RNA–Protein interactions for RNA: ENST00000559658.5

CHRNA3-206, Transcript of cholinergic receptor nicotinic alpha 3 subunit, humanhuman

TSL 2

Gene CHRNA3, Length 1,889 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA3-206ENST00000559658 FANCIQ9NVI1 1328 aa22.65■■□□□ 1.22
CHRNA3-206ENST00000559658 TOM1L2Q6ZVM7 507 aa22.64■■□□□ 1.21
CHRNA3-206ENST00000559658 PKD1L3Q7Z443 1732 aa22.63■■□□□ 1.21
CHRNA3-206ENST00000559658 GAS2L2Q8NHY3 880 aa22.63■■□□□ 1.21
CHRNA3-206ENST00000559658 MAP3K5Q99683 1374 aa22.62■■□□□ 1.21
CHRNA3-206ENST00000559658 PARP4Q9UKK3 1724 aaKnown RBP22.62■■□□□ 1.21
CHRNA3-206ENST00000559658 LAS1LQ9Y4W2 734 aaKnown RBP22.61■■□□□ 1.21
CHRNA3-206ENST00000559658 LMOD3Q0VAK6 560 aa22.6■■□□□ 1.21
CHRNA3-206ENST00000559658 CRB1P82279 1406 aa22.6■■□□□ 1.21
CHRNA3-206ENST00000559658 SHANK3Q9BYB0 1731 aa22.6■■□□□ 1.21
CHRNA3-206ENST00000559658 EVA1CP58658 441 aa22.6■■□□□ 1.21
CHRNA3-206ENST00000559658 IRX6P78412 446 aaPredicted RBP22.6■■□□□ 1.21
CHRNA3-206ENST00000559658 USP35Q9P2H5 1018 aa22.6■■□□□ 1.21
CHRNA3-206ENST00000559658 RCAN3Q9UKA8 241 aa22.6■■□□□ 1.21
CHRNA3-206ENST00000559658 IL16Q14005 1332 aa22.59■■□□□ 1.21
CHRNA3-206ENST00000559658 ZNF530Q6P9A1 599 aaPredicted RBP22.59■■□□□ 1.21
CHRNA3-206ENST00000559658 RAPGEF4Q8WZA2 1011 aa22.58■■□□□ 1.21
CHRNA3-206ENST00000559658 OVOS2A0A0G2JMS6 1433 aa22.58■■□□□ 1.2
CHRNA3-206ENST00000559658 GNAT3A8MTJ3 354 aa22.58■■□□□ 1.2
CHRNA3-206ENST00000559658 WNK3Q9BYP7 1800 aa22.58■■□□□ 1.2
CHRNA3-206ENST00000559658 NWD2Q9ULI1 1742 aa22.57■■□□□ 1.2
CHRNA3-206ENST00000559658 SLIT2O94813 1529 aa22.57■■□□□ 1.2
CHRNA3-206ENST00000559658 ZNF853P0CG23 659 aa22.57■■□□□ 1.2
CHRNA3-206ENST00000559658 IL17REQ8NFR9 667 aa22.57■■□□□ 1.2
CHRNA3-206ENST00000559658 PLEKHO1Q53GL0 409 aaPredicted RBP22.56■■□□□ 1.2
CHRNA3-206ENST00000559658 CARD10Q9BWT7 1032 aa22.56■■□□□ 1.2
CHRNA3-206ENST00000559658 MYH16Q9H6N6 1097 aa22.56■■□□□ 1.2
CHRNA3-206ENST00000559658 MBIPQ9NS73 344 aa22.56■■□□□ 1.2
CHRNA3-206ENST00000559658 TATP17735 454 aaPredicted RBP22.56■■□□□ 1.2
CHRNA3-206ENST00000559658 EXOSC9Q06265 439 aaKnown RBP22.55■■□□□ 1.2
CHRNA3-206ENST00000559658 LGR6Q9HBX8 967 aa22.55■■□□□ 1.2
CHRNA3-206ENST00000559658 ADAMTS7Q9UKP4 1686 aa22.55■■□□□ 1.2
CHRNA3-206ENST00000559658 RTF1Q92541 710 aaKnown RBP22.54■■□□□ 1.2
CHRNA3-206ENST00000559658 IFT57Q9NWB7 429 aa22.54■■□□□ 1.2
CHRNA3-206ENST00000559658 MIS18AQ9NYP9 233 aa22.54■■□□□ 1.2
CHRNA3-206ENST00000559658 AMOTQ4VCS5 1084 aa22.54■■□□□ 1.2
CHRNA3-206ENST00000559658 MPRIPQ6WCQ1 1025 aa22.54■■□□□ 1.2
CHRNA3-206ENST00000559658 RNF123Q5XPI4 1314 aa22.53■■□□□ 1.2
CHRNA3-206ENST00000559658 CFAP44Q96MT7 982 aa22.53■■□□□ 1.2
CHRNA3-206ENST00000559658 C8orf37Q96NL8 207 aa22.53■■□□□ 1.2
CHRNA3-206ENST00000559658 CEMIPQ8WUJ3 1361 aa22.52■■□□□ 1.2
CHRNA3-206ENST00000559658 AKAP4Q5JQC9 854 aa22.52■■□□□ 1.2
CHRNA3-206ENST00000559658 KDM6AO15550 1401 aaPredicted RBP22.52■■□□□ 1.2
CHRNA3-206ENST00000559658 SCN11AQ9UI33 1791 aa22.51■■□□□ 1.19
CHRNA3-206ENST00000559658 CYP27B1O15528 508 aa22.51■■□□□ 1.19
CHRNA3-206ENST00000559658 GNAI1P63096 354 aa22.51■■□□□ 1.19
CHRNA3-206ENST00000559658 SIPA1L3O60292 1781 aaPredicted RBP22.51■■□□□ 1.19
CHRNA3-206ENST00000559658 DISP2A7MBM2 1401 aa22.51■■□□□ 1.19
CHRNA3-206ENST00000559658 SPATA31A6Q5VVP1 1343 aa22.5■■□□□ 1.19
CHRNA3-206ENST00000559658 HTATSF1O43719 755 aaKnown RBP22.5■■□□□ 1.19
CHRNA3-206ENST00000559658 CALD1Q05682 793 aaKnown RBP22.5■■□□□ 1.19
CHRNA3-206ENST00000559658 FKBP8Q14318 412 aa22.5■■□□□ 1.19
CHRNA3-206ENST00000559658 KRT24Q2M2I5 525 aa22.5■■□□□ 1.19
CHRNA3-206ENST00000559658 BCL9LQ86UU0 1499 aa22.5■■□□□ 1.19
CHRNA3-206ENST00000559658 PLIN1O60240 522 aa22.49■■□□□ 1.19
CHRNA3-206ENST00000559658 BCAR3O75815 825 aa22.49■■□□□ 1.19
CHRNA3-206ENST00000559658 IL2RBP14784 551 aa22.49■■□□□ 1.19
CHRNA3-206ENST00000559658 C1orf141Q5JVX7 400 aa22.49■■□□□ 1.19
CHRNA3-206ENST00000559658 TSPYL6Q8N831 410 aa22.49■■□□□ 1.19
CHRNA3-206ENST00000559658 PHKG2P15735 406 aa22.49■■□□□ 1.19
CHRNA3-206ENST00000559658 CHL1O00533 1208 aa22.48■■□□□ 1.19
CHRNA3-206ENST00000559658 RRP1P56182 461 aaKnown RBP22.48■■□□□ 1.19
CHRNA3-206ENST00000559658 BCL2L13Q9BXK5 485 aa22.47■■□□□ 1.19
CHRNA3-206ENST00000559658 SPG7Q9UQ90 795 aa22.47■■□□□ 1.19
CHRNA3-206ENST00000559658 KDM3BQ7LBC6 1761 aa22.47■■□□□ 1.19
CHRNA3-206ENST00000559658 RNMTO43148 476 aaKnown RBP22.47■■□□□ 1.19
CHRNA3-206ENST00000559658 C8orf58Q8NAV2 365 aa22.46■■□□□ 1.19
CHRNA3-206ENST00000559658 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.46■■□□□ 1.19
CHRNA3-206ENST00000559658 PLEKHG2Q9H7P9 1386 aa22.45■■□□□ 1.19
CHRNA3-206ENST00000559658 ELL2O00472 640 aaPredicted RBP22.45■■□□□ 1.19
CHRNA3-206ENST00000559658 NGLY1Q96IV0 654 aa22.45■■□□□ 1.19
CHRNA3-206ENST00000559658 TOGARAM1Q9Y4F4 1720 aa22.45■■□□□ 1.18
CHRNA3-206ENST00000559658 SPATA31A1Q5TZJ5 1347 aa22.45■■□□□ 1.18
CHRNA3-206ENST00000559658 RARSP54136 660 aaKnown RBP22.45■■□□□ 1.18
CHRNA3-206ENST00000559658 ZCRB1Q8TBF4 217 aaKnown RBP22.44■■□□□ 1.18
CHRNA3-206ENST00000559658 TSPYL4Q9UJ04 414 aa22.44■■□□□ 1.18
CHRNA3-206ENST00000559658 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.43■■□□□ 1.18
CHRNA3-206ENST00000559658 IFNL2Q8IZJ0 200 aa22.43■■□□□ 1.18
CHRNA3-206ENST00000559658 SPATA31A5Q5VU36 1347 aa22.42■■□□□ 1.18
CHRNA3-206ENST00000559658 SPATA31A7Q8IWB4 1347 aa22.42■■□□□ 1.18
CHRNA3-206ENST00000559658 NEFLP07196 543 aa22.42■■□□□ 1.18
CHRNA3-206ENST00000559658 UNC5CLQ8IV45 518 aa22.42■■□□□ 1.18
CHRNA3-206ENST00000559658 PCDH11XQ9BZA7 1347 aa22.42■■□□□ 1.18
CHRNA3-206ENST00000559658 PCDH11YQ9BZA8 1340 aa22.42■■□□□ 1.18
CHRNA3-206ENST00000559658 C20orf194Q5TEA3 1177 aa22.41■■□□□ 1.18
CHRNA3-206ENST00000559658 MRC1P22897 1456 aa22.41■■□□□ 1.18
CHRNA3-206ENST00000559658 KCNQ3O43525 872 aa22.41■■□□□ 1.18
CHRNA3-206ENST00000559658 FNBP4Q8N3X1 1017 aaPredicted RBP22.41■■□□□ 1.18
CHRNA3-206ENST00000559658 DDX54Q8TDD1 881 aaKnown RBP22.41■■□□□ 1.18
CHRNA3-206ENST00000559658 TAF7Q15545 349 aaPredicted RBP22.4■■□□□ 1.18
CHRNA3-206ENST00000559658 CCDC9Q9Y3X0 531 aaKnown RBP22.4■■□□□ 1.18
CHRNA3-206ENST00000559658 TCERG1O14776 1098 aaKnown RBP22.39■■□□□ 1.18
CHRNA3-206ENST00000559658 VAMP4O75379 141 aa22.39■■□□□ 1.18
CHRNA3-206ENST00000559658 SSH1Q8WYL5 1049 aa22.39■■□□□ 1.18
CHRNA3-206ENST00000559658 TEFQ10587 303 aa22.39■■□□□ 1.17
CHRNA3-206ENST00000559658 TWISTNBQ3B726 338 aaPredicted RBP22.39■■□□□ 1.17
CHRNA3-206ENST00000559658 MEX3CQ5U5Q3 659 aaKnown RBP22.39■■□□□ 1.17
CHRNA3-206ENST00000559658 TNNQ9UQP3 1299 aa22.38■■□□□ 1.17
CHRNA3-206ENST00000559658 USP21Q9UK80 565 aa22.37■■□□□ 1.17
CHRNA3-206ENST00000559658 TNS2Q63HR2 1409 aa22.37■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms