RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 GDF11O95390 407 aa6.76□□□□□ -1.33
VPS13C-205ENST00000558088 FBXO45P0C2W1 286 aa6.76□□□□□ -1.33
VPS13C-205ENST00000558088 SLURP2P0DP57 97 aa6.76□□□□□ -1.33
VPS13C-205ENST00000558088 RNF144AP50876 292 aaPredicted RBP6.76□□□□□ -1.33
VPS13C-205ENST00000558088 MARSP56192 900 aaKnown RBP6.76□□□□□ -1.33
VPS13C-205ENST00000558088 MAP3K10Q02779 954 aa6.76□□□□□ -1.33
VPS13C-205ENST00000558088 ZNF385CQ66K41 422 aaPredicted RBP6.76□□□□□ -1.33
VPS13C-205ENST00000558088 PRICKLE2Q7Z3G6 844 aa6.76□□□□□ -1.33
VPS13C-205ENST00000558088 IL27Q8NEV9 243 aa6.76□□□□□ -1.33
VPS13C-205ENST00000558088 NLRP3Q96P20 1036 aa6.76□□□□□ -1.33
VPS13C-205ENST00000558088 SENP3-EIF4A1A0A087X0R7 540 aa6.75□□□□□ -1.33
VPS13C-205ENST00000558088 GPC1P35052 558 aa6.75□□□□□ -1.33
VPS13C-205ENST00000558088 RASSF7Q02833 373 aa6.75□□□□□ -1.33
VPS13C-205ENST00000558088 CYP2U1Q7Z449 544 aa6.75□□□□□ -1.33
VPS13C-205ENST00000558088 GMCL1Q96IK5 515 aa6.75□□□□□ -1.33
VPS13C-205ENST00000558088 ADAMTS2O95450 1211 aa6.74□□□□□ -1.33
VPS13C-205ENST00000558088 RHOQP17081 205 aa6.74□□□□□ -1.33
VPS13C-205ENST00000558088 NR1H3Q13133 447 aa6.74□□□□□ -1.33
VPS13C-205ENST00000558088 SLC27A3Q5K4L6 730 aa6.74□□□□□ -1.33
VPS13C-205ENST00000558088 CC2D2BQ6DHV5 1058 aa6.74□□□□□ -1.33
VPS13C-205ENST00000558088 RIPOR1Q6ZS17 1223 aa6.74□□□□□ -1.33
VPS13C-205ENST00000558088 KCTD17Q8N5Z5 321 aa6.74□□□□□ -1.33
VPS13C-205ENST00000558088 KDF1Q8NAX2 398 aaPredicted RBP6.74□□□□□ -1.33
VPS13C-205ENST00000558088 H7C1W4 665 aa6.73□□□□□ -1.33
VPS13C-205ENST00000558088 SRSF11Q05519 484 aaKnown RBP6.73□□□□□ -1.33
VPS13C-205ENST00000558088 SCARF2Q96GP6 870 aaPredicted RBP6.73□□□□□ -1.33
VPS13C-205ENST00000558088 GJD4Q96KN9 370 aaPredicted RBP6.73□□□□□ -1.33
VPS13C-205ENST00000558088 ENAMQ9NRM1 1142 aa6.73□□□□□ -1.33
VPS13C-205ENST00000558088 A0A1W2PRU2 124 aa6.72□□□□□ -1.33
VPS13C-205ENST00000558088 ERVK-9P63128 1117 aa6.72□□□□□ -1.33
VPS13C-205ENST00000558088 TRIM22Q8IYM9 498 aa6.72□□□□□ -1.33
VPS13C-205ENST00000558088 TRERF1Q96PN7 1200 aa6.72□□□□□ -1.33
VPS13C-205ENST00000558088 PCDHB11Q9Y5F2 797 aa6.72□□□□□ -1.33
VPS13C-205ENST00000558088 NDUFB9Q9Y6M9 179 aa6.72□□□□□ -1.33
VPS13C-205ENST00000558088 SLC24A1O60721 1099 aa6.71□□□□□ -1.34
VPS13C-205ENST00000558088 KANK3Q6NY19 840 aa6.71□□□□□ -1.34
VPS13C-205ENST00000558088 BANK1Q8NDB2 785 aa6.71□□□□□ -1.34
VPS13C-205ENST00000558088 WHAMMQ8TF30 809 aa6.71□□□□□ -1.34
VPS13C-205ENST00000558088 DYRK1BQ9Y463 629 aa6.71□□□□□ -1.34
VPS13C-205ENST00000558088 SOCS7O14512 581 aa6.7□□□□□ -1.34
VPS13C-205ENST00000558088 IRS1P35568 1242 aa6.7□□□□□ -1.34
VPS13C-205ENST00000558088 CLN3Q13286 438 aa6.7□□□□□ -1.34
VPS13C-205ENST00000558088 ZNF837Q96EG3 531 aaPredicted RBP6.7□□□□□ -1.34
VPS13C-205ENST00000558088 GAS2L1Q99501 681 aaPredicted RBP6.7□□□□□ -1.34
VPS13C-205ENST00000558088 CUEDC1Q9NWM3 386 aaPredicted RBP6.7□□□□□ -1.34
VPS13C-205ENST00000558088 NSFL1CQ9UNZ2 370 aaKnown RBP6.7□□□□□ -1.34
VPS13C-205ENST00000558088 ARHGEF15O94989 841 aa6.69□□□□□ -1.34
VPS13C-205ENST00000558088 MYCP01106 439 aaPredicted RBP6.69□□□□□ -1.34
VPS13C-205ENST00000558088 GTF2E1P29083 439 aaPredicted RBP6.69□□□□□ -1.34
VPS13C-205ENST00000558088 GSK3AP49840 483 aa6.69□□□□□ -1.34
VPS13C-205ENST00000558088 GAS6Q14393 721 aa6.69□□□□□ -1.34
VPS13C-205ENST00000558088 MBIPQ9NS73 344 aa6.69□□□□□ -1.34
VPS13C-205ENST00000558088 POU4F2Q12837 409 aa6.68□□□□□ -1.34
VPS13C-205ENST00000558088 WDR44Q5JSH3 913 aa6.68□□□□□ -1.34
VPS13C-205ENST00000558088 NBPF10Q6P3W6 841 aaKnown RBP6.68□□□□□ -1.34
VPS13C-205ENST00000558088 TAS1R3Q7RTX0 852 aa6.68□□□□□ -1.34
VPS13C-205ENST00000558088 PODNQ7Z5L7 613 aa6.68□□□□□ -1.34
VPS13C-205ENST00000558088 NBPF15Q8N660 670 aa6.68□□□□□ -1.34
VPS13C-205ENST00000558088 ARHGEF10LQ9HCE6 1279 aa6.68□□□□□ -1.34
VPS13C-205ENST00000558088 PRM3Q9NNZ6 103 aa6.68□□□□□ -1.34
VPS13C-205ENST00000558088 DNMT3AQ9Y6K1 912 aaPredicted RBP6.68□□□□□ -1.34
VPS13C-205ENST00000558088 GPR25O00155 361 aa6.67□□□□□ -1.34
VPS13C-205ENST00000558088 CELA2BP08218 269 aaPredicted RBP6.67□□□□□ -1.34
VPS13C-205ENST00000558088 LYPD4Q6UWN0 246 aa6.67□□□□□ -1.34
VPS13C-205ENST00000558088 GTPBP3Q969Y2 492 aaKnown RBP6.67□□□□□ -1.34
VPS13C-205ENST00000558088 TIMMDC1Q9NPL8 285 aa6.67□□□□□ -1.34
VPS13C-205ENST00000558088 PHF20L1A8MW92 1017 aa6.66□□□□□ -1.34
VPS13C-205ENST00000558088 WASLO00401 505 aaPredicted RBP6.66□□□□□ -1.34
VPS13C-205ENST00000558088 GNRH1P01148 92 aa6.66□□□□□ -1.34
VPS13C-205ENST00000558088 SCTRP47872 440 aa6.66□□□□□ -1.34
VPS13C-205ENST00000558088 FOXK2Q01167 660 aa6.66□□□□□ -1.34
VPS13C-205ENST00000558088 DBN1Q16643 649 aa6.66□□□□□ -1.34
VPS13C-205ENST00000558088 NEDD1Q8NHV4 660 aa6.66□□□□□ -1.34
VPS13C-205ENST00000558088 GRIP2Q9C0E4 1043 aa6.66□□□□□ -1.34
VPS13C-205ENST00000558088 IGF1RP08069 1367 aa6.66□□□□□ -1.34
VPS13C-205ENST00000558088 SPATA31C2B4DYI2 1134 aa6.65□□□□□ -1.34
VPS13C-205ENST00000558088 IGHA1P01876 353 aa6.65□□□□□ -1.34
VPS13C-205ENST00000558088 F11P03951 625 aa6.65□□□□□ -1.34
VPS13C-205ENST00000558088 MX2P20592 715 aa6.65□□□□□ -1.34
VPS13C-205ENST00000558088 BRPF1P55201 1214 aaPredicted RBP6.65□□□□□ -1.34
VPS13C-205ENST00000558088 GPAT2Q6NUI2 795 aa6.65□□□□□ -1.34
VPS13C-205ENST00000558088 MTMR14Q8NCE2 650 aa6.65□□□□□ -1.34
VPS13C-205ENST00000558088 NUCKS1Q9H1E3 243 aaKnown RBP6.65□□□□□ -1.34
VPS13C-205ENST00000558088 OSBPL3Q9H4L5 887 aa6.65□□□□□ -1.34
VPS13C-205ENST00000558088 TRAK2O60296 914 aa6.64□□□□□ -1.35
VPS13C-205ENST00000558088 BCRP11274 1271 aa6.64□□□□□ -1.35
VPS13C-205ENST00000558088 GNASQ5JWF2 1037 aa6.64□□□□□ -1.35
VPS13C-205ENST00000558088 CNKSR1Q969H4 720 aa6.64□□□□□ -1.35
VPS13C-205ENST00000558088 ESYT1Q9BSJ8 1104 aa6.64□□□□□ -1.35
VPS13C-205ENST00000558088 RAB6BQ9NRW1 208 aa6.64□□□□□ -1.35
VPS13C-205ENST00000558088 CSB-PGBD3P0DP91 1061 aa6.63□□□□□ -1.35
VPS13C-205ENST00000558088 EIF4G2P78344 907 aaKnown RBP eCLIP6.63□□□□□ -1.35
VPS13C-205ENST00000558088 SUZ12Q15022 739 aaKnown RBP6.63□□□□□ -1.35
VPS13C-205ENST00000558088 ESCO1Q5FWF5 840 aa6.63□□□□□ -1.35
VPS13C-205ENST00000558088 PGBD3Q8N328 593 aa6.63□□□□□ -1.35
VPS13C-205ENST00000558088 BEND7Q8N7W2 519 aaPredicted RBP6.63□□□□□ -1.35
VPS13C-205ENST00000558088 ZSCAN10Q96SZ4 725 aaPredicted RBP6.63□□□□□ -1.35
VPS13C-205ENST00000558088 PHF24Q9UPV7 400 aa6.63□□□□□ -1.35
VPS13C-205ENST00000558088 A0A1B0GTH6 734 aa6.62□□□□□ -1.35
VPS13C-205ENST00000558088 MAP2K3P46734 347 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms