RNA–Protein interactions for RNA: ENST00000558562.1

TMED3-205, Transcript of transmembrane p24 trafficking protein 3, humanhuman

TSL 2

Gene TMED3, Length 938 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMED3-205ENST00000558562 USP31Q70CQ4 1352 aa18.55■□□□□ 0.56
TMED3-205ENST00000558562 TUBGCP6Q96RT7 1819 aa18.54■□□□□ 0.56
TMED3-205ENST00000558562 ST20-MTHFSA0A0A6YYL1 179 aa18.54■□□□□ 0.56
TMED3-205ENST00000558562 SLC27A3Q5K4L6 730 aa18.54■□□□□ 0.56
TMED3-205ENST00000558562 SYTL4Q96C24 671 aaPredicted RBP18.54■□□□□ 0.56
TMED3-205ENST00000558562 SHANK3Q9BYB0 1731 aa18.54■□□□□ 0.56
TMED3-205ENST00000558562 QSER1Q2KHR3 1735 aa18.53■□□□□ 0.56
TMED3-205ENST00000558562 LTV1Q96GA3 475 aaPredicted RBP18.53■□□□□ 0.56
TMED3-205ENST00000558562 SBNO2Q9Y2G9 1366 aa18.53■□□□□ 0.56
TMED3-205ENST00000558562 YBX3P16989 372 aaKnown RBP eCLIP18.52■□□□□ 0.56
TMED3-205ENST00000558562 PRIM1P49642 420 aaKnown RBP18.52■□□□□ 0.56
TMED3-205ENST00000558562 TMC1Q8TDI8 760 aa18.52■□□□□ 0.56
TMED3-205ENST00000558562 CD163L1Q9NR16 1453 aa18.52■□□□□ 0.55
TMED3-205ENST00000558562 COL24A1Q17RW2 1714 aa18.52■□□□□ 0.55
TMED3-205ENST00000558562 USP54Q70EL1 1684 aa18.51■□□□□ 0.55
TMED3-205ENST00000558562 MSH5O43196 834 aa18.5■□□□□ 0.55
TMED3-205ENST00000558562 SLC12A5Q9H2X9 1139 aa18.49■□□□□ 0.55
TMED3-205ENST00000558562 ANKRD36BQ8N2N9 1353 aa18.47■□□□□ 0.55
TMED3-205ENST00000558562 DOT1LQ8TEK3 1739 aa18.47■□□□□ 0.55
TMED3-205ENST00000558562 ANP32CO43423 234 aa18.47■□□□□ 0.55
TMED3-205ENST00000558562 MSL1Q68DK7 614 aa18.47■□□□□ 0.55
TMED3-205ENST00000558562 HDGFL2Q7Z4V5 671 aaPredicted RBP18.47■□□□□ 0.55
TMED3-205ENST00000558562 IP6K1Q92551 441 aa18.47■□□□□ 0.55
TMED3-205ENST00000558562 NSD2O96028 1365 aa18.46■□□□□ 0.55
TMED3-205ENST00000558562 GRIN3BO60391 1043 aa18.46■□□□□ 0.55
TMED3-205ENST00000558562 COL23A1Q86Y22 540 aaPredicted RBP18.46■□□□□ 0.55
TMED3-205ENST00000558562 POLR3GLQ9BT43 218 aa18.46■□□□□ 0.55
TMED3-205ENST00000558562 CCNL1Q9UK58 526 aaPredicted RBP18.46■□□□□ 0.55
TMED3-205ENST00000558562 LY75O60449 1722 aa18.45■□□□□ 0.54
TMED3-205ENST00000558562 EDC4Q6P2E9 1401 aaKnown RBP18.44■□□□□ 0.54
TMED3-205ENST00000558562 ATP10DQ9P241 1426 aa18.44■□□□□ 0.54
TMED3-205ENST00000558562 FBLN1P23142 703 aa18.43■□□□□ 0.54
TMED3-205ENST00000558562 TESK2Q96S53 571 aa18.43■□□□□ 0.54
TMED3-205ENST00000558562 A0A1W2PP64 1363 aa18.42■□□□□ 0.54
TMED3-205ENST00000558562 ZCRB1Q8TBF4 217 aaKnown RBP18.42■□□□□ 0.54
TMED3-205ENST00000558562 FAM208AQ9UK61 1670 aaKnown RBP18.41■□□□□ 0.54
TMED3-205ENST00000558562 RGPD2P0DJD1 1756 aa18.41■□□□□ 0.54
TMED3-205ENST00000558562 TMF1P82094 1093 aa18.41■□□□□ 0.54
TMED3-205ENST00000558562 ZNF526Q8TF50 670 aaPredicted RBP18.41■□□□□ 0.54
TMED3-205ENST00000558562 TERF2IPQ9NYB0 399 aa18.41■□□□□ 0.54
TMED3-205ENST00000558562 MEGF6O75095 1541 aa18.4■□□□□ 0.54
TMED3-205ENST00000558562 HOXC9P31274 260 aa18.4■□□□□ 0.54
TMED3-205ENST00000558562 MAP3K19Q56UN5 1328 aa18.4■□□□□ 0.54
TMED3-205ENST00000558562 GPBP1L1Q9HC44 474 aaPredicted RBP18.39■□□□□ 0.53
TMED3-205ENST00000558562 AMPHP49418 695 aa18.38■□□□□ 0.53
TMED3-205ENST00000558562 WWC3Q9ULE0 1092 aa18.38■□□□□ 0.53
TMED3-205ENST00000558562 USHBP1Q8N6Y0 703 aa18.37■□□□□ 0.53
TMED3-205ENST00000558562 COG3Q96JB2 828 aa18.36■□□□□ 0.53
TMED3-205ENST00000558562 CD2APQ9Y5K6 639 aa18.36■□□□□ 0.53
TMED3-205ENST00000558562 CCER2I3L3R5 266 aa18.35■□□□□ 0.53
TMED3-205ENST00000558562 NBPF6Q5VWK0 638 aa18.35■□□□□ 0.53
TMED3-205ENST00000558562 NBPF4Q96M43 638 aa18.35■□□□□ 0.53
TMED3-205ENST00000558562 C5P01031 1676 aa18.34■□□□□ 0.53
TMED3-205ENST00000558562 HSPA6P17066 643 aa18.34■□□□□ 0.53
TMED3-205ENST00000558562 ADCY9O60503 1353 aa18.33■□□□□ 0.53
TMED3-205ENST00000558562 SLC24A1O60721 1099 aa18.33■□□□□ 0.52
TMED3-205ENST00000558562 CDCA8Q53HL2 280 aa18.33■□□□□ 0.52
TMED3-205ENST00000558562 SMIM5Q71RC9 77 aa18.33■□□□□ 0.52
TMED3-205ENST00000558562 RRS1Q15050 365 aaKnown RBP18.32■□□□□ 0.52
TMED3-205ENST00000558562 YTHDC1Q96MU7 727 aaKnown RBP18.32■□□□□ 0.52
TMED3-205ENST00000558562 MPRIPQ6WCQ1 1025 aa18.31■□□□□ 0.52
TMED3-205ENST00000558562 AMIGO3Q86WK7 504 aa18.31■□□□□ 0.52
TMED3-205ENST00000558562 RAPGEF4Q8WZA2 1011 aa18.31■□□□□ 0.52
TMED3-205ENST00000558562 PALLDQ8WX93 1383 aa18.3■□□□□ 0.52
TMED3-205ENST00000558562 TAF1LQ8IZX4 1826 aa18.3■□□□□ 0.52
TMED3-205ENST00000558562 IGSF1Q8N6C5 1336 aa18.29■□□□□ 0.52
TMED3-205ENST00000558562 PHF14O94880 888 aa18.29■□□□□ 0.52
TMED3-205ENST00000558562 FLAD1Q8NFF5 587 aa18.29■□□□□ 0.52
TMED3-205ENST00000558562 TATP17735 454 aaPredicted RBP18.28■□□□□ 0.52
TMED3-205ENST00000558562 AK7Q96M32 723 aa18.28■□□□□ 0.52
TMED3-205ENST00000558562 PUS7Q96PZ0 661 aaKnown RBP18.28■□□□□ 0.52
TMED3-205ENST00000558562 PRKRIP1Q9H875 184 aaPredicted RBP18.28■□□□□ 0.52
TMED3-205ENST00000558562 CGNL1Q0VF96 1302 aa18.27■□□□□ 0.52
TMED3-205ENST00000558562 RTL1A6NKG5 1358 aa18.27■□□□□ 0.51
TMED3-205ENST00000558562 C4BP0C0L5 1744 aa18.26■□□□□ 0.51
TMED3-205ENST00000558562 CENPBP07199 599 aaPredicted RBP18.26■□□□□ 0.51
TMED3-205ENST00000558562 GGNBP2Q9H3C7 697 aa18.26■□□□□ 0.51
TMED3-205ENST00000558562 TOGARAM1Q9Y4F4 1720 aa18.26■□□□□ 0.51
TMED3-205ENST00000558562 PCDH11XQ9BZA7 1347 aa18.25■□□□□ 0.51
TMED3-205ENST00000558562 PCDH11YQ9BZA8 1340 aa18.25■□□□□ 0.51
TMED3-205ENST00000558562 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.25■□□□□ 0.51
TMED3-205ENST00000558562 CYP27B1O15528 508 aa18.25■□□□□ 0.51
TMED3-205ENST00000558562 HSP90AB2PQ58FF8 381 aa18.25■□□□□ 0.51
TMED3-205ENST00000558562 SMG6Q86US8 1419 aaKnown RBP18.24■□□□□ 0.51
TMED3-205ENST00000558562 KIF3CO14782 793 aa18.24■□□□□ 0.51
TMED3-205ENST00000558562 UBR3Q6ZT12 1888 aa18.23■□□□□ 0.51
TMED3-205ENST00000558562 FYB1O15117 783 aa18.23■□□□□ 0.51
TMED3-205ENST00000558562 ITGB4P16144 1822 aa18.23■□□□□ 0.51
TMED3-205ENST00000558562 PIGBQ92521 554 aa18.22■□□□□ 0.51
TMED3-205ENST00000558562 SMARCC1Q92922 1105 aaPredicted RBP18.22■□□□□ 0.51
TMED3-205ENST00000558562 HMGB2P26583 209 aaKnown RBP18.21■□□□□ 0.51
TMED3-205ENST00000558562 LINC00116Q8NCU8 138 aa18.2■□□□□ 0.5
TMED3-205ENST00000558562 PANK3Q9H999 370 aa18.2■□□□□ 0.5
TMED3-205ENST00000558562 INSRP06213 1382 aa18.19■□□□□ 0.5
TMED3-205ENST00000558562 SSFA2P28290 1259 aa18.18■□□□□ 0.5
TMED3-205ENST00000558562 LOC102724428A0A0B4J2F2 783 aa18.17■□□□□ 0.5
TMED3-205ENST00000558562 GNPATO15228 680 aa18.17■□□□□ 0.5
TMED3-205ENST00000558562 SIK1P57059 783 aa18.17■□□□□ 0.5
TMED3-205ENST00000558562 CNGB1Q14028 1251 aaPredicted RBP18.17■□□□□ 0.5
TMED3-205ENST00000558562 FLT4P35916 1363 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms