RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 PNPLA7Q6ZV29 1317 aa26.61■■□□□ 1.85
VPS35-202ENST00000561713 TMF1P82094 1093 aa26.6■■□□□ 1.85
VPS35-202ENST00000561713 HOXC9P31274 260 aa26.59■■□□□ 1.85
VPS35-202ENST00000561713 SLC16A10Q8TF71 515 aa26.59■■□□□ 1.85
VPS35-202ENST00000561713 COG3Q96JB2 828 aa26.59■■□□□ 1.85
VPS35-202ENST00000561713 DOT1LQ8TEK3 1739 aa26.59■■□□□ 1.85
VPS35-202ENST00000561713 GPR162Q16538 588 aa26.58■■□□□ 1.85
VPS35-202ENST00000561713 KLHL34Q8N239 644 aa26.58■■□□□ 1.85
VPS35-202ENST00000561713 TFCP2L1Q9NZI6 479 aa26.58■■□□□ 1.85
VPS35-202ENST00000561713 QSER1Q2KHR3 1735 aa26.57■■□□□ 1.84
VPS35-202ENST00000561713 AMPHP49418 695 aa26.57■■□□□ 1.84
VPS35-202ENST00000561713 POLD1P28340 1107 aa26.56■■□□□ 1.84
VPS35-202ENST00000561713 NSD2O96028 1365 aa26.56■■□□□ 1.84
VPS35-202ENST00000561713 ZCRB1Q8TBF4 217 aaKnown RBP26.55■■□□□ 1.84
VPS35-202ENST00000561713 GGNBP2Q9H3C7 697 aa26.55■■□□□ 1.84
VPS35-202ENST00000561713 TUBGCP6Q96RT7 1819 aa26.54■■□□□ 1.84
VPS35-202ENST00000561713 MEGF6O75095 1541 aa26.54■■□□□ 1.84
VPS35-202ENST00000561713 RRS1Q15050 365 aaKnown RBP26.53■■□□□ 1.84
VPS35-202ENST00000561713 COL24A1Q17RW2 1714 aa26.53■■□□□ 1.84
VPS35-202ENST00000561713 LY75O60449 1722 aa26.51■■□□□ 1.83
VPS35-202ENST00000561713 SLC24A1O60721 1099 aa26.51■■□□□ 1.83
VPS35-202ENST00000561713 PELP1Q8IZL8 1130 aaKnown RBP26.51■■□□□ 1.83
VPS35-202ENST00000561713 NSD3Q9BZ95 1437 aa26.5■■□□□ 1.83
VPS35-202ENST00000561713 C1QTNF8P60827 252 aa26.5■■□□□ 1.83
VPS35-202ENST00000561713 NBPF6Q5VWK0 638 aa26.5■■□□□ 1.83
VPS35-202ENST00000561713 NLGN2Q8NFZ4 835 aa26.5■■□□□ 1.83
VPS35-202ENST00000561713 NBPF4Q96M43 638 aa26.5■■□□□ 1.83
VPS35-202ENST00000561713 CCNL1Q9UK58 526 aaPredicted RBP26.5■■□□□ 1.83
VPS35-202ENST00000561713 RTL1A6NKG5 1358 aa26.49■■□□□ 1.83
VPS35-202ENST00000561713 FYB1O15117 783 aa26.49■■□□□ 1.83
VPS35-202ENST00000561713 SENP3-EIF4A1A0A087X0R7 540 aa26.48■■□□□ 1.83
VPS35-202ENST00000561713 USHBP1Q8N6Y0 703 aa26.48■■□□□ 1.83
VPS35-202ENST00000561713 ANKRD26Q9UPS8 1709 aa26.47■■□□□ 1.83
VPS35-202ENST00000561713 CLSPNQ9HAW4 1339 aa26.45■■□□□ 1.83
VPS35-202ENST00000561713 MSH5O43196 834 aa26.45■■□□□ 1.82
VPS35-202ENST00000561713 COL23A1Q86Y22 540 aaPredicted RBP26.45■■□□□ 1.82
VPS35-202ENST00000561713 CDCA8Q53HL2 280 aa26.44■■□□□ 1.82
VPS35-202ENST00000561713 CARD14Q9BXL6 1004 aa26.43■■□□□ 1.82
VPS35-202ENST00000561713 MAP2P11137 1827 aaKnown RBP26.42■■□□□ 1.82
VPS35-202ENST00000561713 RAPGEF4Q8WZA2 1011 aa26.42■■□□□ 1.82
VPS35-202ENST00000561713 CGNL1Q0VF96 1302 aa26.41■■□□□ 1.82
VPS35-202ENST00000561713 SMG6Q86US8 1419 aaKnown RBP26.41■■□□□ 1.82
VPS35-202ENST00000561713 POLR3GLQ9BT43 218 aa26.41■■□□□ 1.82
VPS35-202ENST00000561713 YBX3P16989 372 aaKnown RBP eCLIP26.4■■□□□ 1.822e-6■■□□□ 11.4
VPS35-202ENST00000561713 MSL1Q68DK7 614 aa26.4■■□□□ 1.82
VPS35-202ENST00000561713 TIMELESSQ9UNS1 1208 aa26.4■■□□□ 1.82
VPS35-202ENST00000561713 TATP17735 454 aaPredicted RBP26.39■■□□□ 1.82
VPS35-202ENST00000561713 HSP90AB2PQ58FF8 381 aa26.39■■□□□ 1.82
VPS35-202ENST00000561713 FLT4P35916 1363 aa26.38■■□□□ 1.81
VPS35-202ENST00000561713 TOGARAM1Q9Y4F4 1720 aa26.37■■□□□ 1.81
VPS35-202ENST00000561713 GIGYF1O75420 1035 aaPredicted RBP26.37■■□□□ 1.81
VPS35-202ENST00000561713 CEP350Q5VT06 3117 aa26.37■■□□□ 1.81
VPS35-202ENST00000561713 EMILIN1Q9Y6C2 1016 aa26.36■■□□□ 1.81
VPS35-202ENST00000561713 PKD1L3Q7Z443 1732 aa26.36■■□□□ 1.81
VPS35-202ENST00000561713 INSRP06213 1382 aa26.35■■□□□ 1.81
VPS35-202ENST00000561713 C5P01031 1676 aa26.35■■□□□ 1.81
VPS35-202ENST00000561713 CCER1Q8TC90 406 aaPredicted RBP26.35■■□□□ 1.81
VPS35-202ENST00000561713 PCDH11XQ9BZA7 1347 aa26.35■■□□□ 1.81
VPS35-202ENST00000561713 PCDH11YQ9BZA8 1340 aa26.35■■□□□ 1.81
VPS35-202ENST00000561713 GRIN3BO60391 1043 aa26.34■■□□□ 1.81
VPS35-202ENST00000561713 MPRIPQ6WCQ1 1025 aa26.34■■□□□ 1.81
VPS35-202ENST00000561713 PALLDQ8WX93 1383 aa26.33■■□□□ 1.81
VPS35-202ENST00000561713 CYP27B1O15528 508 aa26.32■■□□□ 1.8
VPS35-202ENST00000561713 ITGB4P16144 1822 aa26.32■■□□□ 1.8
VPS35-202ENST00000561713 HSPA5P11021 654 aaKnown RBP26.3■■□□□ 1.8
VPS35-202ENST00000561713 PPM1GO15355 546 aaPredicted RBP26.29■■□□□ 1.8
VPS35-202ENST00000561713 TAF1LQ8IZX4 1826 aa26.29■■□□□ 1.8
VPS35-202ENST00000561713 KIF24Q5T7B8 1368 aa26.29■■□□□ 1.8
VPS35-202ENST00000561713 AMIGO3Q86WK7 504 aa26.28■■□□□ 1.8
VPS35-202ENST00000561713 FLAD1Q8NFF5 587 aa26.28■■□□□ 1.8
VPS35-202ENST00000561713 CD2APQ9Y5K6 639 aa26.28■■□□□ 1.8
VPS35-202ENST00000561713 EIF4G2P78344 907 aaKnown RBP eCLIP26.25■■□□□ 1.79
VPS35-202ENST00000561713 SMIM5Q71RC9 77 aa26.25■■□□□ 1.79
VPS35-202ENST00000561713 C4BP0C0L5 1744 aa26.25■■□□□ 1.79
VPS35-202ENST00000561713 HMGB2P26583 209 aaKnown RBP26.24■■□□□ 1.79
VPS35-202ENST00000561713 PIGBQ92521 554 aa26.24■■□□□ 1.79
VPS35-202ENST00000561713 SMARCC1Q92922 1105 aaPredicted RBP26.24■■□□□ 1.79
VPS35-202ENST00000561713 AK7Q96M32 723 aa26.24■■□□□ 1.79
VPS35-202ENST00000561713 NCAPD2Q15021 1401 aa26.23■■□□□ 1.79
VPS35-202ENST00000561713 TNNT2P45379 298 aaPredicted RBP26.23■■□□□ 1.79
VPS35-202ENST00000561713 ATP10DQ9P241 1426 aa26.22■■□□□ 1.79
VPS35-202ENST00000561713 PHF14O94880 888 aa26.22■■□□□ 1.79
VPS35-202ENST00000561713 NKX1-1Q15270 411 aaPredicted RBP26.2■■□□□ 1.78
VPS35-202ENST00000561713 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP26.19■■□□□ 1.78
VPS35-202ENST00000561713 UBR3Q6ZT12 1888 aa26.18■■□□□ 1.78
VPS35-202ENST00000561713 WWC3Q9ULE0 1092 aa26.18■■□□□ 1.78
VPS35-202ENST00000561713 SPG7Q9UQ90 795 aa26.18■■□□□ 1.78
VPS35-202ENST00000561713 LINC00116Q8NCU8 138 aa26.17■■□□□ 1.78
VPS35-202ENST00000561713 POLKQ9UBT6 870 aa26.17■■□□□ 1.78
VPS35-202ENST00000561713 WASHC2AQ641Q2 1341 aa26.16■■□□□ 1.78
VPS35-202ENST00000561713 LOC102724428A0A0B4J2F2 783 aa26.16■■□□□ 1.78
VPS35-202ENST00000561713 SIK1P57059 783 aa26.16■■□□□ 1.78
VPS35-202ENST00000561713 IGSF1Q8N6C5 1336 aa26.15■■□□□ 1.78
VPS35-202ENST00000561713 EYA1Q99502 592 aa26.15■■□□□ 1.78
VPS35-202ENST00000561713 PANK3Q9H999 370 aa26.15■■□□□ 1.78
VPS35-202ENST00000561713 SSFA2P28290 1259 aa26.14■■□□□ 1.78
VPS35-202ENST00000561713 GPBP1L1Q9HC44 474 aaPredicted RBP26.14■■□□□ 1.78
VPS35-202ENST00000561713 ASAP1Q9ULH1 1129 aa26.14■■□□□ 1.78
VPS35-202ENST00000561713 ADCY9O60503 1353 aa26.13■■□□□ 1.77
VPS35-202ENST00000561713 ZNF526Q8TF50 670 aaPredicted RBP26.13■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms