RNA–Protein interactions for RNA: ENST00000557703.5

SHMT2-234, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-234ENST00000557703 COL3A1P02461 1466 aaPredicted RBP18.33■□□□□ 0.52
SHMT2-234ENST00000557703 RGPD2P0DJD1 1756 aa18.32■□□□□ 0.52
SHMT2-234ENST00000557703 PCDH11XQ9BZA7 1347 aa18.32■□□□□ 0.52
SHMT2-234ENST00000557703 PCDH11YQ9BZA8 1340 aa18.32■□□□□ 0.52
SHMT2-234ENST00000557703 PNNQ9H307 717 aaKnown RBP18.32■□□□□ 0.52
SHMT2-234ENST00000557703 LRRC37A3O60309 1634 aa18.31■□□□□ 0.52
SHMT2-234ENST00000557703 PLEKHO1Q53GL0 409 aaPredicted RBP18.31■□□□□ 0.52
SHMT2-234ENST00000557703 SULT6B1Q6IMI4 303 aa18.31■□□□□ 0.52
SHMT2-234ENST00000557703 USHBP1Q8N6Y0 703 aa18.31■□□□□ 0.52
SHMT2-234ENST00000557703 RGPD1P0DJD0 1748 aa18.31■□□□□ 0.52
SHMT2-234ENST00000557703 EP400Q96L91 3159 aa18.3■□□□□ 0.52
SHMT2-234ENST00000557703 MEGF6O75095 1541 aa18.3■□□□□ 0.52
SHMT2-234ENST00000557703 FCHSD2O94868 740 aa18.3■□□□□ 0.52
SHMT2-234ENST00000557703 MARCH10Q8NA82 808 aaPredicted RBP18.3■□□□□ 0.52
SHMT2-234ENST00000557703 U2SURPO15042 1029 aaKnown RBP18.28■□□□□ 0.52
SHMT2-234ENST00000557703 HSP90AB1P08238 724 aaKnown RBP18.28■□□□□ 0.52
SHMT2-234ENST00000557703 SF3B2Q13435 895 aaKnown RBP18.28■□□□□ 0.52
SHMT2-234ENST00000557703 UPF1Q92900 1129 aaKnown RBP eCLIP18.28■□□□□ 0.52
SHMT2-234ENST00000557703 NKX1-1Q15270 411 aaPredicted RBP18.27■□□□□ 0.52
SHMT2-234ENST00000557703 IFNL2Q8IZJ0 200 aa18.27■□□□□ 0.52
SHMT2-234ENST00000557703 NEFMP07197 916 aa18.25■□□□□ 0.51
SHMT2-234ENST00000557703 U2AF1L5P0DN76 240 aaPredicted RBP18.25■□□□□ 0.51
SHMT2-234ENST00000557703 U2AF1Q01081 240 aaKnown RBP eCLIP18.25■□□□□ 0.51
SHMT2-234ENST00000557703 DDX54Q8TDD1 881 aaKnown RBP18.25■□□□□ 0.51
SHMT2-234ENST00000557703 BCL11BQ9C0K0 894 aaPredicted RBP18.25■□□□□ 0.51
SHMT2-234ENST00000557703 PKD1L3Q7Z443 1732 aa18.25■□□□□ 0.51
SHMT2-234ENST00000557703 HMGB2P26583 209 aaKnown RBP18.24■□□□□ 0.51
SHMT2-234ENST00000557703 CYP27B1O15528 508 aa18.23■□□□□ 0.51
SHMT2-234ENST00000557703 AEBP1Q8IUX7 1158 aa18.23■□□□□ 0.51
SHMT2-234ENST00000557703 HMOX1P09601 288 aa18.22■□□□□ 0.51
SHMT2-234ENST00000557703 C1orf141Q5JVX7 400 aa18.22■□□□□ 0.51
SHMT2-234ENST00000557703 GAS2L2Q8NHY3 880 aa18.22■□□□□ 0.51
SHMT2-234ENST00000557703 DCAF5Q96JK2 942 aa18.22■□□□□ 0.51
SHMT2-234ENST00000557703 PHKG2P15735 406 aa18.21■□□□□ 0.51
SHMT2-234ENST00000557703 BAG6P46379 1132 aa18.21■□□□□ 0.51
SHMT2-234ENST00000557703 RSPH6AQ9H0K4 717 aa18.21■□□□□ 0.51
SHMT2-234ENST00000557703 PLSCR1O15162 318 aa18.2■□□□□ 0.5
SHMT2-234ENST00000557703 AKAP4Q5JQC9 854 aa18.2■□□□□ 0.5
SHMT2-234ENST00000557703 FAM182BQ5T319 152 aa18.2■□□□□ 0.5
SHMT2-234ENST00000557703 KAT6BQ8WYB5 2073 aa18.19■□□□□ 0.5
SHMT2-234ENST00000557703 ERVV-2B6SEH9 535 aa18.19■□□□□ 0.5
SHMT2-234ENST00000557703 TRIM37O94972 964 aa18.19■□□□□ 0.5
SHMT2-234ENST00000557703 WDR43Q15061 677 aaKnown RBP eCLIP18.19■□□□□ 0.5
SHMT2-234ENST00000557703 ZNF530Q6P9A1 599 aaPredicted RBP18.19■□□□□ 0.5
SHMT2-234ENST00000557703 SBF2Q86WG5 1849 aa18.18■□□□□ 0.5
SHMT2-234ENST00000557703 SHANK3Q9BYB0 1731 aa18.18■□□□□ 0.5
SHMT2-234ENST00000557703 PRKAR2BP31323 418 aa18.17■□□□□ 0.5
SHMT2-234ENST00000557703 HTATSF1O43719 755 aaKnown RBP18.16■□□□□ 0.5
SHMT2-234ENST00000557703 APBA3O96018 575 aa18.15■□□□□ 0.5
SHMT2-234ENST00000557703 MTHFSDQ2M296 383 aaKnown RBP18.15■□□□□ 0.5
SHMT2-234ENST00000557703 PRIM1P49642 420 aaKnown RBP18.14■□□□□ 0.49
SHMT2-234ENST00000557703 PLEKHF1Q96S99 279 aa18.14■□□□□ 0.49
SHMT2-234ENST00000557703 NHSQ6T4R5 1651 aa18.14■□□□□ 0.49
SHMT2-234ENST00000557703 GNAT3A8MTJ3 354 aa18.13■□□□□ 0.49
SHMT2-234ENST00000557703 SMARCC1Q92922 1105 aaPredicted RBP18.13■□□□□ 0.49
SHMT2-234ENST00000557703 MAPK8IP3Q9UPT6 1336 aa18.13■□□□□ 0.49
SHMT2-234ENST00000557703 CCER2I3L3R5 266 aa18.11■□□□□ 0.49
SHMT2-234ENST00000557703 KCNQ2O43526 872 aa18.11■□□□□ 0.49
SHMT2-234ENST00000557703 DIEXFQ68CQ4 756 aaKnown RBP18.11■□□□□ 0.49
SHMT2-234ENST00000557703 RUNDC1Q96C34 613 aa18.11■□□□□ 0.49
SHMT2-234ENST00000557703 ACSBG1Q96GR2 724 aa18.11■□□□□ 0.49
SHMT2-234ENST00000557703 PHACTR3Q96KR7 559 aa18.11■□□□□ 0.49
SHMT2-234ENST00000557703 CAMKK2Q96RR4 588 aa18.11■□□□□ 0.49
SHMT2-234ENST00000557703 MRS2Q9HD23 443 aa18.11■□□□□ 0.49
SHMT2-234ENST00000557703 TMOD3Q9NYL9 352 aa18.11■□□□□ 0.49
SHMT2-234ENST00000557703 MAP3K5Q99683 1374 aa18.11■□□□□ 0.49
SHMT2-234ENST00000557703 RGPD3A6NKT7 1758 aaPredicted RBP18.11■□□□□ 0.49
SHMT2-234ENST00000557703 RGPD4Q7Z3J3 1758 aa18.11■□□□□ 0.49
SHMT2-234ENST00000557703 TNS1Q9HBL0 1735 aaKnown RBP18.1■□□□□ 0.49
SHMT2-234ENST00000557703 PNISRQ8TF01 805 aaKnown RBP18.1■□□□□ 0.49
SHMT2-234ENST00000557703 RTF1Q92541 710 aaKnown RBP18.1■□□□□ 0.49
SHMT2-234ENST00000557703 SYTL4Q96C24 671 aaPredicted RBP18.1■□□□□ 0.49
SHMT2-234ENST00000557703 ADAMTS8Q9UP79 889 aa18.1■□□□□ 0.49
SHMT2-234ENST00000557703 CABP4P57796 275 aa18.09■□□□□ 0.49
SHMT2-234ENST00000557703 NFE2L2Q16236 605 aa18.09■□□□□ 0.49
SHMT2-234ENST00000557703 SLC27A3Q5K4L6 730 aa18.09■□□□□ 0.49
SHMT2-234ENST00000557703 RNMTO43148 476 aaKnown RBP18.08■□□□□ 0.48
SHMT2-234ENST00000557703 LMOD3Q0VAK6 560 aa18.08■□□□□ 0.48
SHMT2-234ENST00000557703 NCBP3Q53F19 620 aaKnown RBP18.08■□□□□ 0.48
SHMT2-234ENST00000557703 MPRIPQ6WCQ1 1025 aa18.08■□□□□ 0.48
SHMT2-234ENST00000557703 EN1Q05925 392 aaPredicted RBP18.07■□□□□ 0.48
SHMT2-234ENST00000557703 PIGBQ92521 554 aa18.07■□□□□ 0.48
SHMT2-234ENST00000557703 SLC52A2Q9HAB3 445 aa18.07■□□□□ 0.48
SHMT2-234ENST00000557703 KDM6AO15550 1401 aaPredicted RBP18.06■□□□□ 0.48
SHMT2-234ENST00000557703 DOT1LQ8TEK3 1739 aa18.06■□□□□ 0.48
SHMT2-234ENST00000557703 CEMIPQ8WUJ3 1361 aa18.06■□□□□ 0.48
SHMT2-234ENST00000557703 NGEFQ8N5V2 710 aa18.06■□□□□ 0.48
SHMT2-234ENST00000557703 ADAMTS7Q9UKP4 1686 aa18.06■□□□□ 0.48
SHMT2-234ENST00000557703 SCN11AQ9UI33 1791 aa18.05■□□□□ 0.48
SHMT2-234ENST00000557703 TEFQ10587 303 aa18.05■□□□□ 0.48
SHMT2-234ENST00000557703 DEFB132Q7Z7B7 95 aa18.05■□□□□ 0.48
SHMT2-234ENST00000557703 BTAF1O14981 1849 aa18.05■□□□□ 0.48
SHMT2-234ENST00000557703 ITGB4P16144 1822 aa18.05■□□□□ 0.48
SHMT2-234ENST00000557703 NFATC2IPQ8NCF5 419 aa18.04■□□□□ 0.48
SHMT2-234ENST00000557703 MRC1P22897 1456 aa18.03■□□□□ 0.48
SHMT2-234ENST00000557703 TMPOP42166 694 aaKnown RBP18.03■□□□□ 0.48
SHMT2-234ENST00000557703 EZH2Q15910 746 aaKnown RBP18.03■□□□□ 0.48
SHMT2-234ENST00000557703 TXNRD1Q16881 649 aa18.03■□□□□ 0.48
SHMT2-234ENST00000557703 NBPF14Q5TI25 921 aa18.03■□□□□ 0.48
SHMT2-234ENST00000557703 PTF1AQ7RTS3 328 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms