RNA–Protein interactions for RNA: ENST00000560620.1

CTDSPL2-209, Transcript of CTD small phosphatase like 2, humanhuman

TSL 3

Gene CTDSPL2, Length 863 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDSPL2-209ENST00000560620 AMER1Q5JTC6 1135 aaPredicted RBP17.65■□□□□ 0.42
CTDSPL2-209ENST00000560620 KCNQ2O43526 872 aa17.64■□□□□ 0.41
CTDSPL2-209ENST00000560620 SYTL4Q96C24 671 aaPredicted RBP17.64■□□□□ 0.41
CTDSPL2-209ENST00000560620 EIF4A2Q14240 407 aaKnown RBP17.63■□□□□ 0.41
CTDSPL2-209ENST00000560620 EYA1Q99502 592 aa17.63■□□□□ 0.41
CTDSPL2-209ENST00000560620 PLSCR1O15162 318 aa17.62■□□□□ 0.41
CTDSPL2-209ENST00000560620 PER1O15534 1290 aaPredicted RBP17.62■□□□□ 0.41
CTDSPL2-209ENST00000560620 R3HDM1Q15032 1099 aaKnown RBP17.62■□□□□ 0.41
CTDSPL2-209ENST00000560620 NBPF14Q5TI25 921 aa17.62■□□□□ 0.41
CTDSPL2-209ENST00000560620 NHSQ6T4R5 1651 aa17.61■□□□□ 0.41
CTDSPL2-209ENST00000560620 PCDH11XQ9BZA7 1347 aa17.6■□□□□ 0.41
CTDSPL2-209ENST00000560620 PCDH11YQ9BZA8 1340 aa17.6■□□□□ 0.41
CTDSPL2-209ENST00000560620 SPG7Q9UQ90 795 aa17.59■□□□□ 0.41
CTDSPL2-209ENST00000560620 RREB1Q92766 1687 aa17.58■□□□□ 0.41
CTDSPL2-209ENST00000560620 PRIM1P49642 420 aaKnown RBP17.58■□□□□ 0.4
CTDSPL2-209ENST00000560620 NUP188Q5SRE5 1749 aa17.58■□□□□ 0.4
CTDSPL2-209ENST00000560620 SHANK3Q9BYB0 1731 aa17.58■□□□□ 0.4
CTDSPL2-209ENST00000560620 MTHFSP49914 203 aa17.57■□□□□ 0.4
CTDSPL2-209ENST00000560620 RGPD3A6NKT7 1758 aaPredicted RBP17.56■□□□□ 0.4
CTDSPL2-209ENST00000560620 RGPD4Q7Z3J3 1758 aa17.56■□□□□ 0.4
CTDSPL2-209ENST00000560620 DOT1LQ8TEK3 1739 aa17.56■□□□□ 0.4
CTDSPL2-209ENST00000560620 TXNRD1Q16881 649 aa17.56■□□□□ 0.4
CTDSPL2-209ENST00000560620 BTAF1O14981 1849 aa17.56■□□□□ 0.4
CTDSPL2-209ENST00000560620 IGSF1Q8N6C5 1336 aa17.55■□□□□ 0.4
CTDSPL2-209ENST00000560620 CYP27B1O15528 508 aa17.54■□□□□ 0.4
CTDSPL2-209ENST00000560620 NCAPD2Q15021 1401 aa17.54■□□□□ 0.4
CTDSPL2-209ENST00000560620 NPC1L1Q9UHC9 1359 aa17.53■□□□□ 0.4
CTDSPL2-209ENST00000560620 PROM2Q8N271 834 aa17.53■□□□□ 0.4
CTDSPL2-209ENST00000560620 PKD1L3Q7Z443 1732 aa17.52■□□□□ 0.4
CTDSPL2-209ENST00000560620 SULT6B1Q6IMI4 303 aa17.52■□□□□ 0.4
CTDSPL2-209ENST00000560620 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.52■□□□□ 0.42e-6■□□□□ 9.7
CTDSPL2-209ENST00000560620 MPRIPQ6WCQ1 1025 aa17.51■□□□□ 0.39
CTDSPL2-209ENST00000560620 IFNL2Q8IZJ0 200 aa17.51■□□□□ 0.39
CTDSPL2-209ENST00000560620 STK32BQ9NY57 414 aa17.51■□□□□ 0.39
CTDSPL2-209ENST00000560620 DIAPH1O60610 1272 aaKnown RBP17.5■□□□□ 0.39
CTDSPL2-209ENST00000560620 IL13P35225 146 aa17.5■□□□□ 0.39
CTDSPL2-209ENST00000560620 PLEKHO1Q53GL0 409 aaPredicted RBP17.5■□□□□ 0.39
CTDSPL2-209ENST00000560620 AEBP1Q8IUX7 1158 aa17.5■□□□□ 0.39
CTDSPL2-209ENST00000560620 ANO8Q9HCE9 1232 aaPredicted RBP17.49■□□□□ 0.39
CTDSPL2-209ENST00000560620 SRCAPQ6ZRS2 3230 aa17.48■□□□□ 0.39
CTDSPL2-209ENST00000560620 HMOX1P09601 288 aa17.48■□□□□ 0.39
CTDSPL2-209ENST00000560620 PHKG2P15735 406 aa17.48■□□□□ 0.39
CTDSPL2-209ENST00000560620 ZEB1P37275 1124 aaPredicted RBP17.48■□□□□ 0.39
CTDSPL2-209ENST00000560620 CFAP53Q96M91 514 aa17.48■□□□□ 0.39
CTDSPL2-209ENST00000560620 U2SURPO15042 1029 aaKnown RBP17.47■□□□□ 0.39
CTDSPL2-209ENST00000560620 AMOTQ4VCS5 1084 aa17.47■□□□□ 0.39
CTDSPL2-209ENST00000560620 C1orf141Q5JVX7 400 aa17.47■□□□□ 0.39
CTDSPL2-209ENST00000560620 ZNF530Q6P9A1 599 aaPredicted RBP17.47■□□□□ 0.39
CTDSPL2-209ENST00000560620 KCNQ4P56696 695 aa17.46■□□□□ 0.39
CTDSPL2-209ENST00000560620 NKX1-1Q15270 411 aaPredicted RBP17.46■□□□□ 0.39
CTDSPL2-209ENST00000560620 SLC27A3Q5K4L6 730 aa17.46■□□□□ 0.39
CTDSPL2-209ENST00000560620 SLC15A2Q16348 729 aa17.45■□□□□ 0.38
CTDSPL2-209ENST00000560620 LRRC4BQ9NT99 713 aa17.45■□□□□ 0.38
CTDSPL2-209ENST00000560620 TMOD3Q9NYL9 352 aa17.45■□□□□ 0.38
CTDSPL2-209ENST00000560620 CCNL1Q9UK58 526 aaPredicted RBP17.45■□□□□ 0.38
CTDSPL2-209ENST00000560620 PLEKHG2Q9H7P9 1386 aa17.44■□□□□ 0.38
CTDSPL2-209ENST00000560620 HSP90AB1P08238 724 aaKnown RBP17.44■□□□□ 0.38
CTDSPL2-209ENST00000560620 DDX10Q13206 875 aaKnown RBP17.44■□□□□ 0.38
CTDSPL2-209ENST00000560620 ITGB4P16144 1822 aa17.44■□□□□ 0.38
CTDSPL2-209ENST00000560620 TOGARAM1Q9Y4F4 1720 aa17.44■□□□□ 0.38
CTDSPL2-209ENST00000560620 PPP2R1AP30153 589 aa17.43■□□□□ 0.38
CTDSPL2-209ENST00000560620 PIGBQ92521 554 aa17.43■□□□□ 0.38
CTDSPL2-209ENST00000560620 KDRP35968 1356 aa17.42■□□□□ 0.38
CTDSPL2-209ENST00000560620 PALLDQ8WX93 1383 aa17.42■□□□□ 0.38
CTDSPL2-209ENST00000560620 SMARCC1Q92922 1105 aaPredicted RBP17.42■□□□□ 0.38
CTDSPL2-209ENST00000560620 DCAF5Q96JK2 942 aa17.42■□□□□ 0.38
CTDSPL2-209ENST00000560620 LRP5O75197 1615 aa17.41■□□□□ 0.38
CTDSPL2-209ENST00000560620 NUDCQ9Y266 331 aa17.41■□□□□ 0.38
CTDSPL2-209ENST00000560620 LY75O60449 1722 aa17.41■□□□□ 0.38
CTDSPL2-209ENST00000560620 PDGFDQ9GZP0 370 aaPredicted RBP17.4■□□□□ 0.38
CTDSPL2-209ENST00000560620 SPON1Q9HCB6 807 aa17.4■□□□□ 0.38
CTDSPL2-209ENST00000560620 TFCP2L1Q9NZI6 479 aa17.4■□□□□ 0.38
CTDSPL2-209ENST00000560620 PPP1R1BQ9UD71 204 aaPredicted RBP17.4■□□□□ 0.38
CTDSPL2-209ENST00000560620 ZBTB7AO95365 584 aa17.39■□□□□ 0.37
CTDSPL2-209ENST00000560620 CABP4P57796 275 aa17.39■□□□□ 0.37
CTDSPL2-209ENST00000560620 ZNF827Q17R98 1081 aa17.39■□□□□ 0.37
CTDSPL2-209ENST00000560620 COL3A1P02461 1466 aaPredicted RBP17.38■□□□□ 0.37
CTDSPL2-209ENST00000560620 ERVV-2B6SEH9 535 aa17.38■□□□□ 0.37
CTDSPL2-209ENST00000560620 ASAP1Q9ULH1 1129 aa17.38■□□□□ 0.37
CTDSPL2-209ENST00000560620 PAPPAQ13219 1627 aa17.38■□□□□ 0.37
CTDSPL2-209ENST00000560620 MSH5O43196 834 aa17.37■□□□□ 0.37
CTDSPL2-209ENST00000560620 HMGB2P26583 209 aaKnown RBP17.37■□□□□ 0.37
CTDSPL2-209ENST00000560620 AKAP4Q5JQC9 854 aa17.37■□□□□ 0.37
CTDSPL2-209ENST00000560620 ATF5Q9Y2D1 282 aaPredicted RBP17.37■□□□□ 0.37
CTDSPL2-209ENST00000560620 U2AF1L5P0DN76 240 aaPredicted RBP17.36■□□□□ 0.37
CTDSPL2-209ENST00000560620 U2AF1Q01081 240 aaKnown RBP eCLIP17.36■□□□□ 0.37
CTDSPL2-209ENST00000560620 AKT1S1Q96B36 256 aa17.36■□□□□ 0.37
CTDSPL2-209ENST00000560620 MTHFSDQ2M296 383 aaKnown RBP17.35■□□□□ 0.37
CTDSPL2-209ENST00000560620 RBM42Q9BTD8 480 aaKnown RBP17.35■□□□□ 0.37
CTDSPL2-209ENST00000560620 KDM6AO15550 1401 aaPredicted RBP17.35■□□□□ 0.37
CTDSPL2-209ENST00000560620 CASZ1Q86V15 1759 aa17.35■□□□□ 0.37
CTDSPL2-209ENST00000560620 LOC102724428A0A0B4J2F2 783 aa17.34■□□□□ 0.37
CTDSPL2-209ENST00000560620 SIK1P57059 783 aa17.34■□□□□ 0.37
CTDSPL2-209ENST00000560620 NFATC2IPQ8NCF5 419 aa17.34■□□□□ 0.37
CTDSPL2-209ENST00000560620 ATG3Q9NT62 314 aa17.34■□□□□ 0.37
CTDSPL2-209ENST00000560620 C5P01031 1676 aa17.33■□□□□ 0.37
CTDSPL2-209ENST00000560620 PRKAR2BP31323 418 aa17.33■□□□□ 0.36
CTDSPL2-209ENST00000560620 ATP6V1AP38606 617 aa17.33■□□□□ 0.36
CTDSPL2-209ENST00000560620 AK7Q96M32 723 aa17.33■□□□□ 0.36
CTDSPL2-209ENST00000560620 MTFR1LQ9H019 292 aa17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms