RNA–Protein interactions for RNA: ENST00000559494.1

TSPAN3-207, Transcript of tetraspanin 3, humanhuman

TSL 5 BASIC

Gene TSPAN3, Length 1,326 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-207ENST00000559494 PRKRIP1Q9H875 184 aaPredicted RBP27.3■■□□□ 1.96
TSPAN3-207ENST00000559494 DDX54Q8TDD1 881 aaKnown RBP27.29■■□□□ 1.96
TSPAN3-207ENST00000559494 RGPD1P0DJD0 1748 aa27.28■■□□□ 1.96
TSPAN3-207ENST00000559494 HMOX1P09601 288 aa27.25■■□□□ 1.95
TSPAN3-207ENST00000559494 MYBBP1AQ9BQG0 1328 aaKnown RBP27.25■■□□□ 1.95
TSPAN3-207ENST00000559494 KDRP35968 1356 aa27.25■■□□□ 1.95
TSPAN3-207ENST00000559494 U2SURPO15042 1029 aaKnown RBP27.24■■□□□ 1.95
TSPAN3-207ENST00000559494 TRIM37O94972 964 aa27.24■■□□□ 1.95
TSPAN3-207ENST00000559494 CCDC125Q86Z20 511 aa27.24■■□□□ 1.95
TSPAN3-207ENST00000559494 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP27.23■■□□□ 1.95
TSPAN3-207ENST00000559494 BCL9O00512 1426 aa27.22■■□□□ 1.95
TSPAN3-207ENST00000559494 SPG7Q9UQ90 795 aa27.22■■□□□ 1.95
TSPAN3-207ENST00000559494 KAT6BQ8WYB5 2073 aa27.22■■□□□ 1.95
TSPAN3-207ENST00000559494 SHANK3Q9BYB0 1731 aa27.22■■□□□ 1.95
TSPAN3-207ENST00000559494 CYP27B1O15528 508 aa27.21■■□□□ 1.95
TSPAN3-207ENST00000559494 NUDCQ9Y266 331 aa27.21■■□□□ 1.95
TSPAN3-207ENST00000559494 SBF2Q86WG5 1849 aa27.19■■□□□ 1.94
TSPAN3-207ENST00000559494 PCDH11XQ9BZA7 1347 aa27.19■■□□□ 1.94
TSPAN3-207ENST00000559494 PCDH11YQ9BZA8 1340 aa27.19■■□□□ 1.94
TSPAN3-207ENST00000559494 PLEKHO1Q53GL0 409 aaPredicted RBP27.18■■□□□ 1.94
TSPAN3-207ENST00000559494 PTF1AQ7RTS3 328 aa27.18■■□□□ 1.94
TSPAN3-207ENST00000559494 PKD1L3Q7Z443 1732 aa27.18■■□□□ 1.94
TSPAN3-207ENST00000559494 PLEKHG2Q9H7P9 1386 aa27.17■■□□□ 1.94
TSPAN3-207ENST00000559494 KCNQ2O43526 872 aa27.16■■□□□ 1.94
TSPAN3-207ENST00000559494 ACSBG1Q96GR2 724 aa27.16■■□□□ 1.94
TSPAN3-207ENST00000559494 U2AF1L5P0DN76 240 aaPredicted RBP27.16■■□□□ 1.94
TSPAN3-207ENST00000559494 U2AF1Q01081 240 aaKnown RBP eCLIP27.16■■□□□ 1.94
TSPAN3-207ENST00000559494 SF3B2Q13435 895 aaKnown RBP27.16■■□□□ 1.94
TSPAN3-207ENST00000559494 AMOTQ4VCS5 1084 aa27.16■■□□□ 1.94
TSPAN3-207ENST00000559494 DEFB132Q7Z7B7 95 aa27.15■■□□□ 1.94
TSPAN3-207ENST00000559494 BCL11BQ9C0K0 894 aaPredicted RBP27.15■■□□□ 1.94
TSPAN3-207ENST00000559494 ANP32CO43423 234 aa27.14■■□□□ 1.93
TSPAN3-207ENST00000559494 PHKG2P15735 406 aa27.14■■□□□ 1.93
TSPAN3-207ENST00000559494 IFNL2Q8IZJ0 200 aa27.14■■□□□ 1.93
TSPAN3-207ENST00000559494 NKX1-1Q15270 411 aaPredicted RBP27.13■■□□□ 1.93
TSPAN3-207ENST00000559494 RSPH6AQ9H0K4 717 aa27.13■■□□□ 1.93
TSPAN3-207ENST00000559494 APBA3O96018 575 aa27.12■■□□□ 1.93
TSPAN3-207ENST00000559494 ZNF530Q6P9A1 599 aaPredicted RBP27.12■■□□□ 1.93
TSPAN3-207ENST00000559494 FCHSD2O94868 740 aa27.11■■□□□ 1.93
TSPAN3-207ENST00000559494 TNS1Q9HBL0 1735 aaKnown RBP27.1■■□□□ 1.93
TSPAN3-207ENST00000559494 PRIM1P49642 420 aaKnown RBP27.1■■□□□ 1.93
TSPAN3-207ENST00000559494 PRKAR2BP31323 418 aa27.09■■□□□ 1.93
TSPAN3-207ENST00000559494 BAG6P46379 1132 aa27.09■■□□□ 1.93
TSPAN3-207ENST00000559494 MTHFSDQ2M296 383 aaKnown RBP27.09■■□□□ 1.93
TSPAN3-207ENST00000559494 EN1Q05925 392 aaPredicted RBP27.08■■□□□ 1.93
TSPAN3-207ENST00000559494 PHACTR3Q96KR7 559 aa27.07■■□□□ 1.92
TSPAN3-207ENST00000559494 CCDC184Q52MB2 194 aa27.06■■□□□ 1.92
TSPAN3-207ENST00000559494 NHSQ6T4R5 1651 aa27.05■■□□□ 1.92
TSPAN3-207ENST00000559494 SYTL4Q96C24 671 aaPredicted RBP27.05■■□□□ 1.92
TSPAN3-207ENST00000559494 CAMKK2Q96RR4 588 aa27.05■■□□□ 1.92
TSPAN3-207ENST00000559494 C1orf141Q5JVX7 400 aa27.04■■□□□ 1.92
TSPAN3-207ENST00000559494 EZH2Q15910 746 aaKnown RBP27.03■■□□□ 1.92
TSPAN3-207ENST00000559494 AKAP4Q5JQC9 854 aa27.03■■□□□ 1.92
TSPAN3-207ENST00000559494 DOT1LQ8TEK3 1739 aa27.03■■□□□ 1.92
TSPAN3-207ENST00000559494 PLSCR1O15162 318 aa27.02■■□□□ 1.92
TSPAN3-207ENST00000559494 HSP90AB1P08238 724 aaKnown RBP27.02■■□□□ 1.92
TSPAN3-207ENST00000559494 MPRIPQ6WCQ1 1025 aa27.01■■□□□ 1.91
TSPAN3-207ENST00000559494 DCAF5Q96JK2 942 aa27.01■■□□□ 1.91
TSPAN3-207ENST00000559494 PLEKHF1Q96S99 279 aa27■■□□□ 1.91
TSPAN3-207ENST00000559494 GAS2L2Q8NHY3 880 aa26.99■■□□□ 1.91
TSPAN3-207ENST00000559494 TOGARAM1Q9Y4F4 1720 aa26.99■■□□□ 1.91
TSPAN3-207ENST00000559494 BTAF1O14981 1849 aa26.98■■□□□ 1.91
TSPAN3-207ENST00000559494 KDM6AO15550 1401 aaPredicted RBP26.98■■□□□ 1.91
TSPAN3-207ENST00000559494 LGR6Q9HBX8 967 aa26.98■■□□□ 1.91
TSPAN3-207ENST00000559494 ERVV-2B6SEH9 535 aa26.97■■□□□ 1.91
TSPAN3-207ENST00000559494 WDR43Q15061 677 aaKnown RBP eCLIP26.97■■□□□ 1.91
TSPAN3-207ENST00000559494 PROM2Q8N271 834 aa26.97■■□□□ 1.91
TSPAN3-207ENST00000559494 PIGBQ92521 554 aa26.97■■□□□ 1.91
TSPAN3-207ENST00000559494 ADAMTS8Q9UP79 889 aa26.97■■□□□ 1.91
TSPAN3-207ENST00000559494 ITGB4P16144 1822 aa26.97■■□□□ 1.91
TSPAN3-207ENST00000559494 PNNQ9H307 717 aaKnown RBP26.95■■□□□ 1.91
TSPAN3-207ENST00000559494 RNMTO43148 476 aaKnown RBP26.94■■□□□ 1.9
TSPAN3-207ENST00000559494 GNAT3A8MTJ3 354 aa26.93■■□□□ 1.9
TSPAN3-207ENST00000559494 TMOD3Q9NYL9 352 aa26.93■■□□□ 1.9
TSPAN3-207ENST00000559494 TXNRD1Q16881 649 aa26.92■■□□□ 1.9
TSPAN3-207ENST00000559494 MRS2Q9HD23 443 aa26.92■■□□□ 1.9
TSPAN3-207ENST00000559494 CABP4P57796 275 aa26.91■■□□□ 1.9
TSPAN3-207ENST00000559494 IL17REQ8NFR9 667 aa26.91■■□□□ 1.9
TSPAN3-207ENST00000559494 MAP3K5Q99683 1374 aa26.91■■□□□ 1.9
TSPAN3-207ENST00000559494 NEFMP07197 916 aa26.9■■□□□ 1.9
TSPAN3-207ENST00000559494 NFATC2IPQ8NCF5 419 aa26.9■■□□□ 1.9
TSPAN3-207ENST00000559494 SCN11AQ9UI33 1791 aa26.9■■□□□ 1.9
TSPAN3-207ENST00000559494 CCDC146Q8IYE0 955 aa26.9■■□□□ 1.9
TSPAN3-207ENST00000559494 PNISRQ8TF01 805 aaKnown RBP26.9■■□□□ 1.9
TSPAN3-207ENST00000559494 ASAP1Q9ULH1 1129 aa26.89■■□□□ 1.89
TSPAN3-207ENST00000559494 RGPD3A6NKT7 1758 aaPredicted RBP26.88■■□□□ 1.89
TSPAN3-207ENST00000559494 RGPD4Q7Z3J3 1758 aa26.88■■□□□ 1.89
TSPAN3-207ENST00000559494 MAPK8IP3Q9UPT6 1336 aa26.88■■□□□ 1.89
TSPAN3-207ENST00000559494 NFE2L2Q16236 605 aa26.88■■□□□ 1.89
TSPAN3-207ENST00000559494 DIEXFQ68CQ4 756 aaKnown RBP26.88■■□□□ 1.89
TSPAN3-207ENST00000559494 SLC52A2Q9HAB3 445 aa26.88■■□□□ 1.89
TSPAN3-207ENST00000559494 ATG3Q9NT62 314 aa26.87■■□□□ 1.89
TSPAN3-207ENST00000559494 VIRMAQ69YN4 1812 aaKnown RBP26.86■■□□□ 1.89
TSPAN3-207ENST00000559494 ADAMTS7Q9UKP4 1686 aa26.86■■□□□ 1.89
TSPAN3-207ENST00000559494 SMARCC1Q92922 1105 aaPredicted RBP26.86■■□□□ 1.89
TSPAN3-207ENST00000559494 RUNDC1Q96C34 613 aa26.86■■□□□ 1.89
TSPAN3-207ENST00000559494 LRRC4BQ9NT99 713 aa26.86■■□□□ 1.89
TSPAN3-207ENST00000559494 RREB1Q92766 1687 aa26.85■■□□□ 1.89
TSPAN3-207ENST00000559494 HTATSF1O43719 755 aaKnown RBP26.84■■□□□ 1.89
TSPAN3-207ENST00000559494 KCNQ4P56696 695 aa26.84■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms