RNA–Protein interactions for RNA: ENST00000561514.1

PALB2-202, Transcript of partner and localizer of BRCA2, humanhuman

TSL 5

Gene PALB2, Length 815 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PALB2-202ENST00000561514 CGNL1Q0VF96 1302 aa11.83□□□□□ -0.52
PALB2-202ENST00000561514 SLC16A10Q8TF71 515 aa11.82□□□□□ -0.52
PALB2-202ENST00000561514 USP47Q96K76 1375 aa11.81□□□□□ -0.52
PALB2-202ENST00000561514 FYB1O15117 783 aa11.81□□□□□ -0.52
PALB2-202ENST00000561514 ARXQ96QS3 562 aa11.81□□□□□ -0.52
PALB2-202ENST00000561514 PNPLA7Q6ZV29 1317 aa11.81□□□□□ -0.52
PALB2-202ENST00000561514 COL24A1Q17RW2 1714 aa11.8□□□□□ -0.52
PALB2-202ENST00000561514 NCAPD2Q15021 1401 aa11.8□□□□□ -0.52
PALB2-202ENST00000561514 ZCRB1Q8TBF4 217 aaKnown RBP11.8□□□□□ -0.52
PALB2-202ENST00000561514 QSER1Q2KHR3 1735 aa11.8□□□□□ -0.52
PALB2-202ENST00000561514 INSRP06213 1382 aa11.79□□□□□ -0.52
PALB2-202ENST00000561514 FBLN1P23142 703 aa11.79□□□□□ -0.52
PALB2-202ENST00000561514 AMPHP49418 695 aa11.79□□□□□ -0.52
PALB2-202ENST00000561514 PRIM1P49642 420 aaKnown RBP11.79□□□□□ -0.52
PALB2-202ENST00000561514 TMF1P82094 1093 aa11.79□□□□□ -0.52
PALB2-202ENST00000561514 NBPF6Q5VWK0 638 aa11.79□□□□□ -0.52
PALB2-202ENST00000561514 DDX54Q8TDD1 881 aaKnown RBP11.79□□□□□ -0.52
PALB2-202ENST00000561514 NBPF4Q96M43 638 aa11.79□□□□□ -0.52
PALB2-202ENST00000561514 SHANK3Q9BYB0 1731 aa11.79□□□□□ -0.52
PALB2-202ENST00000561514 FLT4P35916 1363 aa11.79□□□□□ -0.52
PALB2-202ENST00000561514 LTV1Q96GA3 475 aaPredicted RBP11.78□□□□□ -0.52
PALB2-202ENST00000561514 SMG6Q86US8 1419 aaKnown RBP11.77□□□□□ -0.52
PALB2-202ENST00000561514 RRS1Q15050 365 aaKnown RBP11.77□□□□□ -0.53
PALB2-202ENST00000561514 ZNF784Q8NCA9 323 aaPredicted RBP11.77□□□□□ -0.53
PALB2-202ENST00000561514 GGNBP2Q9H3C7 697 aa11.77□□□□□ -0.53
PALB2-202ENST00000561514 CDCA8Q53HL2 280 aa11.76□□□□□ -0.53
PALB2-202ENST00000561514 LY75O60449 1722 aa11.76□□□□□ -0.53
PALB2-202ENST00000561514 DOT1LQ8TEK3 1739 aa11.76□□□□□ -0.53
PALB2-202ENST00000561514 PCDH11XQ9BZA7 1347 aa11.75□□□□□ -0.53
PALB2-202ENST00000561514 PCDH11YQ9BZA8 1340 aa11.75□□□□□ -0.53
PALB2-202ENST00000561514 POLD1P28340 1107 aa11.74□□□□□ -0.53
PALB2-202ENST00000561514 HSP90AB2PQ58FF8 381 aa11.74□□□□□ -0.53
PALB2-202ENST00000561514 RAPGEF4Q8WZA2 1011 aa11.74□□□□□ -0.53
PALB2-202ENST00000561514 CARD14Q9BXL6 1004 aa11.74□□□□□ -0.53
PALB2-202ENST00000561514 TFCP2L1Q9NZI6 479 aa11.74□□□□□ -0.53
PALB2-202ENST00000561514 CCNL1Q9UK58 526 aaPredicted RBP11.74□□□□□ -0.53
PALB2-202ENST00000561514 TIMELESSQ9UNS1 1208 aa11.74□□□□□ -0.53
PALB2-202ENST00000561514 PLEKHG2Q9H7P9 1386 aa11.74□□□□□ -0.53
PALB2-202ENST00000561514 CYP27B1O15528 508 aa11.73□□□□□ -0.53
PALB2-202ENST00000561514 HMGB2P26583 209 aaKnown RBP11.73□□□□□ -0.53
PALB2-202ENST00000561514 USHBP1Q8N6Y0 703 aa11.73□□□□□ -0.53
PALB2-202ENST00000561514 SYTL4Q96C24 671 aaPredicted RBP11.73□□□□□ -0.53
PALB2-202ENST00000561514 NSD3Q9BZ95 1437 aa11.73□□□□□ -0.53
PALB2-202ENST00000561514 TATP17735 454 aaPredicted RBP11.72□□□□□ -0.53
PALB2-202ENST00000561514 KCNQ4P56696 695 aa11.72□□□□□ -0.53
PALB2-202ENST00000561514 NKX1-1Q15270 411 aaPredicted RBP11.72□□□□□ -0.53
PALB2-202ENST00000561514 RNF216Q9NWF9 866 aaPredicted RBP11.72□□□□□ -0.53
PALB2-202ENST00000561514 ANKRD26Q9UPS8 1709 aa11.72□□□□□ -0.53
PALB2-202ENST00000561514 PALLDQ8WX93 1383 aa11.71□□□□□ -0.53
PALB2-202ENST00000561514 CLSPNQ9HAW4 1339 aa11.71□□□□□ -0.53
PALB2-202ENST00000561514 TRIM26Q12899 539 aaPredicted RBP11.71□□□□□ -0.53
PALB2-202ENST00000561514 COL23A1Q86Y22 540 aaPredicted RBP11.71□□□□□ -0.53
PALB2-202ENST00000561514 EMILIN1Q9Y6C2 1016 aa11.71□□□□□ -0.53
PALB2-202ENST00000561514 TUBGCP6Q96RT7 1819 aa11.71□□□□□ -0.54
PALB2-202ENST00000561514 RGPD2P0DJD1 1756 aa11.7□□□□□ -0.54
PALB2-202ENST00000561514 WASHC2AQ641Q2 1341 aa11.7□□□□□ -0.54
PALB2-202ENST00000561514 PKD1L3Q7Z443 1732 aa11.7□□□□□ -0.54
PALB2-202ENST00000561514 NLGN2Q8NFZ4 835 aa11.7□□□□□ -0.54
PALB2-202ENST00000561514 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.7□□□□□ -0.542e-6■□□□□ 10.6
PALB2-202ENST00000561514 GOLGB1Q14789 3259 aaKnown RBP11.7□□□□□ -0.54
PALB2-202ENST00000561514 FLAD1Q8NFF5 587 aa11.69□□□□□ -0.54
PALB2-202ENST00000561514 KIF20BQ96Q89 1820 aa11.69□□□□□ -0.54
PALB2-202ENST00000561514 HOXD11P31277 338 aaPredicted RBP11.68□□□□□ -0.54
PALB2-202ENST00000561514 SMARCC1Q92922 1105 aaPredicted RBP11.68□□□□□ -0.54
PALB2-202ENST00000561514 TOGARAM1Q9Y4F4 1720 aa11.68□□□□□ -0.54
PALB2-202ENST00000561514 GPR162Q16538 588 aa11.67□□□□□ -0.54
PALB2-202ENST00000561514 CD2APQ9Y5K6 639 aa11.67□□□□□ -0.54
PALB2-202ENST00000561514 C5P01031 1676 aa11.66□□□□□ -0.54
PALB2-202ENST00000561514 YBX3P16989 372 aaKnown RBP eCLIP11.66□□□□□ -0.54
PALB2-202ENST00000561514 PIGBQ92521 554 aa11.66□□□□□ -0.54
PALB2-202ENST00000561514 EYA1Q99502 592 aa11.66□□□□□ -0.54
PALB2-202ENST00000561514 POLKQ9UBT6 870 aa11.66□□□□□ -0.54
PALB2-202ENST00000561514 GRIN3BO60391 1043 aa11.65□□□□□ -0.54
PALB2-202ENST00000561514 C1QTNF8P60827 252 aa11.65□□□□□ -0.54
PALB2-202ENST00000561514 MPRIPQ6WCQ1 1025 aa11.65□□□□□ -0.54
PALB2-202ENST00000561514 AMIGO3Q86WK7 504 aa11.65□□□□□ -0.54
PALB2-202ENST00000561514 SPG7Q9UQ90 795 aa11.65□□□□□ -0.54
PALB2-202ENST00000561514 KDRP35968 1356 aa11.65□□□□□ -0.55
PALB2-202ENST00000561514 CHD4Q14839 1912 aa11.64□□□□□ -0.55
PALB2-202ENST00000561514 C4BP0C0L5 1744 aa11.64□□□□□ -0.55
PALB2-202ENST00000561514 SSFA2P28290 1259 aa11.64□□□□□ -0.55
PALB2-202ENST00000561514 ADCY9O60503 1353 aa11.64□□□□□ -0.55
PALB2-202ENST00000561514 IGSF1Q8N6C5 1336 aa11.63□□□□□ -0.55
PALB2-202ENST00000561514 MAP2P11137 1827 aaKnown RBP11.63□□□□□ -0.55
PALB2-202ENST00000561514 KAT6BQ8WYB5 2073 aa11.63□□□□□ -0.55
PALB2-202ENST00000561514 LOC102724428A0A0B4J2F2 783 aa11.63□□□□□ -0.55
PALB2-202ENST00000561514 PHKG2P15735 406 aa11.63□□□□□ -0.55
PALB2-202ENST00000561514 SIK1P57059 783 aa11.63□□□□□ -0.55
PALB2-202ENST00000561514 MSL1Q68DK7 614 aa11.63□□□□□ -0.55
PALB2-202ENST00000561514 EIF4A2Q14240 407 aaKnown RBP11.62□□□□□ -0.55
PALB2-202ENST00000561514 IFNL2Q8IZJ0 200 aa11.62□□□□□ -0.55
PALB2-202ENST00000561514 KLHL34Q8N239 644 aa11.62□□□□□ -0.55
PALB2-202ENST00000561514 LINC00116Q8NCU8 138 aa11.62□□□□□ -0.55
PALB2-202ENST00000561514 AK7Q96M32 723 aa11.62□□□□□ -0.55
PALB2-202ENST00000561514 TAF1LQ8IZX4 1826 aa11.62□□□□□ -0.55
PALB2-202ENST00000561514 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.61□□□□□ -0.55
PALB2-202ENST00000561514 ITPK1Q13572 414 aa11.61□□□□□ -0.55
PALB2-202ENST00000561514 TMOD3Q9NYL9 352 aa11.6□□□□□ -0.55
PALB2-202ENST00000561514 ASAP1Q9ULH1 1129 aa11.6□□□□□ -0.55
PALB2-202ENST00000561514 UBR3Q6ZT12 1888 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms