ENST00000563343 ARFGEF1Q9Y6D6 1849 aa11.21□□□□□ -0.61
HERPUD1-206ENST00000563343 JMYQ8N9B5 988 aa11.21□□□□□ -0.61
HERPUD1-206ENST00000563343 SYTL4Q96C24 671 aaPredicted RBP11.21□□□□□ -0.61
HERPUD1-206ENST00000563343 TOMM70O94826 608 aa11.2□□□□□ -0.62
HERPUD1-206ENST00000563343 AMIGO3Q86WK7 504 aa11.2□□□□□ -0.62
HERPUD1-206ENST00000563343 NME9Q86XW9 330 aa11.2□□□□□ -0.62
HERPUD1-206ENST00000563343 USP47Q96K76 1375 aa11.19□□□□□ -0.62
HERPUD1-206ENST00000563343 WWC3Q9ULE0 1092 aa11.19□□□□□ -0.62
HERPUD1-206ENST00000563343 SBF1O95248 1867 aa11.19□□□□□ -0.62
HERPUD1-206ENST00000563343 PRELPP51888 382 aa11.18□□□□□ -0.62
HERPUD1-206ENST00000563343 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.18□□□□□ -0.62
HERPUD1-206ENST00000563343 IP6K1Q92551 441 aa11.18□□□□□ -0.62
HERPUD1-206ENST00000563343 KLRG1Q96E93 195 aa11.18□□□□□ -0.62
HERPUD1-206ENST00000563343 PXDNLA1KZ92 1463 aa11.18□□□□□ -0.62
HERPUD1-206ENST00000563343 TNRC6CQ9HCJ0 1690 aaKnown RBP11.17□□□□□ -0.62
HERPUD1-206ENST00000563343 CAPN15O75808 1086 aa11.17□□□□□ -0.62
HERPUD1-206ENST00000563343 HTRA3P83110 453 aa11.17□□□□□ -0.62
HERPUD1-206ENST00000563343 FLAD1Q8NFF5 587 aa11.17□□□□□ -0.62
HERPUD1-206ENST00000563343 ZCRB1Q8TBF4 217 aaKnown RBP11.16□□□□□ -0.62
HERPUD1-206ENST00000563343 NMRK2Q9NPI5 230 aa11.16□□□□□ -0.62
HERPUD1-206ENST00000563343 EDC4Q6P2E9 1401 aaKnown RBP11.16□□□□□ -0.62
HERPUD1-206ENST00000563343 SMIM5Q71RC9 77 aa11.15□□□□□ -0.62
HERPUD1-206ENST00000563343 U3KPZ7 1027 aaPredicted RBP11.15□□□□□ -0.62
HERPUD1-206ENST00000563343 PALLDQ8WX93 1383 aa11.15□□□□□ -0.63
HERPUD1-206ENST00000563343 C1QBPQ07021 282 aaKnown RBP11.14□□□□□ -0.63
HERPUD1-206ENST00000563343 TNS4Q8IZW8 715 aa11.14□□□□□ -0.63
HERPUD1-206ENST00000563343 RBM46Q8TBY0 533 aaKnown RBP11.14□□□□□ -0.63
HERPUD1-206ENST00000563343 LTV1Q96GA3 475 aaPredicted RBP11.14□□□□□ -0.63
HERPUD1-206ENST00000563343 FOXD4L1Q9NU39 408 aa11.13□□□□□ -0.63
HERPUD1-206ENST00000563343 C4AP0C0L4 1744 aa11.12□□□□□ -0.63
HERPUD1-206ENST00000563343 C10orf71Q711Q0 1435 aa11.12□□□□□ -0.63
HERPUD1-206ENST00000563343 HOXC9P31274 260 aa11.12□□□□□ -0.63
HERPUD1-206ENST00000563343 A0A1W2PP64 1363 aa11.12□□□□□ -0.63
HERPUD1-206ENST00000563343 MAP3K19Q56UN5 1328 aa11.11□□□□□ -0.63
HERPUD1-206ENST00000563343 ZNF831Q5JPB2 1677 aa11.11□□□□□ -0.63
HERPUD1-206ENST00000563343 NSD3Q9BZ95 1437 aa11.11□□□□□ -0.63
HERPUD1-206ENST00000563343 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.11□□□□□ -0.63
HERPUD1-206ENST00000563343 COL5A3P25940 1745 aaPredicted RBP11.11□□□□□ -0.63
HERPUD1-206ENST00000563343 CCDC88AQ3V6T2 1871 aa11.1□□□□□ -0.63
HERPUD1-206ENST00000563343 KCPQ6ZWJ8 1503 aa11.1□□□□□ -0.63
HERPUD1-206ENST00000563343 FSTL1Q12841 308 aa11.1□□□□□ -0.63
HERPUD1-206ENST00000563343 NBPF6Q5VWK0 638 aa11.1□□□□□ -0.63
HERPUD1-206ENST00000563343 NBPF4Q96M43 638 aa11.1□□□□□ -0.63
HERPUD1-206ENST00000563343 SLC12A5Q9H2X9 1139 aa11.1□□□□□ -0.63
HERPUD1-206ENST00000563343 CGNL1Q0VF96 1302 aa11.09□□□□□ -0.63
HERPUD1-206ENST00000563343 PLEKHG2Q9H7P9 1386 aa11.09□□□□□ -0.63
HERPUD1-206ENST00000563343 PHF14O94880 888 aa11.09□□□□□ -0.63
HERPUD1-206ENST00000563343 SLC34A2O95436 690 aa11.09□□□□□ -0.63
HERPUD1-206ENST00000563343 FBLN1P23142 703 aa11.09□□□□□ -0.63
HERPUD1-206ENST00000563343 HMGB2P26583 209 aaKnown RBP11.09□□□□□ -0.63
HERPUD1-206ENST00000563343 SSFA2P28290 1259 aa11.09□□□□□ -0.63
HERPUD1-206ENST00000563343 L3MBTL2Q969R5 705 aa11.09□□□□□ -0.63
HERPUD1-206ENST00000563343 AK7Q96M32 723 aa11.09□□□□□ -0.63
HERPUD1-206ENST00000563343 RTL1A6NKG5 1358 aa11.08□□□□□ -0.64
HERPUD1-206ENST00000563343 ROCK2O75116 1388 aaKnown RBP11.08□□□□□ -0.64
HERPUD1-206ENST00000563343 TGFB2P61812 414 aa11.08□□□□□ -0.64
HERPUD1-206ENST00000563343 LINC00116Q8NCU8 138 aa11.08□□□□□ -0.64
HERPUD1-206ENST00000563343 MYH14Q7Z406 1995 aaKnown RBP11.08□□□□□ -0.64
HERPUD1-206ENST00000563343 CYP27B1O15528 508 aa11.07□□□□□ -0.64
HERPUD1-206ENST00000563343 MPRIPQ6WCQ1 1025 aa11.07□□□□□ -0.64
HERPUD1-206ENST00000563343 HDGFL2Q7Z4V5 671 aaPredicted RBP11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms