RNA–Protein interactions for RNA: ENST00000558040.5

SNX1-203, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 774 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-203ENST00000558040 GOLGA2Q08379 1002 aa22.09■■□□□ 1.13
SNX1-203ENST00000558040 UNC5CLQ8IV45 518 aa22.09■■□□□ 1.13
SNX1-203ENST00000558040 WDR63Q8IWG1 891 aa22.09■■□□□ 1.13
SNX1-203ENST00000558040 FNBP4Q8N3X1 1017 aaPredicted RBP22.09■■□□□ 1.13
SNX1-203ENST00000558040 MEGF6O75095 1541 aa22.08■■□□□ 1.13
SNX1-203ENST00000558040 IL2RBP14784 551 aa22.08■■□□□ 1.13
SNX1-203ENST00000558040 CALD1Q05682 793 aaKnown RBP22.08■■□□□ 1.13
SNX1-203ENST00000558040 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.08■■□□□ 1.135e-7■■□□□ 12.3
SNX1-203ENST00000558040 TRIM35Q9UPQ4 493 aa22.08■■□□□ 1.13
SNX1-203ENST00000558040 OVOS2A0A0G2JMS6 1433 aa22.07■■□□□ 1.12
SNX1-203ENST00000558040 SPG7Q9UQ90 795 aa22.07■■□□□ 1.12
SNX1-203ENST00000558040 DLG5Q8TDM6 1919 aa22.07■■□□□ 1.12
SNX1-203ENST00000558040 HTATSF1O43719 755 aaKnown RBP22.06■■□□□ 1.12
SNX1-203ENST00000558040 RTF1Q92541 710 aaKnown RBP22.06■■□□□ 1.12
SNX1-203ENST00000558040 USP35Q9P2H5 1018 aa22.06■■□□□ 1.12
SNX1-203ENST00000558040 MAP3K5Q99683 1374 aa22.06■■□□□ 1.12
SNX1-203ENST00000558040 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.06■■□□□ 1.12
SNX1-203ENST00000558040 BCL9LQ86UU0 1499 aa22.05■■□□□ 1.12
SNX1-203ENST00000558040 GNAT3A8MTJ3 354 aa22.05■■□□□ 1.12
SNX1-203ENST00000558040 C1orf141Q5JVX7 400 aa22.05■■□□□ 1.12
SNX1-203ENST00000558040 ZNF530Q6P9A1 599 aaPredicted RBP22.05■■□□□ 1.12
SNX1-203ENST00000558040 THRAP3Q9Y2W1 955 aaKnown RBP22.05■■□□□ 1.12
SNX1-203ENST00000558040 PKD1L3Q7Z443 1732 aa22.04■■□□□ 1.12
SNX1-203ENST00000558040 E9PSI1 815 aa22.04■■□□□ 1.12
SNX1-203ENST00000558040 USP21Q9UK80 565 aa22.04■■□□□ 1.12
SNX1-203ENST00000558040 IL16Q14005 1332 aa22.04■■□□□ 1.12
SNX1-203ENST00000558040 SPATA31A1Q5TZJ5 1347 aa22.04■■□□□ 1.12
SNX1-203ENST00000558040 SPATA31A5Q5VU36 1347 aa22.04■■□□□ 1.12
SNX1-203ENST00000558040 SPATA31A7Q8IWB4 1347 aa22.04■■□□□ 1.12
SNX1-203ENST00000558040 VPS72Q15906 364 aa22.03■■□□□ 1.12
SNX1-203ENST00000558040 AKAP4Q5JQC9 854 aa22.03■■□□□ 1.12
SNX1-203ENST00000558040 CDCA7Q9BWT1 371 aaPredicted RBP22.03■■□□□ 1.12
SNX1-203ENST00000558040 CCDC9Q9Y3X0 531 aaKnown RBP22.03■■□□□ 1.12
SNX1-203ENST00000558040 SLFN5Q08AF3 891 aa22.01■■□□□ 1.11
SNX1-203ENST00000558040 CDCA7LQ96GN5 454 aa22.01■■□□□ 1.11
SNX1-203ENST00000558040 AFF2P51816 1311 aa22.01■■□□□ 1.11
SNX1-203ENST00000558040 DISP2A7MBM2 1401 aa22■■□□□ 1.11
SNX1-203ENST00000558040 ZCRB1Q8TBF4 217 aaKnown RBP22■■□□□ 1.11
SNX1-203ENST00000558040 MYH16Q9H6N6 1097 aa22■■□□□ 1.11
SNX1-203ENST00000558040 WNK3Q9BYP7 1800 aa22■■□□□ 1.11
SNX1-203ENST00000558040 PCDH11XQ9BZA7 1347 aa22■■□□□ 1.11
SNX1-203ENST00000558040 PCDH11YQ9BZA8 1340 aa22■■□□□ 1.11
SNX1-203ENST00000558040 BARGINQ6ZT62 677 aa21.98■■□□□ 1.11
SNX1-203ENST00000558040 MCM10Q7L590 875 aa21.98■■□□□ 1.11
SNX1-203ENST00000558040 IFNL2Q8IZJ0 200 aa21.98■■□□□ 1.11
SNX1-203ENST00000558040 HSP90AB1P08238 724 aaKnown RBP21.97■■□□□ 1.11
SNX1-203ENST00000558040 DCTN1Q14203 1278 aa21.97■■□□□ 1.11
SNX1-203ENST00000558040 THUMPD2Q9BTF0 503 aaKnown RBP21.97■■□□□ 1.11
SNX1-203ENST00000558040 PHKG2P15735 406 aa21.96■■□□□ 1.11
SNX1-203ENST00000558040 GNAI1P63096 354 aa21.96■■□□□ 1.11
SNX1-203ENST00000558040 IFT57Q9NWB7 429 aa21.96■■□□□ 1.11
SNX1-203ENST00000558040 LRRC37A3O60309 1634 aa21.95■■□□□ 1.1
SNX1-203ENST00000558040 DUSP27Q5VZP5 1158 aa21.95■■□□□ 1.1
SNX1-203ENST00000558040 TRMT2AQ8IZ69 625 aaKnown RBP21.95■■□□□ 1.1
SNX1-203ENST00000558040 SPINK5Q9NQ38 1064 aaPredicted RBP21.95■■□□□ 1.1
SNX1-203ENST00000558040 TRPC5Q9UL62 973 aaPredicted RBP21.95■■□□□ 1.1
SNX1-203ENST00000558040 CYP27B1O15528 508 aa21.93■■□□□ 1.1
SNX1-203ENST00000558040 ATRNO75882 1429 aa21.93■■□□□ 1.1
SNX1-203ENST00000558040 TNS2Q63HR2 1409 aa21.93■■□□□ 1.1
SNX1-203ENST00000558040 IL17REQ8NFR9 667 aa21.93■■□□□ 1.1
SNX1-203ENST00000558040 CEMIPQ8WUJ3 1361 aa21.93■■□□□ 1.1
SNX1-203ENST00000558040 CFAP44Q96MT7 982 aa21.93■■□□□ 1.1
SNX1-203ENST00000558040 EXOC5O00471 708 aa21.92■■□□□ 1.1
SNX1-203ENST00000558040 RNMTO43148 476 aaKnown RBP21.92■■□□□ 1.1
SNX1-203ENST00000558040 MPRIPQ6WCQ1 1025 aa21.92■■□□□ 1.1
SNX1-203ENST00000558040 DCAF5Q96JK2 942 aa21.92■■□□□ 1.1
SNX1-203ENST00000558040 LAS1LQ9Y4W2 734 aaKnown RBP21.92■■□□□ 1.1
SNX1-203ENST00000558040 SHANK3Q9BYB0 1731 aa21.92■■□□□ 1.1
SNX1-203ENST00000558040 ADAMTS7Q9UKP4 1686 aa21.91■■□□□ 1.1
SNX1-203ENST00000558040 FANCIQ9NVI1 1328 aa21.9■■□□□ 1.1
SNX1-203ENST00000558040 ZNF853P0CG23 659 aa21.9■■□□□ 1.1
SNX1-203ENST00000558040 TEFQ10587 303 aa21.9■■□□□ 1.1
SNX1-203ENST00000558040 DDX54Q8TDD1 881 aaKnown RBP21.9■■□□□ 1.1
SNX1-203ENST00000558040 GJD4Q96KN9 370 aaPredicted RBP21.9■■□□□ 1.1
SNX1-203ENST00000558040 DDB1Q16531 1140 aa21.89■■□□□ 1.09
SNX1-203ENST00000558040 ZNF772Q68DY9 489 aaPredicted RBP21.89■■□□□ 1.09
SNX1-203ENST00000558040 LGR6Q9HBX8 967 aa21.89■■□□□ 1.09
SNX1-203ENST00000558040 BABAM1Q9NWV8 329 aa21.89■■□□□ 1.09
SNX1-203ENST00000558040 KDM6AO15550 1401 aaPredicted RBP21.89■■□□□ 1.09
SNX1-203ENST00000558040 NKX1-1Q15270 411 aaPredicted RBP21.88■■□□□ 1.09
SNX1-203ENST00000558040 TAF7Q15545 349 aaPredicted RBP21.88■■□□□ 1.09
SNX1-203ENST00000558040 FAM98CQ17RN3 349 aaKnown RBP21.88■■□□□ 1.09
SNX1-203ENST00000558040 TSR2Q969E8 191 aaKnown RBP21.88■■□□□ 1.09
SNX1-203ENST00000558040 SCN11AQ9UI33 1791 aa21.88■■□□□ 1.09
SNX1-203ENST00000558040 VIRMAQ69YN4 1812 aaKnown RBP21.87■■□□□ 1.09
SNX1-203ENST00000558040 CHL1O00533 1208 aa21.87■■□□□ 1.09
SNX1-203ENST00000558040 QTRT2Q9H974 415 aaKnown RBP21.87■■□□□ 1.09
SNX1-203ENST00000558040 GLI3P10071 1580 aa21.87■■□□□ 1.09
SNX1-203ENST00000558040 MBIPQ9NS73 344 aa21.86■■□□□ 1.09
SNX1-203ENST00000558040 TSPYL4Q9UJ04 414 aa21.86■■□□□ 1.09
SNX1-203ENST00000558040 MRC1P22897 1456 aa21.85■■□□□ 1.09
SNX1-203ENST00000558040 A0A0G2JS52 829 aa21.85■■□□□ 1.09
SNX1-203ENST00000558040 MYT1Q01538 1121 aa21.85■■□□□ 1.09
SNX1-203ENST00000558040 THSD7AQ9UPZ6 1657 aa21.85■■□□□ 1.09
SNX1-203ENST00000558040 CT47B1P0C2W7 299 aaPredicted RBP21.84■■□□□ 1.09
SNX1-203ENST00000558040 ERVV-2B6SEH9 535 aa21.83■■□□□ 1.09
SNX1-203ENST00000558040 SLC52A2Q9HAB3 445 aa21.83■■□□□ 1.09
SNX1-203ENST00000558040 CABP4P57796 275 aa21.82■■□□□ 1.08
SNX1-203ENST00000558040 RCAN3Q9UKA8 241 aa21.82■■□□□ 1.08
SNX1-203ENST00000558040 BTBD11A6QL63 1104 aa21.81■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms