RNA–Protein interactions for RNA: ENST00000558474.1

VPS18-202, Transcript of VPS18, CORVET/HOPS core subunit, humanhuman

TSL 3 BASIC

Gene VPS18, Length 873 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS18-202ENST00000558474 NGLY1Q96IV0 654 aa19.53■□□□□ 0.72
VPS18-202ENST00000558474 THRAP3Q9Y2W1 955 aaKnown RBP19.53■□□□□ 0.72
VPS18-202ENST00000558474 C8orf37Q96NL8 207 aa19.52■□□□□ 0.72
VPS18-202ENST00000558474 WNK3Q9BYP7 1800 aa19.52■□□□□ 0.72
VPS18-202ENST00000558474 OVOS2A0A0G2JMS6 1433 aa19.51■□□□□ 0.71
VPS18-202ENST00000558474 CALD1Q05682 793 aaKnown RBP19.51■□□□□ 0.71
VPS18-202ENST00000558474 MTHFSDQ2M296 383 aaKnown RBP19.51■□□□□ 0.71
VPS18-202ENST00000558474 MEX3CQ5U5Q3 659 aaKnown RBP19.51■□□□□ 0.71
VPS18-202ENST00000558474 CDCA7Q9BWT1 371 aaPredicted RBP19.51■□□□□ 0.71
VPS18-202ENST00000558474 TRIM35Q9UPQ4 493 aa19.51■□□□□ 0.71
VPS18-202ENST00000558474 BCL9LQ86UU0 1499 aa19.51■□□□□ 0.71
VPS18-202ENST00000558474 IL2RBP14784 551 aa19.5■□□□□ 0.71
VPS18-202ENST00000558474 GOLGA2Q08379 1002 aa19.5■□□□□ 0.71
VPS18-202ENST00000558474 NEUROD2Q15784 382 aa19.5■□□□□ 0.71
VPS18-202ENST00000558474 SPG7Q9UQ90 795 aa19.5■□□□□ 0.71
VPS18-202ENST00000558474 RRP7AQ9Y3A4 280 aaKnown RBP19.5■□□□□ 0.71
VPS18-202ENST00000558474 MEGF6O75095 1541 aa19.5■□□□□ 0.71
VPS18-202ENST00000558474 IL16Q14005 1332 aa19.5■□□□□ 0.71
VPS18-202ENST00000558474 SALL2Q9Y467 1007 aaPredicted RBP19.49■□□□□ 0.71
VPS18-202ENST00000558474 VPS72Q15906 364 aa19.48■□□□□ 0.71
VPS18-202ENST00000558474 AKAP4Q5JQC9 854 aa19.48■□□□□ 0.71
VPS18-202ENST00000558474 SPATA31A1Q5TZJ5 1347 aa19.48■□□□□ 0.71
VPS18-202ENST00000558474 SPATA31A5Q5VU36 1347 aa19.48■□□□□ 0.71
VPS18-202ENST00000558474 SPATA31A7Q8IWB4 1347 aa19.48■□□□□ 0.71
VPS18-202ENST00000558474 MAP3K5Q99683 1374 aa19.47■□□□□ 0.71
VPS18-202ENST00000558474 GNAT3A8MTJ3 354 aa19.47■□□□□ 0.71
VPS18-202ENST00000558474 DISP2A7MBM2 1401 aa19.47■□□□□ 0.71
VPS18-202ENST00000558474 E9PSI1 815 aa19.46■□□□□ 0.71
VPS18-202ENST00000558474 BARGINQ6ZT62 677 aa19.46■□□□□ 0.71
VPS18-202ENST00000558474 RTF1Q92541 710 aaKnown RBP19.46■□□□□ 0.71
VPS18-202ENST00000558474 USP21Q9UK80 565 aa19.46■□□□□ 0.71
VPS18-202ENST00000558474 C1orf141Q5JVX7 400 aa19.45■□□□□ 0.7
VPS18-202ENST00000558474 ADAMTS7Q9UKP4 1686 aa19.45■□□□□ 0.7
VPS18-202ENST00000558474 LRRC37A3O60309 1634 aa19.44■□□□□ 0.7
VPS18-202ENST00000558474 SLFN5Q08AF3 891 aa19.44■□□□□ 0.7
VPS18-202ENST00000558474 ZNF530Q6P9A1 599 aaPredicted RBP19.44■□□□□ 0.7
VPS18-202ENST00000558474 TRMT2AQ8IZ69 625 aaKnown RBP19.44■□□□□ 0.7
VPS18-202ENST00000558474 SENP3-EIF4A1A0A087X0R7 540 aa19.43■□□□□ 0.7
VPS18-202ENST00000558474 HSP90AB1P08238 724 aaKnown RBP19.43■□□□□ 0.7
VPS18-202ENST00000558474 IFNL2Q8IZJ0 200 aa19.43■□□□□ 0.7
VPS18-202ENST00000558474 ZCRB1Q8TBF4 217 aaKnown RBP19.43■□□□□ 0.7
VPS18-202ENST00000558474 VIRMAQ69YN4 1812 aaKnown RBP19.43■□□□□ 0.7
VPS18-202ENST00000558474 AFF2P51816 1311 aa19.43■□□□□ 0.7
VPS18-202ENST00000558474 PCDH11XQ9BZA7 1347 aa19.43■□□□□ 0.7
VPS18-202ENST00000558474 PCDH11YQ9BZA8 1340 aa19.43■□□□□ 0.7
VPS18-202ENST00000558474 SHANK3Q9BYB0 1731 aa19.42■□□□□ 0.7
VPS18-202ENST00000558474 MYH16Q9H6N6 1097 aa19.42■□□□□ 0.7
VPS18-202ENST00000558474 BABAM1Q9NWV8 329 aa19.41■□□□□ 0.7
VPS18-202ENST00000558474 USP35Q9P2H5 1018 aa19.41■□□□□ 0.7
VPS18-202ENST00000558474 TRPC5Q9UL62 973 aaPredicted RBP19.41■□□□□ 0.7
VPS18-202ENST00000558474 CEMIPQ8WUJ3 1361 aa19.41■□□□□ 0.7
VPS18-202ENST00000558474 ATRNO75882 1429 aa19.41■□□□□ 0.7
VPS18-202ENST00000558474 SCN11AQ9UI33 1791 aa19.4■□□□□ 0.7
VPS18-202ENST00000558474 PHKG2P15735 406 aa19.4■□□□□ 0.7
VPS18-202ENST00000558474 GNAI1P63096 354 aa19.4■□□□□ 0.7
VPS18-202ENST00000558474 IFT57Q9NWB7 429 aa19.4■□□□□ 0.7
VPS18-202ENST00000558474 CCDC9Q9Y3X0 531 aaKnown RBP19.39■□□□□ 0.69
VPS18-202ENST00000558474 TNS2Q63HR2 1409 aa19.39■□□□□ 0.69
VPS18-202ENST00000558474 ZNF853P0CG23 659 aa19.38■□□□□ 0.69
VPS18-202ENST00000558474 NKX1-1Q15270 411 aaPredicted RBP19.38■□□□□ 0.69
VPS18-202ENST00000558474 DUSP27Q5VZP5 1158 aa19.38■□□□□ 0.69
VPS18-202ENST00000558474 CDCA7LQ96GN5 454 aa19.38■□□□□ 0.69
VPS18-202ENST00000558474 DCAF5Q96JK2 942 aa19.38■□□□□ 0.69
VPS18-202ENST00000558474 CFAP44Q96MT7 982 aa19.38■□□□□ 0.69
VPS18-202ENST00000558474 EXOC5O00471 708 aa19.37■□□□□ 0.69
VPS18-202ENST00000558474 CYP27B1O15528 508 aa19.37■□□□□ 0.69
VPS18-202ENST00000558474 ZNF772Q68DY9 489 aaPredicted RBP19.37■□□□□ 0.69
VPS18-202ENST00000558474 MCM10Q7L590 875 aa19.37■□□□□ 0.69
VPS18-202ENST00000558474 IL17REQ8NFR9 667 aa19.37■□□□□ 0.69
VPS18-202ENST00000558474 GJD4Q96KN9 370 aaPredicted RBP19.36■□□□□ 0.69
VPS18-202ENST00000558474 SIPA1L3O60292 1781 aaPredicted RBP19.36■□□□□ 0.69
VPS18-202ENST00000558474 THSD7AQ9UPZ6 1657 aa19.36■□□□□ 0.69
VPS18-202ENST00000558474 GLI3P10071 1580 aa19.36■□□□□ 0.69
VPS18-202ENST00000558474 RNMTO43148 476 aaKnown RBP19.35■□□□□ 0.69
VPS18-202ENST00000558474 DCTN1Q14203 1278 aa19.35■□□□□ 0.69
VPS18-202ENST00000558474 SPINK5Q9NQ38 1064 aaPredicted RBP19.35■□□□□ 0.69
VPS18-202ENST00000558474 MRC1P22897 1456 aa19.35■□□□□ 0.69
VPS18-202ENST00000558474 ONECUT3O60422 494 aaPredicted RBP19.34■□□□□ 0.69
VPS18-202ENST00000558474 DDB1Q16531 1140 aa19.34■□□□□ 0.69
VPS18-202ENST00000558474 CHL1O00533 1208 aa19.33■□□□□ 0.68
VPS18-202ENST00000558474 CT47B1P0C2W7 299 aaPredicted RBP19.33■□□□□ 0.68
VPS18-202ENST00000558474 TAF7Q15545 349 aaPredicted RBP19.33■□□□□ 0.68
VPS18-202ENST00000558474 THUMPD2Q9BTF0 503 aaKnown RBP19.33■□□□□ 0.68
VPS18-202ENST00000558474 KDM6AO15550 1401 aaPredicted RBP19.33■□□□□ 0.68
VPS18-202ENST00000558474 FANCIQ9NVI1 1328 aa19.32■□□□□ 0.68
VPS18-202ENST00000558474 TEFQ10587 303 aa19.32■□□□□ 0.68
VPS18-202ENST00000558474 MPRIPQ6WCQ1 1025 aa19.32■□□□□ 0.68
VPS18-202ENST00000558474 QTRT2Q9H974 415 aaKnown RBP19.32■□□□□ 0.68
VPS18-202ENST00000558474 LGR6Q9HBX8 967 aa19.32■□□□□ 0.68
VPS18-202ENST00000558474 ERVV-2B6SEH9 535 aa19.31■□□□□ 0.68
VPS18-202ENST00000558474 KDM3BQ7LBC6 1761 aa19.3■□□□□ 0.68
VPS18-202ENST00000558474 FAM98CQ17RN3 349 aaKnown RBP19.3■□□□□ 0.68
VPS18-202ENST00000558474 DDX54Q8TDD1 881 aaKnown RBP19.29■□□□□ 0.68
VPS18-202ENST00000558474 SLC52A2Q9HAB3 445 aa19.29■□□□□ 0.68
VPS18-202ENST00000558474 MBIPQ9NS73 344 aa19.29■□□□□ 0.68
VPS18-202ENST00000558474 ZNF428Q96B54 188 aa19.28■□□□□ 0.68
VPS18-202ENST00000558474 LAS1LQ9Y4W2 734 aaKnown RBP19.28■□□□□ 0.68
VPS18-202ENST00000558474 SOS1Q07889 1333 aaPredicted RBP19.27■□□□□ 0.68
VPS18-202ENST00000558474 TSPYL4Q9UJ04 414 aa19.27■□□□□ 0.68
VPS18-202ENST00000558474 TOGARAM1Q9Y4F4 1720 aa19.26■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms