RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 RAPGEF4Q8WZA2 1011 aa12.69□□□□□ -0.38
LDLR-211ENST00000560173 COL3A1P02461 1466 aaPredicted RBP12.68□□□□□ -0.38
LDLR-211ENST00000560173 TATP17735 454 aaPredicted RBP12.68□□□□□ -0.38
LDLR-211ENST00000560173 DDX10Q13206 875 aaKnown RBP12.68□□□□□ -0.38
LDLR-211ENST00000560173 SHANK3Q9BYB0 1731 aa12.68□□□□□ -0.38
LDLR-211ENST00000560173 IL13P35225 146 aa12.67□□□□□ -0.38
LDLR-211ENST00000560173 ZCRB1Q8TBF4 217 aaKnown RBP12.67□□□□□ -0.38
LDLR-211ENST00000560173 PARD3Q8TEW0 1356 aa12.67□□□□□ -0.38
LDLR-211ENST00000560173 SBF2Q86WG5 1849 aa12.67□□□□□ -0.38
LDLR-211ENST00000560173 PKD1L3Q7Z443 1732 aa12.66□□□□□ -0.38
LDLR-211ENST00000560173 RREB1Q92766 1687 aa12.66□□□□□ -0.38
LDLR-211ENST00000560173 PLEKHG2Q9H7P9 1386 aa12.66□□□□□ -0.38
LDLR-211ENST00000560173 PPP2R1AP30153 589 aa12.65□□□□□ -0.38
LDLR-211ENST00000560173 DDX54Q8TDD1 881 aaKnown RBP12.65□□□□□ -0.38
LDLR-211ENST00000560173 KDRP35968 1356 aa12.65□□□□□ -0.38
LDLR-211ENST00000560173 PCDH11XQ9BZA7 1347 aa12.64□□□□□ -0.39
LDLR-211ENST00000560173 PCDH11YQ9BZA8 1340 aa12.64□□□□□ -0.39
LDLR-211ENST00000560173 NHSQ6T4R5 1651 aa12.64□□□□□ -0.39
LDLR-211ENST00000560173 PTF1AQ7RTS3 328 aa12.64□□□□□ -0.39
LDLR-211ENST00000560173 AEBP1Q8IUX7 1158 aa12.64□□□□□ -0.39
LDLR-211ENST00000560173 BCL11BQ9C0K0 894 aaPredicted RBP12.64□□□□□ -0.39
LDLR-211ENST00000560173 NUP188Q5SRE5 1749 aa12.64□□□□□ -0.39
LDLR-211ENST00000560173 DIAPH1O60610 1272 aaKnown RBP12.63□□□□□ -0.39
LDLR-211ENST00000560173 APBA3O96018 575 aa12.63□□□□□ -0.39
LDLR-211ENST00000560173 EZH2Q15910 746 aaKnown RBP12.63□□□□□ -0.39
LDLR-211ENST00000560173 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.63□□□□□ -0.39
LDLR-211ENST00000560173 CYP27B1O15528 508 aa12.62□□□□□ -0.39
LDLR-211ENST00000560173 KCNQ2O43526 872 aa12.62□□□□□ -0.39
LDLR-211ENST00000560173 SULT6B1Q6IMI4 303 aa12.62□□□□□ -0.39
LDLR-211ENST00000560173 ACSBG1Q96GR2 724 aa12.62□□□□□ -0.39
LDLR-211ENST00000560173 CAMKK2Q96RR4 588 aa12.62□□□□□ -0.39
LDLR-211ENST00000560173 ZNF316A6NFI3 1004 aaPredicted RBP12.61□□□□□ -0.39
LDLR-211ENST00000560173 CFAP53Q96M91 514 aa12.61□□□□□ -0.39
LDLR-211ENST00000560173 SPG7Q9UQ90 795 aa12.61□□□□□ -0.39
LDLR-211ENST00000560173 DOT1LQ8TEK3 1739 aa12.61□□□□□ -0.39
LDLR-211ENST00000560173 RGPD3A6NKT7 1758 aaPredicted RBP12.61□□□□□ -0.39
LDLR-211ENST00000560173 RGPD4Q7Z3J3 1758 aa12.61□□□□□ -0.39
LDLR-211ENST00000560173 PLSCR1O15162 318 aa12.59□□□□□ -0.39
LDLR-211ENST00000560173 NKX1-1Q15270 411 aaPredicted RBP12.59□□□□□ -0.39
LDLR-211ENST00000560173 RALBP1Q15311 655 aa12.59□□□□□ -0.39
LDLR-211ENST00000560173 BTAF1O14981 1849 aa12.58□□□□□ -0.4
LDLR-211ENST00000560173 HMOX1P09601 288 aa12.58□□□□□ -0.4
LDLR-211ENST00000560173 PHKG2P15735 406 aa12.58□□□□□ -0.4
LDLR-211ENST00000560173 PRIM1P49642 420 aaKnown RBP12.58□□□□□ -0.4
LDLR-211ENST00000560173 AMOTQ4VCS5 1084 aa12.58□□□□□ -0.4
LDLR-211ENST00000560173 PLEKHO1Q53GL0 409 aaPredicted RBP12.58□□□□□ -0.4
LDLR-211ENST00000560173 TOGARAM1Q9Y4F4 1720 aa12.58□□□□□ -0.4
LDLR-211ENST00000560173 KAT6BQ8WYB5 2073 aa12.57□□□□□ -0.4
LDLR-211ENST00000560173 U2SURPO15042 1029 aaKnown RBP12.57□□□□□ -0.4
LDLR-211ENST00000560173 ZNF530Q6P9A1 599 aaPredicted RBP12.57□□□□□ -0.4
LDLR-211ENST00000560173 IFNL2Q8IZJ0 200 aa12.57□□□□□ -0.4
LDLR-211ENST00000560173 SYTL4Q96C24 671 aaPredicted RBP12.56□□□□□ -0.4
LDLR-211ENST00000560173 MYBBP1AQ9BQG0 1328 aaKnown RBP12.56□□□□□ -0.4
LDLR-211ENST00000560173 DCAF8L1A6NGE4 600 aa12.55□□□□□ -0.4
LDLR-211ENST00000560173 PROM2Q8N271 834 aa12.55□□□□□ -0.4
LDLR-211ENST00000560173 NUDCQ9Y266 331 aa12.55□□□□□ -0.4
LDLR-211ENST00000560173 KDM6AO15550 1401 aaPredicted RBP12.54□□□□□ -0.4
LDLR-211ENST00000560173 PRKRIP1Q9H875 184 aaPredicted RBP12.54□□□□□ -0.4
LDLR-211ENST00000560173 PPP1R1BQ9UD71 204 aaPredicted RBP12.54□□□□□ -0.4
LDLR-211ENST00000560173 HSP90AB1P08238 724 aaKnown RBP12.53□□□□□ -0.4
LDLR-211ENST00000560173 U2AF1L5P0DN76 240 aaPredicted RBP12.53□□□□□ -0.4
LDLR-211ENST00000560173 U2AF1Q01081 240 aaKnown RBP eCLIP12.53□□□□□ -0.4
LDLR-211ENST00000560173 TXNRD1Q16881 649 aa12.53□□□□□ -0.4
LDLR-211ENST00000560173 C1orf141Q5JVX7 400 aa12.53□□□□□ -0.4
LDLR-211ENST00000560173 DCAF5Q96JK2 942 aa12.53□□□□□ -0.4
LDLR-211ENST00000560173 RSPH6AQ9H0K4 717 aa12.53□□□□□ -0.4
LDLR-211ENST00000560173 SPON1Q9HCB6 807 aa12.53□□□□□ -0.4
LDLR-211ENST00000560173 UTRNP46939 3433 aa12.52□□□□□ -0.4
LDLR-211ENST00000560173 MTHFSDQ2M296 383 aaKnown RBP12.52□□□□□ -0.41
LDLR-211ENST00000560173 MPRIPQ6WCQ1 1025 aa12.52□□□□□ -0.41
LDLR-211ENST00000560173 PIGBQ92521 554 aa12.52□□□□□ -0.41
LDLR-211ENST00000560173 ITGB4P16144 1822 aa12.52□□□□□ -0.41
LDLR-211ENST00000560173 CHD4Q14839 1912 aa12.52□□□□□ -0.41
LDLR-211ENST00000560173 CASZ1Q86V15 1759 aa12.51□□□□□ -0.41
LDLR-211ENST00000560173 ERVV-2B6SEH9 535 aa12.51□□□□□ -0.41
LDLR-211ENST00000560173 PRKAR2BP31323 418 aa12.51□□□□□ -0.41
LDLR-211ENST00000560173 AKAP4Q5JQC9 854 aa12.51□□□□□ -0.41
LDLR-211ENST00000560173 IFFO2Q5TF58 517 aa12.51□□□□□ -0.41
LDLR-211ENST00000560173 NBPF14Q5TI25 921 aa12.51□□□□□ -0.41
LDLR-211ENST00000560173 PAPPAQ13219 1627 aa12.51□□□□□ -0.41
LDLR-211ENST00000560173 FCHSD2O94868 740 aa12.5□□□□□ -0.41
LDLR-211ENST00000560173 ZNF784Q8NCA9 323 aaPredicted RBP12.5□□□□□ -0.41
LDLR-211ENST00000560173 PHACTR3Q96KR7 559 aa12.5□□□□□ -0.41
LDLR-211ENST00000560173 ANO8Q9HCE9 1232 aaPredicted RBP12.5□□□□□ -0.41
LDLR-211ENST00000560173 TMOD3Q9NYL9 352 aa12.5□□□□□ -0.41
LDLR-211ENST00000560173 PALLDQ8WX93 1383 aa12.5□□□□□ -0.41
LDLR-211ENST00000560173 LY75O60449 1722 aa12.5□□□□□ -0.41
LDLR-211ENST00000560173 ADAMTS7Q9UKP4 1686 aa12.49□□□□□ -0.41
LDLR-211ENST00000560173 MRC1P22897 1456 aa12.49□□□□□ -0.41
LDLR-211ENST00000560173 SENP3-EIF4A1A0A087X0R7 540 aa12.49□□□□□ -0.41
LDLR-211ENST00000560173 SLC27A3Q5K4L6 730 aa12.49□□□□□ -0.41
LDLR-211ENST00000560173 GAS2L2Q8NHY3 880 aa12.49□□□□□ -0.41
LDLR-211ENST00000560173 LRRC4BQ9NT99 713 aa12.49□□□□□ -0.41
LDLR-211ENST00000560173 MAP3K5Q99683 1374 aa12.48□□□□□ -0.41
LDLR-211ENST00000560173 SMARCC1Q92922 1105 aaPredicted RBP12.48□□□□□ -0.41
LDLR-211ENST00000560173 SCN11AQ9UI33 1791 aa12.48□□□□□ -0.41
LDLR-211ENST00000560173 CABP4P57796 275 aa12.47□□□□□ -0.41
LDLR-211ENST00000560173 CCNL1Q9UK58 526 aaPredicted RBP12.47□□□□□ -0.41
LDLR-211ENST00000560173 ASAP1Q9ULH1 1129 aa12.47□□□□□ -0.41
LDLR-211ENST00000560173 RNMTO43148 476 aaKnown RBP12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms