RNA–Protein interactions for RNA: ENST00000558561.1

SPG11-211, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-211ENST00000558561 SIAH2O43255 324 aa6.86□□□□□ -1.31
SPG11-211ENST00000558561 TRIM67Q6ZTA4 783 aa6.86□□□□□ -1.31
SPG11-211ENST00000558561 C1QTNF2Q9BXJ5 285 aa6.86□□□□□ -1.31
SPG11-211ENST00000558561 PCDHB9Q9Y5E1 797 aa6.86□□□□□ -1.31
SPG11-211ENST00000558561 NUP153P49790 1475 aaKnown RBP6.85□□□□□ -1.31
SPG11-211ENST00000558561 GDF9O60383 454 aa6.85□□□□□ -1.31
SPG11-211ENST00000558561 FAM174AQ8TBP5 190 aa6.85□□□□□ -1.31
SPG11-211ENST00000558561 RAPGEF6Q8TEU7 1601 aa6.84□□□□□ -1.31
SPG11-211ENST00000558561 EIF4G2P78344 907 aaKnown RBP eCLIP6.84□□□□□ -1.31
SPG11-211ENST00000558561 ARID5BQ14865 1188 aa6.84□□□□□ -1.31
SPG11-211ENST00000558561 HDGFL1Q5TGJ6 251 aa6.84□□□□□ -1.31
SPG11-211ENST00000558561 DZIP3Q86Y13 1208 aaKnown RBP6.84□□□□□ -1.31
SPG11-211ENST00000558561 ADAMTS19Q8TE59 1207 aa6.84□□□□□ -1.31
SPG11-211ENST00000558561 ALG2Q9H553 416 aa6.84□□□□□ -1.31
SPG11-211ENST00000558561 LRRIQ1Q96JM4 1722 aa6.84□□□□□ -1.31
SPG11-211ENST00000558561 CDK13Q14004 1512 aaKnown RBP6.83□□□□□ -1.32
SPG11-211ENST00000558561 PLEKHD1A6NEE1 506 aa6.83□□□□□ -1.32
SPG11-211ENST00000558561 TRMT44Q8IYL2 757 aaKnown RBP6.83□□□□□ -1.32
SPG11-211ENST00000558561 TLL2Q9Y6L7 1015 aa6.83□□□□□ -1.32
SPG11-211ENST00000558561 GLI2P10070 1586 aa6.82□□□□□ -1.32
SPG11-211ENST00000558561 WDR7Q9Y4E6 1490 aa6.82□□□□□ -1.32
SPG11-211ENST00000558561 RAPGEF3O95398 923 aa6.82□□□□□ -1.32
SPG11-211ENST00000558561 SEMA3FQ13275 785 aa6.82□□□□□ -1.32
SPG11-211ENST00000558561 SLC10A4Q96EP9 437 aa6.82□□□□□ -1.32
SPG11-211ENST00000558561 CD109Q6YHK3 1445 aa6.82□□□□□ -1.32
SPG11-211ENST00000558561 ALDH1A1P00352 501 aa6.81□□□□□ -1.32
SPG11-211ENST00000558561 GRM5P41594 1212 aa6.81□□□□□ -1.32
SPG11-211ENST00000558561 VASH1Q7L8A9 365 aaPredicted RBP6.81□□□□□ -1.32
SPG11-211ENST00000558561 CYP4X1Q8N118 509 aa6.81□□□□□ -1.32
SPG11-211ENST00000558561 SNIP1Q8TAD8 396 aaKnown RBP6.81□□□□□ -1.32
SPG11-211ENST00000558561 GLMNQ92990 594 aa6.81□□□□□ -1.32
SPG11-211ENST00000558561 CDK15Q96Q40 435 aa6.81□□□□□ -1.32
SPG11-211ENST00000558561 CEP126Q9P2H0 1117 aa6.81□□□□□ -1.32
SPG11-211ENST00000558561 PDZRN3Q9UPQ7 1066 aa6.81□□□□□ -1.32
SPG11-211ENST00000558561 MAP3K4Q9Y6R4 1608 aa6.8□□□□□ -1.32
SPG11-211ENST00000558561 TTC24A2A3L6 582 aaPredicted RBP6.8□□□□□ -1.32
SPG11-211ENST00000558561 J3QL48 77 aa6.8□□□□□ -1.32
SPG11-211ENST00000558561 GIGYF1O75420 1035 aaPredicted RBP6.8□□□□□ -1.32
SPG11-211ENST00000558561 CLIP1P30622 1438 aa6.8□□□□□ -1.32
SPG11-211ENST00000558561 SOX11P35716 441 aa6.8□□□□□ -1.32
SPG11-211ENST00000558561 PRR20EP86478 221 aa6.8□□□□□ -1.32
SPG11-211ENST00000558561 PRR20CP86479 221 aa6.8□□□□□ -1.32
SPG11-211ENST00000558561 PRR20DP86480 221 aa6.8□□□□□ -1.32
SPG11-211ENST00000558561 PRR20BP86481 221 aa6.8□□□□□ -1.32
SPG11-211ENST00000558561 PRR20AP86496 221 aa6.8□□□□□ -1.32
SPG11-211ENST00000558561 KCTD15Q96SI1 283 aaPredicted RBP6.8□□□□□ -1.32
SPG11-211ENST00000558561 C1orf115Q9H7X2 142 aa6.8□□□□□ -1.32
SPG11-211ENST00000558561 TOR4AQ9NXH8 423 aa6.8□□□□□ -1.32
SPG11-211ENST00000558561 RAB15P59190 212 aa6.79□□□□□ -1.32
SPG11-211ENST00000558561 MCCD1P59942 119 aaPredicted RBP6.79□□□□□ -1.32
SPG11-211ENST00000558561 MPNDQ8N594 471 aa6.79□□□□□ -1.32
SPG11-211ENST00000558561 CALR3Q96L12 384 aaKnown RBP6.79□□□□□ -1.32
SPG11-211ENST00000558561 KDM6BO15054 1643 aa6.79□□□□□ -1.32
SPG11-211ENST00000558561 EFCAB5A4FU69 1503 aa6.78□□□□□ -1.32
SPG11-211ENST00000558561 MAGI3Q5TCQ9 1506 aa6.78□□□□□ -1.32
SPG11-211ENST00000558561 SMPD1P17405 629 aa6.78□□□□□ -1.32
SPG11-211ENST00000558561 TSGA10IPQ3SY00 556 aa6.78□□□□□ -1.32
SPG11-211ENST00000558561 MAP4K5Q9Y4K4 846 aa6.78□□□□□ -1.32
SPG11-211ENST00000558561 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP6.77□□□□□ -1.33
SPG11-211ENST00000558561 ESPNB1AK53 854 aa6.77□□□□□ -1.33
SPG11-211ENST00000558561 PIK3CDO00329 1044 aa6.77□□□□□ -1.33
SPG11-211ENST00000558561 GFRA3O60609 400 aa6.77□□□□□ -1.33
SPG11-211ENST00000558561 ADH1CP00326 375 aa6.77□□□□□ -1.33
SPG11-211ENST00000558561 NR3C2P08235 984 aa6.77□□□□□ -1.33
SPG11-211ENST00000558561 FSHRP23945 695 aa6.77□□□□□ -1.33
SPG11-211ENST00000558561 NBPF20Q3BBV1 942 aa6.77□□□□□ -1.33
SPG11-211ENST00000558561 PHTF2Q8N3S3 785 aa6.77□□□□□ -1.33
SPG11-211ENST00000558561 CDV3Q9UKY7 258 aaKnown RBP6.77□□□□□ -1.33
SPG11-211ENST00000558561 INTS6LQ5JSJ4 861 aaKnown RBP6.76□□□□□ -1.33
SPG11-211ENST00000558561 ZNF592Q92610 1267 aa6.76□□□□□ -1.33
SPG11-211ENST00000558561 UCN2Q96RP3 112 aa6.76□□□□□ -1.33
SPG11-211ENST00000558561 WASF2Q9Y6W5 498 aa6.76□□□□□ -1.33
SPG11-211ENST00000558561 KIF14Q15058 1648 aa6.76□□□□□ -1.33
SPG11-211ENST00000558561 ABCA9Q8IUA7 1624 aa6.76□□□□□ -1.33
SPG11-211ENST00000558561 CEP162Q5TB80 1403 aa6.76□□□□□ -1.33
SPG11-211ENST00000558561 FMN1Q68DA7 1419 aa6.76□□□□□ -1.33
SPG11-211ENST00000558561 CFAP43Q8NDM7 1665 aa6.75□□□□□ -1.33
SPG11-211ENST00000558561 PCF11O94913 1555 aaKnown RBP6.75□□□□□ -1.33
SPG11-211ENST00000558561 NR5A1Q13285 461 aa6.75□□□□□ -1.33
SPG11-211ENST00000558561 NNTQ13423 1086 aa6.75□□□□□ -1.33
SPG11-211ENST00000558561 SLFNL1Q499Z3 407 aa6.75□□□□□ -1.33
SPG11-211ENST00000558561 KANK4Q5T7N3 995 aaPredicted RBP6.75□□□□□ -1.33
SPG11-211ENST00000558561 TBC1D9Q6ZT07 1266 aa6.75□□□□□ -1.33
SPG11-211ENST00000558561 AFAP1Q8N556 730 aa6.75□□□□□ -1.33
SPG11-211ENST00000558561 CCDC85AQ96PX6 553 aaPredicted RBP6.75□□□□□ -1.33
SPG11-211ENST00000558561 CASKIN1Q8WXD9 1431 aa6.75□□□□□ -1.33
SPG11-211ENST00000558561 TTC37Q6PGP7 1564 aa6.74□□□□□ -1.33
SPG11-211ENST00000558561 ERVH48-1M5A8F1 160 aa6.74□□□□□ -1.33
SPG11-211ENST00000558561 RNF135Q8IUD6 432 aa6.74□□□□□ -1.33
SPG11-211ENST00000558561 HPS1Q92902 700 aa6.74□□□□□ -1.33
SPG11-211ENST00000558561 TMPRSS4Q9NRS4 437 aa6.74□□□□□ -1.33
SPG11-211ENST00000558561 ZNF644Q9H582 1327 aaPredicted RBP6.74□□□□□ -1.33
SPG11-211ENST00000558561 FAM187AA6NFU0 413 aa6.73□□□□□ -1.33
SPG11-211ENST00000558561 HNRNPMP52272 730 aaKnown RBP eCLIP6.73□□□□□ -1.33
SPG11-211ENST00000558561 PPP1R26Q5T8A7 1209 aaPredicted RBP6.73□□□□□ -1.33
SPG11-211ENST00000558561 RNF20Q5VTR2 975 aa6.73□□□□□ -1.33
SPG11-211ENST00000558561 PPARGC1BQ86YN6 1023 aaKnown RBP6.73□□□□□ -1.33
SPG11-211ENST00000558561 CCDC116Q8IYX3 515 aa6.73□□□□□ -1.33
SPG11-211ENST00000558561 CDCA7Q9BWT1 371 aaPredicted RBP6.73□□□□□ -1.33
SPG11-211ENST00000558561 TFIP11Q9UBB9 837 aaKnown RBP6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms