RNA–Protein interactions for RNA: ENST00000560861.1

SNX1-212, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-212ENST00000560861 CRB1P82279 1406 aa14.76□□□□□ -0.05
SNX1-212ENST00000560861 GTF3C3Q9Y5Q9 886 aa14.76□□□□□ -0.05
SNX1-212ENST00000560861 PARP4Q9UKK3 1724 aaKnown RBP14.75□□□□□ -0.05
SNX1-212ENST00000560861 FANCIQ9NVI1 1328 aa14.75□□□□□ -0.05
SNX1-212ENST00000560861 HTATSF1O43719 755 aaKnown RBP14.75□□□□□ -0.05
SNX1-212ENST00000560861 THUMPD2Q9BTF0 503 aaKnown RBP14.75□□□□□ -0.05
SNX1-212ENST00000560861 RCAN3Q9UKA8 241 aa14.75□□□□□ -0.05
SNX1-212ENST00000560861 MAP3K5Q99683 1374 aa14.74□□□□□ -0.05
SNX1-212ENST00000560861 HAP1P54257 671 aaPredicted RBP14.74□□□□□ -0.05
SNX1-212ENST00000560861 MYH16Q9H6N6 1097 aa14.74□□□□□ -0.05
SNX1-212ENST00000560861 NWD2Q9ULI1 1742 aa14.74□□□□□ -0.05
SNX1-212ENST00000560861 JCADQ9P266 1359 aa14.73□□□□□ -0.05
SNX1-212ENST00000560861 WNK3Q9BYP7 1800 aa14.73□□□□□ -0.05
SNX1-212ENST00000560861 SHANK3Q9BYB0 1731 aa14.73□□□□□ -0.05
SNX1-212ENST00000560861 IFT57Q9NWB7 429 aa14.73□□□□□ -0.05
SNX1-212ENST00000560861 NLRP2Q9NX02 1062 aa14.73□□□□□ -0.05
SNX1-212ENST00000560861 CALD1Q05682 793 aaKnown RBP14.72□□□□□ -0.05
SNX1-212ENST00000560861 DCTN1Q14203 1278 aa14.72□□□□□ -0.05
SNX1-212ENST00000560861 OVOS2A0A0G2JMS6 1433 aa14.72□□□□□ -0.05
SNX1-212ENST00000560861 SIPA1L3O60292 1781 aaPredicted RBP14.72□□□□□ -0.05
SNX1-212ENST00000560861 CEMIPQ8WUJ3 1361 aa14.72□□□□□ -0.05
SNX1-212ENST00000560861 SCN11AQ9UI33 1791 aa14.71□□□□□ -0.05
SNX1-212ENST00000560861 AMOTQ4VCS5 1084 aa14.71□□□□□ -0.05
SNX1-212ENST00000560861 PLEKHO1Q53GL0 409 aaPredicted RBP14.71□□□□□ -0.05
SNX1-212ENST00000560861 TSR2Q969E8 191 aaKnown RBP14.71□□□□□ -0.05
SNX1-212ENST00000560861 CFAP44Q96MT7 982 aa14.71□□□□□ -0.05
SNX1-212ENST00000560861 CARD10Q9BWT7 1032 aa14.71□□□□□ -0.05
SNX1-212ENST00000560861 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.71□□□□□ -0.05
SNX1-212ENST00000560861 RGS17Q9UGC6 210 aaPredicted RBP14.71□□□□□ -0.05
SNX1-212ENST00000560861 SLIT2O94813 1529 aa14.71□□□□□ -0.06
SNX1-212ENST00000560861 GNAT3A8MTJ3 354 aa14.7□□□□□ -0.06
SNX1-212ENST00000560861 CSB-PGBD3P0DP91 1061 aa14.7□□□□□ -0.06
SNX1-212ENST00000560861 GNAI1P63096 354 aa14.7□□□□□ -0.06
SNX1-212ENST00000560861 MCM10Q7L590 875 aa14.7□□□□□ -0.06
SNX1-212ENST00000560861 IL17REQ8NFR9 667 aa14.7□□□□□ -0.06
SNX1-212ENST00000560861 DISP2A7MBM2 1401 aa14.69□□□□□ -0.06
SNX1-212ENST00000560861 CHL1O00533 1208 aa14.69□□□□□ -0.06
SNX1-212ENST00000560861 LARP1Q6PKG0 1096 aaKnown RBP14.69□□□□□ -0.06
SNX1-212ENST00000560861 KDM3BQ7LBC6 1761 aa14.69□□□□□ -0.06
SNX1-212ENST00000560861 LRP6O75581 1613 aa14.69□□□□□ -0.06
SNX1-212ENST00000560861 CT47B1P0C2W7 299 aaPredicted RBP14.68□□□□□ -0.06
SNX1-212ENST00000560861 TATP17735 454 aaPredicted RBP14.68□□□□□ -0.06
SNX1-212ENST00000560861 RRP1P56182 461 aaKnown RBP14.68□□□□□ -0.06
SNX1-212ENST00000560861 AKAP4Q5JQC9 854 aa14.68□□□□□ -0.06
SNX1-212ENST00000560861 ZNF530Q6P9A1 599 aaPredicted RBP14.68□□□□□ -0.06
SNX1-212ENST00000560861 MBIPQ9NS73 344 aa14.68□□□□□ -0.06
SNX1-212ENST00000560861 BTG4Q9NY30 223 aa14.68□□□□□ -0.06
SNX1-212ENST00000560861 EXOSC9Q06265 439 aaKnown RBP14.67□□□□□ -0.06
SNX1-212ENST00000560861 TOM1L2Q6ZVM7 507 aa14.67□□□□□ -0.06
SNX1-212ENST00000560861 RAPGEF4Q8WZA2 1011 aa14.67□□□□□ -0.06
SNX1-212ENST00000560861 MRC1P22897 1456 aa14.66□□□□□ -0.06
SNX1-212ENST00000560861 RTF1Q92541 710 aaKnown RBP14.66□□□□□ -0.06
SNX1-212ENST00000560861 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.66□□□□□ -0.06
SNX1-212ENST00000560861 KDM6AO15550 1401 aaPredicted RBP14.66□□□□□ -0.06
SNX1-212ENST00000560861 SPATA31A6Q5VVP1 1343 aa14.66□□□□□ -0.06
SNX1-212ENST00000560861 RARSP54136 660 aaKnown RBP14.65□□□□□ -0.06
SNX1-212ENST00000560861 PPP4R3CPQ6ZMV5 832 aa14.65□□□□□ -0.06
SNX1-212ENST00000560861 STRN4Q9NRL3 753 aa14.65□□□□□ -0.06
SNX1-212ENST00000560861 ADAMTS2O95450 1211 aa14.64□□□□□ -0.07
SNX1-212ENST00000560861 PHKG2P15735 406 aa14.64□□□□□ -0.07
SNX1-212ENST00000560861 LGR6Q9HBX8 967 aa14.64□□□□□ -0.07
SNX1-212ENST00000560861 BABAM1Q9NWV8 329 aa14.64□□□□□ -0.07
SNX1-212ENST00000560861 CYP27B1O15528 508 aa14.63□□□□□ -0.07
SNX1-212ENST00000560861 RNMTO43148 476 aaKnown RBP14.63□□□□□ -0.07
SNX1-212ENST00000560861 NEFLP07196 543 aa14.63□□□□□ -0.07
SNX1-212ENST00000560861 EVA1CP58658 441 aa14.63□□□□□ -0.07
SNX1-212ENST00000560861 FKBP8Q14318 412 aa14.63□□□□□ -0.07
SNX1-212ENST00000560861 SPG7Q9UQ90 795 aa14.63□□□□□ -0.07
SNX1-212ENST00000560861 NUTM2BA6NNL0 878 aaPredicted RBP14.62□□□□□ -0.07
SNX1-212ENST00000560861 NUTM2EB1AL46 878 aaPredicted RBP14.62□□□□□ -0.07
SNX1-212ENST00000560861 VAMP4O75379 141 aa14.62□□□□□ -0.07
SNX1-212ENST00000560861 BCAR3O75815 825 aa14.62□□□□□ -0.07
SNX1-212ENST00000560861 IL2RBP14784 551 aa14.62□□□□□ -0.07
SNX1-212ENST00000560861 ERICH6BQ5W0A0 696 aa14.62□□□□□ -0.07
SNX1-212ENST00000560861 NUTM2AQ8IVF1 878 aaPredicted RBP14.62□□□□□ -0.07
SNX1-212ENST00000560861 LAS1LQ9Y4W2 734 aaKnown RBP14.62□□□□□ -0.07
SNX1-212ENST00000560861 BCL9LQ86UU0 1499 aa14.62□□□□□ -0.07
SNX1-212ENST00000560861 TOGARAM1Q9Y4F4 1720 aa14.61□□□□□ -0.07
SNX1-212ENST00000560861 IRX6P78412 446 aaPredicted RBP14.61□□□□□ -0.07
SNX1-212ENST00000560861 TAF7Q15545 349 aaPredicted RBP14.61□□□□□ -0.07
SNX1-212ENST00000560861 C1orf141Q5JVX7 400 aa14.61□□□□□ -0.07
SNX1-212ENST00000560861 MPRIPQ6WCQ1 1025 aa14.61□□□□□ -0.07
SNX1-212ENST00000560861 TSPYL6Q8N831 410 aa14.61□□□□□ -0.07
SNX1-212ENST00000560861 C8orf58Q8NAV2 365 aa14.61□□□□□ -0.07
SNX1-212ENST00000560861 SPATA31A1Q5TZJ5 1347 aa14.61□□□□□ -0.07
SNX1-212ENST00000560861 POTEAQ6S8J7 498 aa14.6□□□□□ -0.07
SNX1-212ENST00000560861 IFNL2Q8IZJ0 200 aa14.6□□□□□ -0.07
SNX1-212ENST00000560861 ZCRB1Q8TBF4 217 aaKnown RBP14.6□□□□□ -0.07
SNX1-212ENST00000560861 ZNF428Q96B54 188 aa14.6□□□□□ -0.07
SNX1-212ENST00000560861 SPATA31A5Q5VU36 1347 aa14.6□□□□□ -0.07
SNX1-212ENST00000560861 SPATA31A7Q8IWB4 1347 aa14.6□□□□□ -0.07
SNX1-212ENST00000560861 BRPF1P55201 1214 aaPredicted RBP14.59□□□□□ -0.07
SNX1-212ENST00000560861 NKX1-1Q15270 411 aaPredicted RBP14.59□□□□□ -0.07
SNX1-212ENST00000560861 ALDH1L2Q3SY69 923 aa14.59□□□□□ -0.07
SNX1-212ENST00000560861 FNBP4Q8N3X1 1017 aaPredicted RBP14.59□□□□□ -0.07
SNX1-212ENST00000560861 SSH1Q8WYL5 1049 aa14.59□□□□□ -0.07
SNX1-212ENST00000560861 MIS18AQ9NYP9 233 aa14.59□□□□□ -0.07
SNX1-212ENST00000560861 PCDH11XQ9BZA7 1347 aa14.59□□□□□ -0.07
SNX1-212ENST00000560861 PCDH11YQ9BZA8 1340 aa14.59□□□□□ -0.07
SNX1-212ENST00000560861 PAPPAQ13219 1627 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms