RNA–Protein interactions for RNA: ENST00000558264.5

TPM1-210, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 2,687 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-210ENST00000558264 NECTIN2Q92692 538 aa13.35□□□□□ -0.27
TPM1-210ENST00000558264 ABCC4O15439 1325 aa13.34□□□□□ -0.27
TPM1-210ENST00000558264 DAXXQ9UER7 740 aaPredicted RBP13.34□□□□□ -0.27
TPM1-210ENST00000558264 CHD2O14647 1828 aaKnown RBP13.34□□□□□ -0.27
TPM1-210ENST00000558264 SMC5Q8IY18 1101 aa13.34□□□□□ -0.27
TPM1-210ENST00000558264 CRB1P82279 1406 aa13.34□□□□□ -0.27
TPM1-210ENST00000558264 ARHGAP45Q92619 1136 aa13.33□□□□□ -0.28
TPM1-210ENST00000558264 NPHP4O75161 1426 aaPredicted RBP13.33□□□□□ -0.28
TPM1-210ENST00000558264 ADAMTSL3P82987 1691 aa13.32□□□□□ -0.28
TPM1-210ENST00000558264 SIRT2Q8IXJ6 389 aa13.32□□□□□ -0.28
TPM1-210ENST00000558264 KDRP35968 1356 aa13.32□□□□□ -0.28
TPM1-210ENST00000558264 SETD1BQ9UPS6 1966 aaKnown RBP13.32□□□□□ -0.28
TPM1-210ENST00000558264 MARF1Q9Y4F3 1742 aaKnown RBP13.32□□□□□ -0.28
TPM1-210ENST00000558264 SLC4A2P04920 1241 aa13.32□□□□□ -0.28
TPM1-210ENST00000558264 ANKRD45Q5TZF3 282 aa13.32□□□□□ -0.28
TPM1-210ENST00000558264 API5Q9BZZ5 524 aaKnown RBP13.32□□□□□ -0.28
TPM1-210ENST00000558264 G2E3Q7L622 706 aa13.31□□□□□ -0.28
TPM1-210ENST00000558264 LRRC59Q96AG4 307 aaKnown RBP13.31□□□□□ -0.28
TPM1-210ENST00000558264 ADGRL3Q9HAR2 1447 aa13.31□□□□□ -0.28
TPM1-210ENST00000558264 ZNF142P52746 1687 aaPredicted RBP13.3□□□□□ -0.28
TPM1-210ENST00000558264 F6X3S4 739 aa13.3□□□□□ -0.28
TPM1-210ENST00000558264 GAS2L2Q8NHY3 880 aa13.3□□□□□ -0.28
TPM1-210ENST00000558264 MFAP1P55081 439 aaKnown RBP13.3□□□□□ -0.28
TPM1-210ENST00000558264 NUCB1Q02818 461 aa13.3□□□□□ -0.28
TPM1-210ENST00000558264 SLC4A10Q6U841 1118 aa13.3□□□□□ -0.28
TPM1-210ENST00000558264 VIRMAQ69YN4 1812 aaKnown RBP13.3□□□□□ -0.28
TPM1-210ENST00000558264 CHD1LQ86WJ1 897 aa13.29□□□□□ -0.28
TPM1-210ENST00000558264 PROSER2Q86WR7 435 aaPredicted RBP13.29□□□□□ -0.28
TPM1-210ENST00000558264 GNAT3A8MTJ3 354 aa13.29□□□□□ -0.28
TPM1-210ENST00000558264 NBPF6Q5VWK0 638 aa13.29□□□□□ -0.28
TPM1-210ENST00000558264 IL17REQ8NFR9 667 aa13.29□□□□□ -0.28
TPM1-210ENST00000558264 NBPF4Q96M43 638 aa13.29□□□□□ -0.28
TPM1-210ENST00000558264 APBB1O00213 710 aa13.28□□□□□ -0.28
TPM1-210ENST00000558264 DDX17Q92841 729 aaKnown RBP13.28□□□□□ -0.28
TPM1-210ENST00000558264 MSH6P52701 1360 aa13.28□□□□□ -0.28
TPM1-210ENST00000558264 NWD1Q149M9 1564 aa13.28□□□□□ -0.28
TPM1-210ENST00000558264 RGS12O14924 1447 aa13.28□□□□□ -0.28
TPM1-210ENST00000558264 RTL5Q5HYW3 569 aaPredicted RBP13.28□□□□□ -0.28
TPM1-210ENST00000558264 KIAA0232Q92628 1395 aa13.27□□□□□ -0.28
TPM1-210ENST00000558264 MEIS3Q99687 375 aa13.27□□□□□ -0.29
TPM1-210ENST00000558264 UPF2Q9HAU5 1272 aaKnown RBP13.27□□□□□ -0.29
TPM1-210ENST00000558264 IP6K1Q92551 441 aa13.26□□□□□ -0.29
TPM1-210ENST00000558264 LTN1O94822 1766 aa13.26□□□□□ -0.29
TPM1-210ENST00000558264 MAP3K5Q99683 1374 aa13.25□□□□□ -0.29
TPM1-210ENST00000558264 GCP02774 474 aa13.25□□□□□ -0.29
TPM1-210ENST00000558264 INTS3Q68E01 1043 aaKnown RBP13.25□□□□□ -0.29
TPM1-210ENST00000558264 TBC1D32Q96NH3 1257 aa13.25□□□□□ -0.29
TPM1-210ENST00000558264 LGR6Q9HBX8 967 aa13.25□□□□□ -0.29
TPM1-210ENST00000558264 CHMP4BQ9H444 224 aaKnown RBP13.24□□□□□ -0.29
TPM1-210ENST00000558264 NFAT5O94916 1531 aa13.24□□□□□ -0.29
TPM1-210ENST00000558264 HAP1P54257 671 aaPredicted RBP13.24□□□□□ -0.29
TPM1-210ENST00000558264 HSPA2P54652 639 aa13.24□□□□□ -0.29
TPM1-210ENST00000558264 GCC1Q96CN9 775 aa13.24□□□□□ -0.29
TPM1-210ENST00000558264 ZC3H6P61129 1189 aaKnown RBP13.23□□□□□ -0.29
TPM1-210ENST00000558264 KRT28Q7Z3Y7 464 aa13.23□□□□□ -0.29
TPM1-210ENST00000558264 C16orf71Q8IYS4 520 aaPredicted RBP13.23□□□□□ -0.29
TPM1-210ENST00000558264 SPRYD3Q8NCJ5 442 aa13.23□□□□□ -0.29
TPM1-210ENST00000558264 SLKQ9H2G2 1235 aaPredicted RBP13.23□□□□□ -0.29
TPM1-210ENST00000558264 STK31Q9BXU1 1019 aa13.23□□□□□ -0.29
TPM1-210ENST00000558264 KIF24Q5T7B8 1368 aa13.22□□□□□ -0.29
TPM1-210ENST00000558264 PTPRCP08575 1304 aa13.22□□□□□ -0.29
TPM1-210ENST00000558264 SMARCA5O60264 1052 aaPredicted RBP13.22□□□□□ -0.29
TPM1-210ENST00000558264 DEKP35659 375 aaKnown RBP13.22□□□□□ -0.29
TPM1-210ENST00000558264 FKBP5Q13451 457 aaPredicted RBP13.22□□□□□ -0.29
TPM1-210ENST00000558264 MPRIPQ6WCQ1 1025 aa13.22□□□□□ -0.29
TPM1-210ENST00000558264 KCNH5Q8NCM2 988 aa13.22□□□□□ -0.29
TPM1-210ENST00000558264 AXIN2Q9Y2T1 843 aa13.22□□□□□ -0.29
TPM1-210ENST00000558264 EIF2S2P20042 333 aaKnown RBP13.22□□□□□ -0.29
TPM1-210ENST00000558264 TAF7Q15545 349 aaPredicted RBP13.22□□□□□ -0.29
TPM1-210ENST00000558264 CEP85Q6P2H3 762 aa13.22□□□□□ -0.29
TPM1-210ENST00000558264 RTL1A6NKG5 1358 aa13.21□□□□□ -0.29
TPM1-210ENST00000558264 KCNQ3O43525 872 aa13.21□□□□□ -0.29
TPM1-210ENST00000558264 OTUD7AQ8TE49 926 aaPredicted RBP13.21□□□□□ -0.29
TPM1-210ENST00000558264 C22orf23Q9BZE7 217 aa13.21□□□□□ -0.29
TPM1-210ENST00000558264 RGPD2P0DJD1 1756 aa13.21□□□□□ -0.29
TPM1-210ENST00000558264 ATP10DQ9P241 1426 aa13.21□□□□□ -0.29
TPM1-210ENST00000558264 FLIIQ13045 1269 aa13.21□□□□□ -0.3
TPM1-210ENST00000558264 ZNF530Q6P9A1 599 aaPredicted RBP13.21□□□□□ -0.3
TPM1-210ENST00000558264 HTATSF1O43719 755 aaKnown RBP13.2□□□□□ -0.3
TPM1-210ENST00000558264 ANKRD24Q8TF21 1146 aa13.2□□□□□ -0.3
TPM1-210ENST00000558264 ARHGEF25Q86VW2 580 aa13.2□□□□□ -0.3
TPM1-210ENST00000558264 ANKRD44Q8N8A2 993 aa13.2□□□□□ -0.3
TPM1-210ENST00000558264 USP54Q70EL1 1684 aa13.2□□□□□ -0.3
TPM1-210ENST00000558264 NFKBIBQ15653 356 aa13.19□□□□□ -0.3
TPM1-210ENST00000558264 CCDC30Q5VVM6 783 aa13.19□□□□□ -0.3
TPM1-210ENST00000558264 CABLES1Q8TDN4 633 aa13.19□□□□□ -0.3
TPM1-210ENST00000558264 PHAXQ9H814 394 aaKnown RBP13.19□□□□□ -0.3
TPM1-210ENST00000558264 ANXA1P04083 346 aa13.19□□□□□ -0.3
TPM1-210ENST00000558264 HDGFL1Q5TGJ6 251 aa13.19□□□□□ -0.3
TPM1-210ENST00000558264 TBC1D2Q9BYX2 928 aa13.19□□□□□ -0.3
TPM1-210ENST00000558264 C19orf44Q9H6X5 657 aa13.19□□□□□ -0.3
TPM1-210ENST00000558264 C1orf167Q5SNV9 1468 aa13.19□□□□□ -0.3
TPM1-210ENST00000558264 DCTPP1Q9H773 170 aa13.18□□□□□ -0.3
TPM1-210ENST00000558264 LRRC37A3O60309 1634 aa13.18□□□□□ -0.3
TPM1-210ENST00000558264 TMEM94Q12767 1356 aa13.18□□□□□ -0.3
TPM1-210ENST00000558264 ATF3P18847 181 aa13.17□□□□□ -0.3
TPM1-210ENST00000558264 BECN1Q14457 450 aa13.17□□□□□ -0.3
TPM1-210ENST00000558264 BMP2KLQ5H9B9 411 aa13.17□□□□□ -0.3
TPM1-210ENST00000558264 PXDNQ92626 1479 aa13.17□□□□□ -0.3
TPM1-210ENST00000558264 GSPT1P15170 499 aaKnown RBP13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms