RNA–Protein interactions for RNA: ENST00000558080.1

SPG11-205, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 1 (best)

Gene SPG11, Length 759 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-205ENST00000558080 TRPC5Q9UL62 973 aaPredicted RBP10.88□□□□□ -0.67
SPG11-205ENST00000558080 BRWD3Q6RI45 1802 aa10.88□□□□□ -0.67
SPG11-205ENST00000558080 PLCH1Q4KWH8 1693 aa10.88□□□□□ -0.67
SPG11-205ENST00000558080 QRICH2Q9H0J4 1663 aa10.88□□□□□ -0.67
SPG11-205ENST00000558080 EIF3AQ14152 1382 aaKnown RBP10.88□□□□□ -0.67
SPG11-205ENST00000558080 UPF1Q92900 1129 aaKnown RBP eCLIP10.87□□□□□ -0.67
SPG11-205ENST00000558080 L3MBTL2Q969R5 705 aa10.87□□□□□ -0.67
SPG11-205ENST00000558080 PCGF6Q9BYE7 350 aa10.87□□□□□ -0.67
SPG11-205ENST00000558080 SBNO1A3KN83 1393 aa10.87□□□□□ -0.67
SPG11-205ENST00000558080 TRPM1Q7Z4N2 1603 aa10.87□□□□□ -0.67
SPG11-205ENST00000558080 ATRNO75882 1429 aa10.86□□□□□ -0.67
SPG11-205ENST00000558080 NGDNQ8NEJ9 315 aaKnown RBP10.86□□□□□ -0.67
SPG11-205ENST00000558080 CDK19Q9BWU1 502 aa10.86□□□□□ -0.67
SPG11-205ENST00000558080 NWD2Q9ULI1 1742 aa10.86□□□□□ -0.67
SPG11-205ENST00000558080 BCL9LQ86UU0 1499 aa10.86□□□□□ -0.67
SPG11-205ENST00000558080 TOPAZ1Q8N9V7 1692 aa10.85□□□□□ -0.67
SPG11-205ENST00000558080 CRYBG1Q9Y4K1 1723 aa10.85□□□□□ -0.67
SPG11-205ENST00000558080 NUDT16Q96DE0 195 aaKnown RBP10.85□□□□□ -0.67
SPG11-205ENST00000558080 BCL2L12Q9HB09 334 aa10.85□□□□□ -0.67
SPG11-205ENST00000558080 VPS9D1Q9Y2B5 631 aa10.85□□□□□ -0.67
SPG11-205ENST00000558080 GPRASP1Q5JY77 1395 aa10.85□□□□□ -0.67
SPG11-205ENST00000558080 ZNF454Q8N9F8 522 aa10.84□□□□□ -0.67
SPG11-205ENST00000558080 ARHGEF10O15013 1369 aa10.84□□□□□ -0.67
SPG11-205ENST00000558080 ATP7BP35670 1465 aa10.83□□□□□ -0.68
SPG11-205ENST00000558080 PDE4AP27815 886 aa10.83□□□□□ -0.68
SPG11-205ENST00000558080 UNC5CLQ8IV45 518 aa10.83□□□□□ -0.68
SPG11-205ENST00000558080 KCTD12Q96CX2 325 aaKnown RBP10.83□□□□□ -0.68
SPG11-205ENST00000558080 SLC4A5Q9BY07 1137 aa10.83□□□□□ -0.68
SPG11-205ENST00000558080 SLIT2O94813 1529 aa10.83□□□□□ -0.68
SPG11-205ENST00000558080 GLI3P10071 1580 aa10.82□□□□□ -0.68
SPG11-205ENST00000558080 FOSBP53539 338 aa10.82□□□□□ -0.68
SPG11-205ENST00000558080 GJD4Q96KN9 370 aaPredicted RBP10.82□□□□□ -0.68
SPG11-205ENST00000558080 ANO8Q9HCE9 1232 aaPredicted RBP10.82□□□□□ -0.68
SPG11-205ENST00000558080 CENPJQ9HC77 1338 aaPredicted RBP10.82□□□□□ -0.68
SPG11-205ENST00000558080 NRAPQ86VF7 1730 aa10.81□□□□□ -0.68
SPG11-205ENST00000558080 COL14A1Q05707 1796 aaKnown RBP10.81□□□□□ -0.68
SPG11-205ENST00000558080 FAM83GA6ND36 823 aa10.81□□□□□ -0.68
SPG11-205ENST00000558080 PHRF1Q9P1Y6 1649 aaKnown RBP10.8□□□□□ -0.68
SPG11-205ENST00000558080 GTPBP6O43824 516 aaPredicted RBP10.8□□□□□ -0.68
SPG11-205ENST00000558080 SRPK2P78362 688 aaKnown RBP10.8□□□□□ -0.68
SPG11-205ENST00000558080 NUTM2GQ5VZR2 741 aa10.8□□□□□ -0.68
SPG11-205ENST00000558080 CCDC9Q9Y3X0 531 aaKnown RBP10.8□□□□□ -0.68
SPG11-205ENST00000558080 ACEP12821 1306 aa10.8□□□□□ -0.68
SPG11-205ENST00000558080 RALGAPBQ86X10 1494 aa10.8□□□□□ -0.68
SPG11-205ENST00000558080 NBPF8Q3BBV2 869 aa10.79□□□□□ -0.68
SPG11-205ENST00000558080 ATAD2Q6PL18 1390 aa10.78□□□□□ -0.68
SPG11-205ENST00000558080 PLEKHG3A1L390 1219 aa10.78□□□□□ -0.68
SPG11-205ENST00000558080 POLR3AO14802 1390 aaPredicted RBP10.77□□□□□ -0.68
SPG11-205ENST00000558080 ROCK2O75116 1388 aaKnown RBP10.77□□□□□ -0.68
SPG11-205ENST00000558080 AKAP12Q02952 1782 aa10.77□□□□□ -0.68
SPG11-205ENST00000558080 PPIP5K1Q6PFW1 1433 aa10.77□□□□□ -0.68
SPG11-205ENST00000558080 BHMG1C9JSJ3 638 aaPredicted RBP10.77□□□□□ -0.69
SPG11-205ENST00000558080 PTPREP23469 700 aa10.77□□□□□ -0.69
SPG11-205ENST00000558080 VPS72Q15906 364 aa10.77□□□□□ -0.69
SPG11-205ENST00000558080 BTG4Q9NY30 223 aa10.77□□□□□ -0.69
SPG11-205ENST00000558080 EVI5O60447 810 aa10.76□□□□□ -0.69
SPG11-205ENST00000558080 ZC3H6P61129 1189 aaKnown RBP10.76□□□□□ -0.69
SPG11-205ENST00000558080 MFSD10Q14728 455 aa10.75□□□□□ -0.69
SPG11-205ENST00000558080 CHRNA2Q15822 529 aa10.75□□□□□ -0.69
SPG11-205ENST00000558080 SEPT12Q8IYM1 358 aa10.75□□□□□ -0.69
SPG11-205ENST00000558080 ABTB2Q8N961 1025 aa10.75□□□□□ -0.69
SPG11-205ENST00000558080 DDX27Q96GQ7 796 aaKnown RBP10.75□□□□□ -0.69
SPG11-205ENST00000558080 ZBED2Q9BTP6 218 aa10.75□□□□□ -0.69
SPG11-205ENST00000558080 PRDM11Q9NQV5 511 aa10.75□□□□□ -0.69
SPG11-205ENST00000558080 CABP1Q9NZU7 370 aa10.75□□□□□ -0.69
SPG11-205ENST00000558080 RGPD5Q99666 1765 aa10.75□□□□□ -0.69
SPG11-205ENST00000558080 LARP6Q9BRS8 491 aaKnown RBP10.74□□□□□ -0.69
SPG11-205ENST00000558080 EVC2Q86UK5 1308 aa10.74□□□□□ -0.69
SPG11-205ENST00000558080 KIAA0232Q92628 1395 aa10.74□□□□□ -0.69
SPG11-205ENST00000558080 TONSLQ96HA7 1378 aa10.74□□□□□ -0.69
SPG11-205ENST00000558080 EP400Q96L91 3159 aa10.73□□□□□ -0.69
SPG11-205ENST00000558080 A0A0G2JS52 829 aa10.73□□□□□ -0.69
SPG11-205ENST00000558080 MYT1Q01538 1121 aa10.73□□□□□ -0.69
SPG11-205ENST00000558080 FAM98CQ17RN3 349 aaKnown RBP10.73□□□□□ -0.69
SPG11-205ENST00000558080 ZDHHC16Q969W1 377 aa10.73□□□□□ -0.69
SPG11-205ENST00000558080 NRKQ7Z2Y5 1582 aa10.73□□□□□ -0.69
SPG11-205ENST00000558080 ONECUT3O60422 494 aaPredicted RBP10.72□□□□□ -0.69
SPG11-205ENST00000558080 CARD11Q9BXL7 1154 aa10.72□□□□□ -0.69
SPG11-205ENST00000558080 ADAM33Q9BZ11 813 aa10.72□□□□□ -0.69
SPG11-205ENST00000558080 PIK3C2AO00443 1686 aa10.72□□□□□ -0.69
SPG11-205ENST00000558080 SPATA31A5Q5VU36 1347 aa10.71□□□□□ -0.69
SPG11-205ENST00000558080 NLRP13Q86W25 1043 aa10.71□□□□□ -0.69
SPG11-205ENST00000558080 SPATA31A7Q8IWB4 1347 aa10.71□□□□□ -0.69
SPG11-205ENST00000558080 STRN4Q9NRL3 753 aa10.71□□□□□ -0.69
SPG11-205ENST00000558080 MON2Q7Z3U7 1717 aa10.7□□□□□ -0.7
SPG11-205ENST00000558080 USP6P35125 1406 aa10.7□□□□□ -0.7
SPG11-205ENST00000558080 ZBTB7CA1YPR0 619 aa10.7□□□□□ -0.7
SPG11-205ENST00000558080 PTPN5P54829 565 aa10.7□□□□□ -0.7
SPG11-205ENST00000558080 THSD4Q6ZMP0 1018 aa10.7□□□□□ -0.7
SPG11-205ENST00000558080 KRT27Q7Z3Y8 459 aa10.7□□□□□ -0.7
SPG11-205ENST00000558080 CCDC125Q86Z20 511 aa10.7□□□□□ -0.7
SPG11-205ENST00000558080 KAT6BQ8WYB5 2073 aa10.7□□□□□ -0.7
SPG11-205ENST00000558080 LMO7Q8WWI1 1683 aa10.69□□□□□ -0.7
SPG11-205ENST00000558080 CAMTA1Q9Y6Y1 1673 aa10.69□□□□□ -0.7
SPG11-205ENST00000558080 USP19O94966 1318 aa10.69□□□□□ -0.7
SPG11-205ENST00000558080 GCP02774 474 aa10.69□□□□□ -0.7
SPG11-205ENST00000558080 EVA1CP58658 441 aa10.69□□□□□ -0.7
SPG11-205ENST00000558080 MAP3K9P80192 1104 aa10.69□□□□□ -0.7
SPG11-205ENST00000558080 IFFO2Q5TF58 517 aa10.69□□□□□ -0.7
SPG11-205ENST00000558080 THSD7AQ9UPZ6 1657 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms