RNA–Protein interactions for RNA: ENST00000558155.1

SPG11-208, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-208ENST00000558155 IL2RBP14784 551 aa7.47□□□□□ -1.21
SPG11-208ENST00000558155 SLC27A3Q5K4L6 730 aa7.47□□□□□ -1.21
SPG11-208ENST00000558155 NLRP2Q9NX02 1062 aa7.47□□□□□ -1.21
SPG11-208ENST00000558155 EVC2Q86UK5 1308 aa7.47□□□□□ -1.21
SPG11-208ENST00000558155 TTC21AQ8NDW8 1320 aa7.47□□□□□ -1.21
SPG11-208ENST00000558155 SLIT3O75094 1523 aa7.47□□□□□ -1.21
SPG11-208ENST00000558155 RGPD5Q99666 1765 aa7.46□□□□□ -1.21
SPG11-208ENST00000558155 CPSF1Q10570 1443 aaKnown RBP7.46□□□□□ -1.21
SPG11-208ENST00000558155 ZNF827Q17R98 1081 aa7.46□□□□□ -1.22
SPG11-208ENST00000558155 TFCP2L1Q9NZI6 479 aa7.46□□□□□ -1.22
SPG11-208ENST00000558155 KIAA1210Q9ULL0 1709 aa7.45□□□□□ -1.22
SPG11-208ENST00000558155 HMGB2P26583 209 aaKnown RBP7.45□□□□□ -1.22
SPG11-208ENST00000558155 ZNF579Q8NAF0 562 aaKnown RBP7.45□□□□□ -1.22
SPG11-208ENST00000558155 LRRC4BQ9NT99 713 aa7.45□□□□□ -1.22
SPG11-208ENST00000558155 WNK3Q9BYP7 1800 aa7.44□□□□□ -1.22
SPG11-208ENST00000558155 DDX54Q8TDD1 881 aaKnown RBP7.44□□□□□ -1.22
SPG11-208ENST00000558155 TNS2Q63HR2 1409 aa7.44□□□□□ -1.22
SPG11-208ENST00000558155 NLGN2Q8NFZ4 835 aa7.43□□□□□ -1.22
SPG11-208ENST00000558155 GPBP1L1Q9HC44 474 aaPredicted RBP7.43□□□□□ -1.22
SPG11-208ENST00000558155 CREBZFQ9NS37 354 aa7.43□□□□□ -1.22
SPG11-208ENST00000558155 NHSQ6T4R5 1651 aa7.43□□□□□ -1.22
SPG11-208ENST00000558155 PNPLA7Q6ZV29 1317 aa7.43□□□□□ -1.22
SPG11-208ENST00000558155 GALR2O43603 387 aaPredicted RBP7.42□□□□□ -1.22
SPG11-208ENST00000558155 HSPA6P17066 643 aa7.42□□□□□ -1.22
SPG11-208ENST00000558155 PRIM1P49642 420 aaKnown RBP7.42□□□□□ -1.22
SPG11-208ENST00000558155 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.42□□□□□ -1.22
SPG11-208ENST00000558155 ANKRD24Q8TF21 1146 aa7.42□□□□□ -1.22
SPG11-208ENST00000558155 SYTL4Q96C24 671 aaPredicted RBP7.42□□□□□ -1.22
SPG11-208ENST00000558155 BTAF1O14981 1849 aa7.42□□□□□ -1.22
SPG11-208ENST00000558155 ERBB3P21860 1342 aa7.42□□□□□ -1.22
SPG11-208ENST00000558155 KTN1Q86UP2 1357 aaKnown RBP7.42□□□□□ -1.22
SPG11-208ENST00000558155 TRPM1Q7Z4N2 1603 aa7.41□□□□□ -1.22
SPG11-208ENST00000558155 PIK3C2AO00443 1686 aa7.41□□□□□ -1.22
SPG11-208ENST00000558155 POTEB2H3BUK9 544 aa7.41□□□□□ -1.22
SPG11-208ENST00000558155 YBX3P16989 372 aaKnown RBP eCLIP7.41□□□□□ -1.221e-6■□□□□ 10.7
SPG11-208ENST00000558155 CLCN6P51797 869 aa7.41□□□□□ -1.22
SPG11-208ENST00000558155 DCBLD2Q96PD2 775 aa7.41□□□□□ -1.22
SPG11-208ENST00000558155 CD2APQ9Y5K6 639 aa7.41□□□□□ -1.22
SPG11-208ENST00000558155 QRICH2Q9H0J4 1663 aa7.41□□□□□ -1.22
SPG11-208ENST00000558155 KCNQ4P56696 695 aa7.4□□□□□ -1.22
SPG11-208ENST00000558155 COL23A1Q86Y22 540 aaPredicted RBP7.4□□□□□ -1.22
SPG11-208ENST00000558155 FLAD1Q8NFF5 587 aa7.4□□□□□ -1.22
SPG11-208ENST00000558155 OTUD5Q96G74 571 aa7.4□□□□□ -1.22
SPG11-208ENST00000558155 CCNL1Q9UK58 526 aaPredicted RBP7.4□□□□□ -1.22
SPG11-208ENST00000558155 USP31Q70CQ4 1352 aa7.4□□□□□ -1.22
SPG11-208ENST00000558155 ABCC6O95255 1503 aa7.4□□□□□ -1.22
SPG11-208ENST00000558155 PAPPAQ13219 1627 aa7.4□□□□□ -1.22
SPG11-208ENST00000558155 QSER1Q2KHR3 1735 aa7.4□□□□□ -1.23
SPG11-208ENST00000558155 COL24A1Q17RW2 1714 aa7.39□□□□□ -1.23
SPG11-208ENST00000558155 SHANK3Q9BYB0 1731 aa7.39□□□□□ -1.23
SPG11-208ENST00000558155 ATP10DQ9P241 1426 aa7.39□□□□□ -1.23
SPG11-208ENST00000558155 HDGFL2Q7Z4V5 671 aaPredicted RBP7.39□□□□□ -1.23
SPG11-208ENST00000558155 ZCRB1Q8TBF4 217 aaKnown RBP7.39□□□□□ -1.23
SPG11-208ENST00000558155 TMC1Q8TDI8 760 aa7.39□□□□□ -1.23
SPG11-208ENST00000558155 IP6K1Q92551 441 aa7.39□□□□□ -1.23
SPG11-208ENST00000558155 LTV1Q96GA3 475 aaPredicted RBP7.39□□□□□ -1.23
SPG11-208ENST00000558155 PLSCR2Q9NRY7 297 aa7.39□□□□□ -1.23
SPG11-208ENST00000558155 NFAT5O94916 1531 aa7.38□□□□□ -1.23
SPG11-208ENST00000558155 ANKRD36BQ8N2N9 1353 aa7.38□□□□□ -1.23
SPG11-208ENST00000558155 NME9Q86XW9 330 aa7.38□□□□□ -1.23
SPG11-208ENST00000558155 ZNF526Q8TF50 670 aaPredicted RBP7.38□□□□□ -1.23
SPG11-208ENST00000558155 L3MBTL2Q969R5 705 aa7.38□□□□□ -1.23
SPG11-208ENST00000558155 USP47Q96K76 1375 aa7.37□□□□□ -1.23
SPG11-208ENST00000558155 APLP1P51693 650 aa7.37□□□□□ -1.23
SPG11-208ENST00000558155 MSL1Q68DK7 614 aa7.37□□□□□ -1.23
SPG11-208ENST00000558155 TERF2IPQ9NYB0 399 aa7.37□□□□□ -1.23
SPG11-208ENST00000558155 AMPHP49418 695 aa7.36□□□□□ -1.23
SPG11-208ENST00000558155 ROCK2O75116 1388 aaKnown RBP7.35□□□□□ -1.23
SPG11-208ENST00000558155 CGNL1Q0VF96 1302 aa7.35□□□□□ -1.23
SPG11-208ENST00000558155 SLC12A5Q9H2X9 1139 aa7.35□□□□□ -1.23
SPG11-208ENST00000558155 LTN1O94822 1766 aa7.35□□□□□ -1.23
SPG11-208ENST00000558155 SBNO2Q9Y2G9 1366 aa7.34□□□□□ -1.23
SPG11-208ENST00000558155 TUBGCP6Q96RT7 1819 aa7.34□□□□□ -1.23
SPG11-208ENST00000558155 KIF3CO14782 793 aa7.34□□□□□ -1.23
SPG11-208ENST00000558155 SMARCC1Q92922 1105 aaPredicted RBP7.34□□□□□ -1.23
SPG11-208ENST00000558155 COG3Q96JB2 828 aa7.34□□□□□ -1.23
SPG11-208ENST00000558155 PUS7Q96PZ0 661 aaKnown RBP7.34□□□□□ -1.23
SPG11-208ENST00000558155 PHF12Q96QT6 1004 aa7.34□□□□□ -1.23
SPG11-208ENST00000558155 LY75O60449 1722 aa7.34□□□□□ -1.23
SPG11-208ENST00000558155 ADCY9O60503 1353 aa7.33□□□□□ -1.24
SPG11-208ENST00000558155 IGSF1Q8N6C5 1336 aa7.33□□□□□ -1.24
SPG11-208ENST00000558155 MON2Q7Z3U7 1717 aa7.33□□□□□ -1.24
SPG11-208ENST00000558155 TOMM70O94826 608 aa7.33□□□□□ -1.24
SPG11-208ENST00000558155 TATP17735 454 aaPredicted RBP7.33□□□□□ -1.24
SPG11-208ENST00000558155 HOXC9P31274 260 aa7.33□□□□□ -1.24
SPG11-208ENST00000558155 MPRIPQ6WCQ1 1025 aa7.33□□□□□ -1.24
SPG11-208ENST00000558155 DNAJC5GQ8N7S2 189 aa7.33□□□□□ -1.24
SPG11-208ENST00000558155 RAPGEF4Q8WZA2 1011 aa7.33□□□□□ -1.24
SPG11-208ENST00000558155 AK7Q96M32 723 aa7.33□□□□□ -1.24
SPG11-208ENST00000558155 EDC4Q6P2E9 1401 aaKnown RBP7.33□□□□□ -1.24
SPG11-208ENST00000558155 UTRNP46939 3433 aa7.33□□□□□ -1.24
SPG11-208ENST00000558155 NSD2O96028 1365 aa7.33□□□□□ -1.24
SPG11-208ENST00000558155 NEUROD1Q13562 356 aa7.32□□□□□ -1.24
SPG11-208ENST00000558155 WWC3Q9ULE0 1092 aa7.32□□□□□ -1.24
SPG11-208ENST00000558155 USP54Q70EL1 1684 aa7.32□□□□□ -1.24
SPG11-208ENST00000558155 FAM208AQ9UK61 1670 aaKnown RBP7.32□□□□□ -1.24
SPG11-208ENST00000558155 MAP3K19Q56UN5 1328 aa7.31□□□□□ -1.24
SPG11-208ENST00000558155 SLC24A1O60721 1099 aa7.31□□□□□ -1.24
SPG11-208ENST00000558155 PHF14O94880 888 aa7.31□□□□□ -1.24
SPG11-208ENST00000558155 MNX1P50219 401 aaPredicted RBP7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms