RNA–Protein interactions for RNA: ENST00000559556.5

TPM1-220, Transcript of tropomyosin 1, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene TPM1, Length 977 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-220ENST00000559556 USP47Q96K76 1375 aa18.42■□□□□ 0.54
TPM1-220ENST00000559556 LRRC4BQ9NT99 713 aa18.42■□□□□ 0.54
TPM1-220ENST00000559556 NSD2O96028 1365 aa18.42■□□□□ 0.54
TPM1-220ENST00000559556 MAP3K5Q99683 1374 aa18.42■□□□□ 0.54
TPM1-220ENST00000559556 ZNF827Q17R98 1081 aa18.41■□□□□ 0.54
TPM1-220ENST00000559556 LTV1Q96GA3 475 aaPredicted RBP18.41■□□□□ 0.54
TPM1-220ENST00000559556 FHDC1Q9C0D6 1143 aaPredicted RBP18.4■□□□□ 0.54
TPM1-220ENST00000559556 AMPHP49418 695 aa18.39■□□□□ 0.53
TPM1-220ENST00000559556 SLC27A3Q5K4L6 730 aa18.39■□□□□ 0.53
TPM1-220ENST00000559556 DDX54Q8TDD1 881 aaKnown RBP18.39■□□□□ 0.53
TPM1-220ENST00000559556 SMG6Q86US8 1419 aaKnown RBP18.39■□□□□ 0.53
TPM1-220ENST00000559556 FBLN1P23142 703 aa18.38■□□□□ 0.53
TPM1-220ENST00000559556 AKT1S1Q96B36 256 aa18.38■□□□□ 0.53
TPM1-220ENST00000559556 SYT17Q9BSW7 474 aa18.38■□□□□ 0.53
TPM1-220ENST00000559556 VIRMAQ69YN4 1812 aaKnown RBP18.37■□□□□ 0.53
TPM1-220ENST00000559556 TMF1P82094 1093 aa18.37■□□□□ 0.53
TPM1-220ENST00000559556 FYB1O15117 783 aa18.36■□□□□ 0.53
TPM1-220ENST00000559556 CGNL1Q0VF96 1302 aa18.36■□□□□ 0.53
TPM1-220ENST00000559556 KIF24Q5T7B8 1368 aa18.36■□□□□ 0.53
TPM1-220ENST00000559556 C4BP0C0L5 1744 aa18.35■□□□□ 0.53
TPM1-220ENST00000559556 INSRP06213 1382 aa18.35■□□□□ 0.53
TPM1-220ENST00000559556 RRS1Q15050 365 aaKnown RBP18.35■□□□□ 0.53
TPM1-220ENST00000559556 ZCRB1Q8TBF4 217 aaKnown RBP18.35■□□□□ 0.53
TPM1-220ENST00000559556 ARXQ96QS3 562 aa18.35■□□□□ 0.53
TPM1-220ENST00000559556 FLT4P35916 1363 aa18.34■□□□□ 0.53
TPM1-220ENST00000559556 PNPLA7Q6ZV29 1317 aa18.34■□□□□ 0.53
TPM1-220ENST00000559556 PRIM1P49642 420 aaKnown RBP18.34■□□□□ 0.53
TPM1-220ENST00000559556 SLC16A10Q8TF71 515 aa18.34■□□□□ 0.53
TPM1-220ENST00000559556 GGNBP2Q9H3C7 697 aa18.34■□□□□ 0.53
TPM1-220ENST00000559556 NBPF6Q5VWK0 638 aa18.33■□□□□ 0.52
TPM1-220ENST00000559556 SYTL4Q96C24 671 aaPredicted RBP18.33■□□□□ 0.52
TPM1-220ENST00000559556 NBPF4Q96M43 638 aa18.33■□□□□ 0.52
TPM1-220ENST00000559556 NCAPD2Q15021 1401 aa18.32■□□□□ 0.52
TPM1-220ENST00000559556 CDCA8Q53HL2 280 aa18.31■□□□□ 0.52
TPM1-220ENST00000559556 TRIM26Q12899 539 aaPredicted RBP18.3■□□□□ 0.52
TPM1-220ENST00000559556 USHBP1Q8N6Y0 703 aa18.3■□□□□ 0.52
TPM1-220ENST00000559556 NSD3Q9BZ95 1437 aa18.3■□□□□ 0.52
TPM1-220ENST00000559556 KCNQ4P56696 695 aa18.29■□□□□ 0.52
TPM1-220ENST00000559556 RAPGEF4Q8WZA2 1011 aa18.29■□□□□ 0.52
TPM1-220ENST00000559556 ZNF831Q5JPB2 1677 aa18.28■□□□□ 0.52
TPM1-220ENST00000559556 PCDH11XQ9BZA7 1347 aa18.28■□□□□ 0.52
TPM1-220ENST00000559556 PCDH11YQ9BZA8 1340 aa18.28■□□□□ 0.52
TPM1-220ENST00000559556 TFCP2L1Q9NZI6 479 aa18.28■□□□□ 0.52
TPM1-220ENST00000559556 COL5A3P25940 1745 aaPredicted RBP18.27■□□□□ 0.52
TPM1-220ENST00000559556 TATP17735 454 aaPredicted RBP18.27■□□□□ 0.52
TPM1-220ENST00000559556 HSP90AB2PQ58FF8 381 aa18.27■□□□□ 0.52
TPM1-220ENST00000559556 CCNL1Q9UK58 526 aaPredicted RBP18.27■□□□□ 0.52
TPM1-220ENST00000559556 KIF13BQ9NQT8 1826 aa18.27■□□□□ 0.52
TPM1-220ENST00000559556 CEP350Q5VT06 3117 aa18.27■□□□□ 0.51
TPM1-220ENST00000559556 POLD1P28340 1107 aa18.26■□□□□ 0.51
TPM1-220ENST00000559556 ZNF784Q8NCA9 323 aaPredicted RBP18.26■□□□□ 0.51
TPM1-220ENST00000559556 CARD14Q9BXL6 1004 aa18.25■□□□□ 0.51
TPM1-220ENST00000559556 EMILIN1Q9Y6C2 1016 aa18.23■□□□□ 0.51
TPM1-220ENST00000559556 MYH14Q7Z406 1995 aaKnown RBP18.22■□□□□ 0.51
TPM1-220ENST00000559556 PALLDQ8WX93 1383 aa18.22■□□□□ 0.51
TPM1-220ENST00000559556 CYP27B1O15528 508 aa18.22■□□□□ 0.51
TPM1-220ENST00000559556 SCN11AQ9UI33 1791 aa18.22■□□□□ 0.51
TPM1-220ENST00000559556 C4AP0C0L4 1744 aa18.21■□□□□ 0.51
TPM1-220ENST00000559556 BRCA1P38398 1863 aaKnown RBP18.21■□□□□ 0.51
TPM1-220ENST00000559556 TIMELESSQ9UNS1 1208 aa18.21■□□□□ 0.51
TPM1-220ENST00000559556 COL23A1Q86Y22 540 aaPredicted RBP18.2■□□□□ 0.5
TPM1-220ENST00000559556 KIAA1551Q9HCM1 1747 aa18.2■□□□□ 0.5
TPM1-220ENST00000559556 CLSPNQ9HAW4 1339 aa18.2■□□□□ 0.5
TPM1-220ENST00000559556 HMGB2P26583 209 aaKnown RBP18.19■□□□□ 0.5
TPM1-220ENST00000559556 GPR162Q16538 588 aa18.19■□□□□ 0.5
TPM1-220ENST00000559556 KLHL34Q8N239 644 aa18.19■□□□□ 0.5
TPM1-220ENST00000559556 N4BP2Q86UW6 1770 aaPredicted RBP18.18■□□□□ 0.5
TPM1-220ENST00000559556 NLGN2Q8NFZ4 835 aa18.18■□□□□ 0.5
TPM1-220ENST00000559556 WASHC2AQ641Q2 1341 aa18.18■□□□□ 0.5
TPM1-220ENST00000559556 PLEKHG2Q9H7P9 1386 aa18.17■□□□□ 0.5
TPM1-220ENST00000559556 MPRIPQ6WCQ1 1025 aa18.17■□□□□ 0.5
TPM1-220ENST00000559556 CICQ96RK0 1608 aaPredicted RBP18.16■□□□□ 0.5
TPM1-220ENST00000559556 NKX1-1Q15270 411 aaPredicted RBP18.16■□□□□ 0.5
TPM1-220ENST00000559556 SMARCC1Q92922 1105 aaPredicted RBP18.16■□□□□ 0.5
TPM1-220ENST00000559556 MSH5O43196 834 aa18.15■□□□□ 0.5
TPM1-220ENST00000559556 FLAD1Q8NFF5 587 aa18.15■□□□□ 0.5
TPM1-220ENST00000559556 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.14■□□□□ 0.495e-8■■■■□ 19.9
TPM1-220ENST00000559556 SPG7Q9UQ90 795 aa18.14■□□□□ 0.49
TPM1-220ENST00000559556 ARFGEF1Q9Y6D6 1849 aa18.14■□□□□ 0.49
TPM1-220ENST00000559556 PPM1GO15355 546 aaPredicted RBP18.13■□□□□ 0.49
TPM1-220ENST00000559556 MSL1Q68DK7 614 aa18.13■□□□□ 0.49
TPM1-220ENST00000559556 EYA1Q99502 592 aa18.13■□□□□ 0.49
TPM1-220ENST00000559556 PELP1Q8IZL8 1130 aaKnown RBP18.12■□□□□ 0.49
TPM1-220ENST00000559556 PIGBQ92521 554 aa18.12■□□□□ 0.49
TPM1-220ENST00000559556 POLKQ9UBT6 870 aa18.12■□□□□ 0.49
TPM1-220ENST00000559556 TJP1Q07157 1748 aa18.12■□□□□ 0.49
TPM1-220ENST00000559556 YBX3P16989 372 aaKnown RBP eCLIP18.11■□□□□ 0.49
TPM1-220ENST00000559556 AMIGO3Q86WK7 504 aa18.1■□□□□ 0.49
TPM1-220ENST00000559556 AK7Q96M32 723 aa18.1■□□□□ 0.49
TPM1-220ENST00000559556 GRIN3BO60391 1043 aa18.09■□□□□ 0.49
TPM1-220ENST00000559556 CD2APQ9Y5K6 639 aa18.09■□□□□ 0.49
TPM1-220ENST00000559556 LOC102724428A0A0B4J2F2 783 aa18.08■□□□□ 0.48
TPM1-220ENST00000559556 PHKG2P15735 406 aa18.08■□□□□ 0.48
TPM1-220ENST00000559556 SIK1P57059 783 aa18.08■□□□□ 0.48
TPM1-220ENST00000559556 C1QTNF8P60827 252 aa18.08■□□□□ 0.48
TPM1-220ENST00000559556 EIF4A2Q14240 407 aaKnown RBP18.08■□□□□ 0.48
TPM1-220ENST00000559556 IFNL2Q8IZJ0 200 aa18.08■□□□□ 0.48
TPM1-220ENST00000559556 TMOD3Q9NYL9 352 aa18.08■□□□□ 0.48
TPM1-220ENST00000559556 KDRP35968 1356 aa18.07■□□□□ 0.48
TPM1-220ENST00000559556 IGSF1Q8N6C5 1336 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms