RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 ADAMTS13Q76LX8 1427 aa15.25■□□□□ 0.03
LDLR-205ENST00000557933 GOLGA6L22H0YM25 854 aa15.25■□□□□ 0.03
LDLR-205ENST00000557933 AEBP1Q8IUX7 1158 aa15.25■□□□□ 0.03
LDLR-205ENST00000557933 PLEKHM2Q8IWE5 1019 aa15.25■□□□□ 0.03
LDLR-205ENST00000557933 NECTIN2Q92692 538 aa15.25■□□□□ 0.03
LDLR-205ENST00000557933 RBSNQ9H1K0 784 aa15.25■□□□□ 0.03
LDLR-205ENST00000557933 ABCC11Q96J66 1382 aa15.25■□□□□ 0.03
LDLR-205ENST00000557933 CDC45O75419 566 aa15.25■□□□□ 0.03
LDLR-205ENST00000557933 GDPD2Q9HCC8 539 aa15.25■□□□□ 0.03
LDLR-205ENST00000557933 JARID2Q92833 1246 aaPredicted RBP15.24■□□□□ 0.03
LDLR-205ENST00000557933 XRN1Q8IZH2 1706 aaKnown RBP15.24■□□□□ 0.03
LDLR-205ENST00000557933 NCOA3Q9Y6Q9 1424 aa15.24■□□□□ 0.03
LDLR-205ENST00000557933 MCM10Q7L590 875 aa15.24■□□□□ 0.03
LDLR-205ENST00000557933 HDGFL2Q7Z4V5 671 aaPredicted RBP15.24■□□□□ 0.03
LDLR-205ENST00000557933 THEMISQ8N1K5 641 aaPredicted RBP15.24■□□□□ 0.03
LDLR-205ENST00000557933 PIK3R4Q99570 1358 aa15.23■□□□□ 0.03
LDLR-205ENST00000557933 SYCE3A1L190 88 aa15.23■□□□□ 0.03
LDLR-205ENST00000557933 F6X3S4 739 aa15.23■□□□□ 0.03
LDLR-205ENST00000557933 CT47B1P0C2W7 299 aaPredicted RBP15.23■□□□□ 0.03
LDLR-205ENST00000557933 MSNP26038 577 aaKnown RBP15.23■□□□□ 0.03
LDLR-205ENST00000557933 CALD1Q05682 793 aaKnown RBP15.23■□□□□ 0.03
LDLR-205ENST00000557933 ZSCAN23Q3MJ62 389 aa15.23■□□□□ 0.03
LDLR-205ENST00000557933 ANP32BQ92688 251 aaKnown RBP15.23■□□□□ 0.03
LDLR-205ENST00000557933 LARP6Q9BRS8 491 aaKnown RBP15.23■□□□□ 0.03
LDLR-205ENST00000557933 USP32Q8NFA0 1604 aa15.22■□□□□ 0.03
LDLR-205ENST00000557933 SDSP20132 328 aa15.22■□□□□ 0.03
LDLR-205ENST00000557933 MEIS3Q99687 375 aa15.22■□□□□ 0.03
LDLR-205ENST00000557933 NFE2L2Q16236 605 aa15.21■□□□□ 0.03
LDLR-205ENST00000557933 GCC1Q96CN9 775 aa15.21■□□□□ 0.03
LDLR-205ENST00000557933 GLIPR1L2Q4G1C9 344 aa15.21■□□□□ 0.03
LDLR-205ENST00000557933 FCHSD2O94868 740 aa15.2■□□□□ 0.02
LDLR-205ENST00000557933 GPT2Q8TD30 523 aa15.2■□□□□ 0.02
LDLR-205ENST00000557933 ALDH1L2Q3SY69 923 aa15.2■□□□□ 0.02
LDLR-205ENST00000557933 CIZ1Q9ULV3 898 aaPredicted RBP15.2■□□□□ 0.02
LDLR-205ENST00000557933 PTCH1Q13635 1447 aa15.2■□□□□ 0.02
LDLR-205ENST00000557933 CEBPAP49715 358 aaPredicted RBP15.2■□□□□ 0.02
LDLR-205ENST00000557933 ZNF428Q96B54 188 aa15.2■□□□□ 0.02
LDLR-205ENST00000557933 KLHL40Q2TBA0 621 aa15.19■□□□□ 0.02
LDLR-205ENST00000557933 LMBRD1Q9NUN5 540 aa15.19■□□□□ 0.02
LDLR-205ENST00000557933 EXOC6BQ9Y2D4 811 aa15.19■□□□□ 0.02
LDLR-205ENST00000557933 SKOR2Q2VWA4 1001 aaPredicted RBP15.19■□□□□ 0.02
LDLR-205ENST00000557933 TSC1Q92574 1164 aa15.19■□□□□ 0.02
LDLR-205ENST00000557933 TTC22Q5TAA0 569 aa15.18■□□□□ 0.02
LDLR-205ENST00000557933 ZSCAN30Q86W11 494 aa15.18■□□□□ 0.02
LDLR-205ENST00000557933 USP26Q9BXU7 913 aa15.18■□□□□ 0.02
LDLR-205ENST00000557933 UPF3BQ9BZI7 483 aaKnown RBP15.18■□□□□ 0.02
LDLR-205ENST00000557933 ZDHHC9Q9Y397 364 aa15.18■□□□□ 0.02
LDLR-205ENST00000557933 NWD1Q149M9 1564 aa15.18■□□□□ 0.02
LDLR-205ENST00000557933 FAM177BA6PVY3 158 aa15.18■□□□□ 0.02
LDLR-205ENST00000557933 RRP9O43818 475 aaKnown RBP15.18■□□□□ 0.02
LDLR-205ENST00000557933 TMEM63CQ9P1W3 806 aa15.18■□□□□ 0.02
LDLR-205ENST00000557933 CHD2O14647 1828 aaKnown RBP15.18■□□□□ 0.02
LDLR-205ENST00000557933 NEK4P51957 841 aa15.17■□□□□ 0.02
LDLR-205ENST00000557933 CCDC173Q0VFZ6 552 aa15.17■□□□□ 0.02
LDLR-205ENST00000557933 ZNF830Q96NB3 372 aaPredicted RBP15.17■□□□□ 0.02
LDLR-205ENST00000557933 EID1Q9Y6B2 187 aa15.17■□□□□ 0.02
LDLR-205ENST00000557933 LRRC7Q96NW7 1537 aa15.17■□□□□ 0.02
LDLR-205ENST00000557933 COL3A1P02461 1466 aaPredicted RBP15.17■□□□□ 0.02
LDLR-205ENST00000557933 MAP4K4O95819 1239 aaPredicted RBP15.16■□□□□ 0.02
LDLR-205ENST00000557933 GNAI1P63096 354 aa15.16■□□□□ 0.02
LDLR-205ENST00000557933 IL16Q14005 1332 aa15.16■□□□□ 0.02
LDLR-205ENST00000557933 TBX22Q9Y458 520 aa15.16■□□□□ 0.02
LDLR-205ENST00000557933 FOXO3O43524 673 aa15.16■□□□□ 0.02
LDLR-205ENST00000557933 SULT6B1Q6IMI4 303 aa15.16■□□□□ 0.02
LDLR-205ENST00000557933 G2E3Q7L622 706 aa15.15■□□□□ 0.02
LDLR-205ENST00000557933 C17orf53Q8N3J3 647 aaPredicted RBP15.15■□□□□ 0.02
LDLR-205ENST00000557933 PLEKHG5O94827 1062 aa15.15■□□□□ 0.02
LDLR-205ENST00000557933 PLCB2Q00722 1185 aa15.15■□□□□ 0.02
LDLR-205ENST00000557933 TXNDC2Q86VQ3 553 aa15.15■□□□□ 0.02
LDLR-205ENST00000557933 RILPL2Q969X0 211 aa15.15■□□□□ 0.02
LDLR-205ENST00000557933 PALD1Q9ULE6 856 aa15.15■□□□□ 0.02
LDLR-205ENST00000557933 ABCC4O15439 1325 aa15.15■□□□□ 0.02
LDLR-205ENST00000557933 NSD2O96028 1365 aa15.15■□□□□ 0.02
LDLR-205ENST00000557933 RABEP1Q15276 862 aa15.14■□□□□ 0.01
LDLR-205ENST00000557933 SLC4A2P04920 1241 aa15.13■□□□□ 0.01
LDLR-205ENST00000557933 LTKP29376 864 aa15.13■□□□□ 0.01
LDLR-205ENST00000557933 PRDM10Q9NQV6 1147 aa15.13■□□□□ 0.01
LDLR-205ENST00000557933 METP08581 1390 aa15.13■□□□□ 0.01
LDLR-205ENST00000557933 MSH6P52701 1360 aa15.13■□□□□ 0.01
LDLR-205ENST00000557933 CD163L1Q9NR16 1453 aa15.13■□□□□ 0.01
LDLR-205ENST00000557933 TRIM6-TRIM34B2RNG4 842 aa15.13■□□□□ 0.01
LDLR-205ENST00000557933 CEP85Q6P2H3 762 aa15.13■□□□□ 0.01
LDLR-205ENST00000557933 PLPPR3Q6T4P5 718 aa15.13■□□□□ 0.01
LDLR-205ENST00000557933 DCTPP1Q9H773 170 aa15.13■□□□□ 0.01
LDLR-205ENST00000557933 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.13■□□□□ 0.01
LDLR-205ENST00000557933 TOPAZ1Q8N9V7 1692 aa15.13■□□□□ 0.01
LDLR-205ENST00000557933 IL13P35225 146 aa15.13■□□□□ 0.01
LDLR-205ENST00000557933 INTS3Q68E01 1043 aaKnown RBP15.13■□□□□ 0.01
LDLR-205ENST00000557933 BCL11BQ9C0K0 894 aaPredicted RBP15.12■□□□□ 0.01
LDLR-205ENST00000557933 ANO2Q9NQ90 1003 aa15.12■□□□□ 0.01
LDLR-205ENST00000557933 PTMAP06454 111 aaKnown RBP15.12■□□□□ 0.01
LDLR-205ENST00000557933 CFAP44Q96MT7 982 aa15.12■□□□□ 0.01
LDLR-205ENST00000557933 IFT57Q9NWB7 429 aa15.12■□□□□ 0.01
LDLR-205ENST00000557933 PPP1R9BQ96SB3 815 aa15.11■□□□□ 0.01
LDLR-205ENST00000557933 UQCRHLA0A096LP55 91 aa15.11■□□□□ 0.01
LDLR-205ENST00000557933 ST18O60284 1047 aa15.11■□□□□ 0.01
LDLR-205ENST00000557933 UQCRHP07919 91 aa15.11■□□□□ 0.01
LDLR-205ENST00000557933 DDX54Q8TDD1 881 aaKnown RBP15.11■□□□□ 0.01
LDLR-205ENST00000557933 API5Q9BZZ5 524 aaKnown RBP15.11■□□□□ 0.01
LDLR-205ENST00000557933 GADD45BO75293 160 aaPredicted RBP15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms