RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 RGPD4Q7Z3J3 1758 aa17.31■□□□□ 0.36
SNX1-209ENST00000559961 USHBP1Q8N6Y0 703 aa17.31■□□□□ 0.36
SNX1-209ENST00000559961 NSD3Q9BZ95 1437 aa17.3■□□□□ 0.36
SNX1-209ENST00000559961 CARD14Q9BXL6 1004 aa17.3■□□□□ 0.36
SNX1-209ENST00000559961 TFCP2L1Q9NZI6 479 aa17.3■□□□□ 0.36
SNX1-209ENST00000559961 SBF2Q86WG5 1849 aa17.3■□□□□ 0.36
SNX1-209ENST00000559961 PCDH11XQ9BZA7 1347 aa17.29■□□□□ 0.36
SNX1-209ENST00000559961 PCDH11YQ9BZA8 1340 aa17.29■□□□□ 0.36
SNX1-209ENST00000559961 FAM208AQ9UK61 1670 aaKnown RBP17.28■□□□□ 0.36
SNX1-209ENST00000559961 POLD1P28340 1107 aa17.27■□□□□ 0.36
SNX1-209ENST00000559961 SPG7Q9UQ90 795 aa17.27■□□□□ 0.36
SNX1-209ENST00000559961 EMILIN1Q9Y6C2 1016 aa17.27■□□□□ 0.36
SNX1-209ENST00000559961 HSPA5P11021 654 aaKnown RBP17.26■□□□□ 0.35
SNX1-209ENST00000559961 SLC16A10Q8TF71 515 aa17.26■□□□□ 0.35
SNX1-209ENST00000559961 PDGFDQ9GZP0 370 aaPredicted RBP17.26■□□□□ 0.35
SNX1-209ENST00000559961 CCNL1Q9UK58 526 aaPredicted RBP17.26■□□□□ 0.35
SNX1-209ENST00000559961 NHSQ6T4R5 1651 aa17.26■□□□□ 0.35
SNX1-209ENST00000559961 MSH5O43196 834 aa17.25■□□□□ 0.35
SNX1-209ENST00000559961 YY1P25490 414 aa17.25■□□□□ 0.35
SNX1-209ENST00000559961 TNNT2P45379 298 aaPredicted RBP17.25■□□□□ 0.35
SNX1-209ENST00000559961 ARXQ96QS3 562 aa17.24■□□□□ 0.35
SNX1-209ENST00000559961 LRRC4BQ9NT99 713 aa17.24■□□□□ 0.35
SNX1-209ENST00000559961 WASHC2AQ641Q2 1341 aa17.23■□□□□ 0.35
SNX1-209ENST00000559961 PTGER2P43116 358 aa17.23■□□□□ 0.35
SNX1-209ENST00000559961 MPRIPQ6WCQ1 1025 aa17.23■□□□□ 0.35
SNX1-209ENST00000559961 SMARCC1Q92922 1105 aaPredicted RBP17.23■□□□□ 0.35
SNX1-209ENST00000559961 PANK3Q9H999 370 aa17.23■□□□□ 0.35
SNX1-209ENST00000559961 KAT6BQ8WYB5 2073 aa17.23■□□□□ 0.35
SNX1-209ENST00000559961 MEGF6O75095 1541 aa17.22■□□□□ 0.35
SNX1-209ENST00000559961 ZNF827Q17R98 1081 aa17.22■□□□□ 0.35
SNX1-209ENST00000559961 KLHL34Q8N239 644 aa17.21■□□□□ 0.35
SNX1-209ENST00000559961 AKT1S1Q96B36 256 aa17.21■□□□□ 0.35
SNX1-209ENST00000559961 FHDC1Q9C0D6 1143 aaPredicted RBP17.21■□□□□ 0.35
SNX1-209ENST00000559961 KNSTRNQ9Y448 316 aa17.21■□□□□ 0.35
SNX1-209ENST00000559961 MORC1Q86VD1 984 aa17.2■□□□□ 0.34
SNX1-209ENST00000559961 FLAD1Q8NFF5 587 aa17.2■□□□□ 0.34
SNX1-209ENST00000559961 SYT17Q9BSW7 474 aa17.2■□□□□ 0.34
SNX1-209ENST00000559961 POLKQ9UBT6 870 aa17.2■□□□□ 0.34
SNX1-209ENST00000559961 KCNQ4P56696 695 aa17.19■□□□□ 0.34
SNX1-209ENST00000559961 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.19■□□□□ 0.34
SNX1-209ENST00000559961 IFNL2Q8IZJ0 200 aa17.18■□□□□ 0.34
SNX1-209ENST00000559961 EYA1Q99502 592 aa17.18■□□□□ 0.34
SNX1-209ENST00000559961 BTAF1O14981 1849 aa17.17■□□□□ 0.34
SNX1-209ENST00000559961 KIF20BQ96Q89 1820 aa17.17■□□□□ 0.34
SNX1-209ENST00000559961 CYP27B1O15528 508 aa17.17■□□□□ 0.34
SNX1-209ENST00000559961 TMOD3Q9NYL9 352 aa17.17■□□□□ 0.34
SNX1-209ENST00000559961 NSD2O96028 1365 aa17.16■□□□□ 0.34
SNX1-209ENST00000559961 HSP90AB1P08238 724 aaKnown RBP17.15■□□□□ 0.34
SNX1-209ENST00000559961 GPR162Q16538 588 aa17.15■□□□□ 0.34
SNX1-209ENST00000559961 AK7Q96M32 723 aa17.15■□□□□ 0.34
SNX1-209ENST00000559961 PNPLA7Q6ZV29 1317 aa17.15■□□□□ 0.34
SNX1-209ENST00000559961 PALLDQ8WX93 1383 aa17.15■□□□□ 0.34
SNX1-209ENST00000559961 EIF4A2Q14240 407 aaKnown RBP17.14■□□□□ 0.33
SNX1-209ENST00000559961 NKX1-1Q15270 411 aaPredicted RBP17.14■□□□□ 0.33
SNX1-209ENST00000559961 PLEKHO1Q53GL0 409 aaPredicted RBP17.14■□□□□ 0.33
SNX1-209ENST00000559961 SGIP1Q9BQI5 828 aa17.14■□□□□ 0.33
SNX1-209ENST00000559961 CASZ1Q86V15 1759 aa17.14■□□□□ 0.33
SNX1-209ENST00000559961 AMOTQ4VCS5 1084 aa17.12■□□□□ 0.33
SNX1-209ENST00000559961 PELP1Q8IZL8 1130 aaKnown RBP17.12■□□□□ 0.33
SNX1-209ENST00000559961 PIGBQ92521 554 aa17.12■□□□□ 0.33
SNX1-209ENST00000559961 PHKG2P15735 406 aa17.11■□□□□ 0.33
SNX1-209ENST00000559961 C1orf141Q5JVX7 400 aa17.1■□□□□ 0.33
SNX1-209ENST00000559961 COL23A1Q86Y22 540 aaPredicted RBP17.1■□□□□ 0.33
SNX1-209ENST00000559961 MYOM1P52179 1685 aa17.1■□□□□ 0.33
SNX1-209ENST00000559961 RGPD2P0DJD1 1756 aa17.1■□□□□ 0.33
SNX1-209ENST00000559961 MAP3K5Q99683 1374 aa17.09■□□□□ 0.33
SNX1-209ENST00000559961 DOT1LQ8TEK3 1739 aa17.09■□□□□ 0.33
SNX1-209ENST00000559961 PAPPAQ13219 1627 aa17.08■□□□□ 0.32
SNX1-209ENST00000559961 PLEKHG2Q9H7P9 1386 aa17.08■□□□□ 0.32
SNX1-209ENST00000559961 LOC102724428A0A0B4J2F2 783 aa17.08■□□□□ 0.32
SNX1-209ENST00000559961 ERVV-2B6SEH9 535 aa17.08■□□□□ 0.32
SNX1-209ENST00000559961 ATP6V1AP38606 617 aa17.08■□□□□ 0.32
SNX1-209ENST00000559961 SIK1P57059 783 aa17.08■□□□□ 0.32
SNX1-209ENST00000559961 DCAF5Q96JK2 942 aa17.08■□□□□ 0.32
SNX1-209ENST00000559961 CABP4P57796 275 aa17.07■□□□□ 0.32
SNX1-209ENST00000559961 ZNF530Q6P9A1 599 aaPredicted RBP17.07■□□□□ 0.32
SNX1-209ENST00000559961 IGSF1Q8N6C5 1336 aa17.06■□□□□ 0.32
SNX1-209ENST00000559961 PHF14O94880 888 aa17.06■□□□□ 0.32
SNX1-209ENST00000559961 MTHFSP49914 203 aa17.06■□□□□ 0.32
SNX1-209ENST00000559961 MSL1Q68DK7 614 aa17.06■□□□□ 0.32
SNX1-209ENST00000559961 NCAPD2Q15021 1401 aa17.05■□□□□ 0.32
SNX1-209ENST00000559961 GRIN3BO60391 1043 aa17.05■□□□□ 0.32
SNX1-209ENST00000559961 RBM42Q9BTD8 480 aaKnown RBP17.05■□□□□ 0.32
SNX1-209ENST00000559961 ASAP1Q9ULH1 1129 aa17.05■□□□□ 0.32
SNX1-209ENST00000559961 SSFA2P28290 1259 aa17.04■□□□□ 0.32
SNX1-209ENST00000559961 SULT6B1Q6IMI4 303 aa17.04■□□□□ 0.32
SNX1-209ENST00000559961 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.03■□□□□ 0.32
SNX1-209ENST00000559961 GNPATO15228 680 aa17.03■□□□□ 0.32
SNX1-209ENST00000559961 KIF7Q2M1P5 1343 aa17.02■□□□□ 0.32
SNX1-209ENST00000559961 ATG3Q9NT62 314 aa17.02■□□□□ 0.32
SNX1-209ENST00000559961 CD2APQ9Y5K6 639 aa17.02■□□□□ 0.32
SNX1-209ENST00000559961 MAP2P11137 1827 aaKnown RBP17.02■□□□□ 0.31
SNX1-209ENST00000559961 SHANK3Q9BYB0 1731 aa17.01■□□□□ 0.31
SNX1-209ENST00000559961 RTCBQ9Y3I0 505 aaKnown RBP17.01■□□□□ 0.31
SNX1-209ENST00000559961 LY75O60449 1722 aa17.01■□□□□ 0.31
SNX1-209ENST00000559961 CC2D1BQ5T0F9 858 aaKnown RBP17■□□□□ 0.31
SNX1-209ENST00000559961 TRAPPC3LQ5T215 181 aa17■□□□□ 0.31
SNX1-209ENST00000559961 LINC00116Q8NCU8 138 aa17■□□□□ 0.31
SNX1-209ENST00000559961 AMER1Q5JTC6 1135 aaPredicted RBP16.99■□□□□ 0.31
SNX1-209ENST00000559961 DIAPH1O60610 1272 aaKnown RBP16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms