RNA–Protein interactions for RNA: ENST00000561128.1

CHRNA3-208, Transcript of cholinergic receptor nicotinic alpha 3 subunit, humanhuman

TSL 2

Gene CHRNA3, Length 499 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA3-208ENST00000561128 PROM2Q8N271 834 aa17.52■□□□□ 0.4
CHRNA3-208ENST00000561128 BCL11BQ9C0K0 894 aaPredicted RBP17.52■□□□□ 0.4
CHRNA3-208ENST00000561128 SMG6Q86US8 1419 aaKnown RBP17.51■□□□□ 0.39
CHRNA3-208ENST00000561128 POLKQ9UBT6 870 aa17.51■□□□□ 0.39
CHRNA3-208ENST00000561128 NSD2O96028 1365 aa17.51■□□□□ 0.39
CHRNA3-208ENST00000561128 KIF24Q5T7B8 1368 aa17.51■□□□□ 0.39
CHRNA3-208ENST00000561128 CASZ1Q86V15 1759 aa17.5■□□□□ 0.39
CHRNA3-208ENST00000561128 PPM1GO15355 546 aaPredicted RBP17.49■□□□□ 0.39
CHRNA3-208ENST00000561128 DDX54Q8TDD1 881 aaKnown RBP17.48■□□□□ 0.39
CHRNA3-208ENST00000561128 PLSCR1O15162 318 aa17.46■□□□□ 0.39
CHRNA3-208ENST00000561128 WASHC2AQ641Q2 1341 aa17.46■□□□□ 0.38
CHRNA3-208ENST00000561128 SRCAPQ6ZRS2 3230 aa17.45■□□□□ 0.38
CHRNA3-208ENST00000561128 AMER1Q5JTC6 1135 aaPredicted RBP17.45■□□□□ 0.38
CHRNA3-208ENST00000561128 PDGFDQ9GZP0 370 aaPredicted RBP17.45■□□□□ 0.38
CHRNA3-208ENST00000561128 EIF4A2Q14240 407 aaKnown RBP17.44■□□□□ 0.38
CHRNA3-208ENST00000561128 ZCRB1Q8TBF4 217 aaKnown RBP17.44■□□□□ 0.38
CHRNA3-208ENST00000561128 EYA1Q99502 592 aa17.44■□□□□ 0.38
CHRNA3-208ENST00000561128 TXNRD1Q16881 649 aa17.43■□□□□ 0.38
CHRNA3-208ENST00000561128 LY75O60449 1722 aa17.43■□□□□ 0.38
CHRNA3-208ENST00000561128 TUBGCP6Q96RT7 1819 aa17.42■□□□□ 0.38
CHRNA3-208ENST00000561128 CYP27B1O15528 508 aa17.41■□□□□ 0.38
CHRNA3-208ENST00000561128 PER1O15534 1290 aaPredicted RBP17.41■□□□□ 0.38
CHRNA3-208ENST00000561128 PRIM1P49642 420 aaKnown RBP17.4■□□□□ 0.38
CHRNA3-208ENST00000561128 KCNQ4P56696 695 aa17.4■□□□□ 0.38
CHRNA3-208ENST00000561128 RAPGEF4Q8WZA2 1011 aa17.4■□□□□ 0.38
CHRNA3-208ENST00000561128 LRRC4BQ9NT99 713 aa17.4■□□□□ 0.38
CHRNA3-208ENST00000561128 ITGB4P16144 1822 aa17.4■□□□□ 0.38
CHRNA3-208ENST00000561128 TATP17735 454 aaPredicted RBP17.39■□□□□ 0.37
CHRNA3-208ENST00000561128 MORC1Q86VD1 984 aa17.39■□□□□ 0.37
CHRNA3-208ENST00000561128 IGSF1Q8N6C5 1336 aa17.39■□□□□ 0.37
CHRNA3-208ENST00000561128 ZNF827Q17R98 1081 aa17.38■□□□□ 0.37
CHRNA3-208ENST00000561128 KNSTRNQ9Y448 316 aa17.38■□□□□ 0.37
CHRNA3-208ENST00000561128 SYTL4Q96C24 671 aaPredicted RBP17.37■□□□□ 0.37
CHRNA3-208ENST00000561128 PCDH11XQ9BZA7 1347 aa17.37■□□□□ 0.37
CHRNA3-208ENST00000561128 PCDH11YQ9BZA8 1340 aa17.37■□□□□ 0.37
CHRNA3-208ENST00000561128 AEBP1Q8IUX7 1158 aa17.36■□□□□ 0.37
CHRNA3-208ENST00000561128 COL3A1P02461 1466 aaPredicted RBP17.36■□□□□ 0.37
CHRNA3-208ENST00000561128 KAT6BQ8WYB5 2073 aa17.35■□□□□ 0.37
CHRNA3-208ENST00000561128 CC2D1BQ5T0F9 858 aaKnown RBP17.35■□□□□ 0.37
CHRNA3-208ENST00000561128 NBPF14Q5TI25 921 aa17.35■□□□□ 0.37
CHRNA3-208ENST00000561128 CNGB1Q14028 1251 aaPredicted RBP17.34■□□□□ 0.37
CHRNA3-208ENST00000561128 C5P01031 1676 aa17.33■□□□□ 0.37
CHRNA3-208ENST00000561128 QSER1Q2KHR3 1735 aa17.33■□□□□ 0.36
CHRNA3-208ENST00000561128 SLC15A2Q16348 729 aa17.32■□□□□ 0.36
CHRNA3-208ENST00000561128 KDM6AO15550 1401 aaPredicted RBP17.31■□□□□ 0.36
CHRNA3-208ENST00000561128 TAF1LQ8IZX4 1826 aa17.31■□□□□ 0.36
CHRNA3-208ENST00000561128 IL13P35225 146 aa17.31■□□□□ 0.36
CHRNA3-208ENST00000561128 ZBTB7AO95365 584 aa17.3■□□□□ 0.36
CHRNA3-208ENST00000561128 STK32BQ9NY57 414 aa17.3■□□□□ 0.36
CHRNA3-208ENST00000561128 PHKG2P15735 406 aa17.29■□□□□ 0.36
CHRNA3-208ENST00000561128 MTHFSP49914 203 aa17.29■□□□□ 0.36
CHRNA3-208ENST00000561128 NKX1-1Q15270 411 aaPredicted RBP17.29■□□□□ 0.36
CHRNA3-208ENST00000561128 AKT1S1Q96B36 256 aa17.29■□□□□ 0.36
CHRNA3-208ENST00000561128 KDRP35968 1356 aa17.28■□□□□ 0.36
CHRNA3-208ENST00000561128 PALLDQ8WX93 1383 aa17.28■□□□□ 0.36
CHRNA3-208ENST00000561128 NPC1L1Q9UHC9 1359 aa17.28■□□□□ 0.36
CHRNA3-208ENST00000561128 PTGER2P43116 358 aa17.27■□□□□ 0.36
CHRNA3-208ENST00000561128 MPRIPQ6WCQ1 1025 aa17.27■□□□□ 0.36
CHRNA3-208ENST00000561128 PIGBQ92521 554 aa17.27■□□□□ 0.36
CHRNA3-208ENST00000561128 SPG7Q9UQ90 795 aa17.27■□□□□ 0.36
CHRNA3-208ENST00000561128 COL24A1Q17RW2 1714 aa17.27■□□□□ 0.35
CHRNA3-208ENST00000561128 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.26■□□□□ 0.35
CHRNA3-208ENST00000561128 C4BP0C0L5 1744 aa17.26■□□□□ 0.35
CHRNA3-208ENST00000561128 PNPLA7Q6ZV29 1317 aa17.25■□□□□ 0.35
CHRNA3-208ENST00000561128 SLC27A3Q5K4L6 730 aa17.25■□□□□ 0.35
CHRNA3-208ENST00000561128 SULT6B1Q6IMI4 303 aa17.25■□□□□ 0.35
CHRNA3-208ENST00000561128 AMIGO3Q86WK7 504 aa17.25■□□□□ 0.35
CHRNA3-208ENST00000561128 SPON1Q9HCB6 807 aa17.25■□□□□ 0.35
CHRNA3-208ENST00000561128 CCNL1Q9UK58 526 aaPredicted RBP17.25■□□□□ 0.35
CHRNA3-208ENST00000561128 ATF5Q9Y2D1 282 aaPredicted RBP17.25■□□□□ 0.35
CHRNA3-208ENST00000561128 SMIM5Q71RC9 77 aa17.24■□□□□ 0.35
CHRNA3-208ENST00000561128 SGIP1Q9BQI5 828 aa17.24■□□□□ 0.35
CHRNA3-208ENST00000561128 PLEKHG2Q9H7P9 1386 aa17.24■□□□□ 0.35
CHRNA3-208ENST00000561128 HMOX1P09601 288 aa17.23■□□□□ 0.35
CHRNA3-208ENST00000561128 ZNF530Q6P9A1 599 aaPredicted RBP17.23■□□□□ 0.35
CHRNA3-208ENST00000561128 ASAP1Q9ULH1 1129 aa17.23■□□□□ 0.35
CHRNA3-208ENST00000561128 SCN11AQ9UI33 1791 aa17.23■□□□□ 0.35
CHRNA3-208ENST00000561128 VIRMAQ69YN4 1812 aaKnown RBP17.22■□□□□ 0.35
CHRNA3-208ENST00000561128 IFNL2Q8IZJ0 200 aa17.22■□□□□ 0.35
CHRNA3-208ENST00000561128 ADAMTS7Q9UKP4 1686 aa17.22■□□□□ 0.35
CHRNA3-208ENST00000561128 UBR3Q6ZT12 1888 aa17.22■□□□□ 0.35
CHRNA3-208ENST00000561128 COL5A3P25940 1745 aaPredicted RBP17.19■□□□□ 0.34
CHRNA3-208ENST00000561128 ITPK1Q13572 414 aa17.19■□□□□ 0.34
CHRNA3-208ENST00000561128 SLC4A9Q96Q91 983 aa17.19■□□□□ 0.34
CHRNA3-208ENST00000561128 ATG3Q9NT62 314 aa17.19■□□□□ 0.34
CHRNA3-208ENST00000561128 TMOD3Q9NYL9 352 aa17.19■□□□□ 0.34
CHRNA3-208ENST00000561128 TJP1Q07157 1748 aa17.18■□□□□ 0.34
CHRNA3-208ENST00000561128 MRC1P22897 1456 aa17.18■□□□□ 0.34
CHRNA3-208ENST00000561128 PLEKHO1Q53GL0 409 aaPredicted RBP17.18■□□□□ 0.34
CHRNA3-208ENST00000561128 LINC00116Q8NCU8 138 aa17.18■□□□□ 0.34
CHRNA3-208ENST00000561128 MTFR1LQ9H019 292 aa17.18■□□□□ 0.34
CHRNA3-208ENST00000561128 DIAPH1O60610 1272 aaKnown RBP17.17■□□□□ 0.34
CHRNA3-208ENST00000561128 ZNF831Q5JPB2 1677 aa17.16■□□□□ 0.34
CHRNA3-208ENST00000561128 LOC102724428A0A0B4J2F2 783 aa17.16■□□□□ 0.34
CHRNA3-208ENST00000561128 SIK1P57059 783 aa17.16■□□□□ 0.34
CHRNA3-208ENST00000561128 COL23A1Q86Y22 540 aaPredicted RBP17.16■□□□□ 0.34
CHRNA3-208ENST00000561128 TFCP2L1Q9NZI6 479 aa17.16■□□□□ 0.34
CHRNA3-208ENST00000561128 PPP1R1BQ9UD71 204 aaPredicted RBP17.16■□□□□ 0.34
CHRNA3-208ENST00000561128 PPP2R1AP30153 589 aa17.15■□□□□ 0.34
CHRNA3-208ENST00000561128 DCAF5Q96JK2 942 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms