RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 SIN3AQ96ST3 1273 aa11.7□□□□□ -0.54
CCDC88C-214ENST00000557507 ANKRD36BQ8N2N9 1353 aa11.69□□□□□ -0.54
CCDC88C-214ENST00000557507 POLD1P28340 1107 aa11.69□□□□□ -0.54
CCDC88C-214ENST00000557507 DDX54Q8TDD1 881 aaKnown RBP11.68□□□□□ -0.54
CCDC88C-214ENST00000557507 C4BP0C0L5 1744 aa11.67□□□□□ -0.54
CCDC88C-214ENST00000557507 YBX3P16989 372 aaKnown RBP eCLIP11.67□□□□□ -0.54
CCDC88C-214ENST00000557507 TMC1Q8TDI8 760 aa11.67□□□□□ -0.54
CCDC88C-214ENST00000557507 LTV1Q96GA3 475 aaPredicted RBP11.67□□□□□ -0.54
CCDC88C-214ENST00000557507 SLC12A5Q9H2X9 1139 aa11.67□□□□□ -0.54
CCDC88C-214ENST00000557507 TFCP2L1Q9NZI6 479 aa11.67□□□□□ -0.54
CCDC88C-214ENST00000557507 PKD1L3Q7Z443 1732 aa11.66□□□□□ -0.54
CCDC88C-214ENST00000557507 MAP2P11137 1827 aaKnown RBP11.66□□□□□ -0.54
CCDC88C-214ENST00000557507 PRIM1P49642 420 aaKnown RBP11.66□□□□□ -0.54
CCDC88C-214ENST00000557507 IP6K1Q92551 441 aa11.66□□□□□ -0.54
CCDC88C-214ENST00000557507 SYTL4Q96C24 671 aaPredicted RBP11.66□□□□□ -0.54
CCDC88C-214ENST00000557507 ATP10DQ9P241 1426 aa11.66□□□□□ -0.54
CCDC88C-214ENST00000557507 HDGFL2Q7Z4V5 671 aaPredicted RBP11.65□□□□□ -0.54
CCDC88C-214ENST00000557507 MAP3K19Q56UN5 1328 aa11.64□□□□□ -0.55
CCDC88C-214ENST00000557507 NEUROD1Q13562 356 aa11.64□□□□□ -0.55
CCDC88C-214ENST00000557507 IFFO2Q5TF58 517 aa11.64□□□□□ -0.55
CCDC88C-214ENST00000557507 MSL1Q68DK7 614 aa11.64□□□□□ -0.55
CCDC88C-214ENST00000557507 COL23A1Q86Y22 540 aaPredicted RBP11.64□□□□□ -0.55
CCDC88C-214ENST00000557507 KIAA1551Q9HCM1 1747 aa11.63□□□□□ -0.55
CCDC88C-214ENST00000557507 KIF13BQ9NQT8 1826 aa11.63□□□□□ -0.55
CCDC88C-214ENST00000557507 FBLN1P23142 703 aa11.63□□□□□ -0.55
CCDC88C-214ENST00000557507 CCNL1Q9UK58 526 aaPredicted RBP11.63□□□□□ -0.55
CCDC88C-214ENST00000557507 ADCY9O60503 1353 aa11.63□□□□□ -0.55
CCDC88C-214ENST00000557507 HOXC9P31274 260 aa11.62□□□□□ -0.55
CCDC88C-214ENST00000557507 CARD11Q9BXL7 1154 aa11.62□□□□□ -0.55
CCDC88C-214ENST00000557507 TERF2IPQ9NYB0 399 aa11.62□□□□□ -0.55
CCDC88C-214ENST00000557507 ANKRD26Q9UPS8 1709 aa11.62□□□□□ -0.55
CCDC88C-214ENST00000557507 N4BP2Q86UW6 1770 aaPredicted RBP11.62□□□□□ -0.55
CCDC88C-214ENST00000557507 BRCA1P38398 1863 aaKnown RBP11.61□□□□□ -0.55
CCDC88C-214ENST00000557507 MSH5O43196 834 aa11.61□□□□□ -0.55
CCDC88C-214ENST00000557507 GRIN3BO60391 1043 aa11.61□□□□□ -0.55
CCDC88C-214ENST00000557507 ZCRB1Q8TBF4 217 aaKnown RBP11.61□□□□□ -0.55
CCDC88C-214ENST00000557507 RTL1A6NKG5 1358 aa11.61□□□□□ -0.55
CCDC88C-214ENST00000557507 USP47Q96K76 1375 aa11.61□□□□□ -0.55
CCDC88C-214ENST00000557507 CICQ96RK0 1608 aaPredicted RBP11.6□□□□□ -0.55
CCDC88C-214ENST00000557507 AMPHP49418 695 aa11.59□□□□□ -0.55
CCDC88C-214ENST00000557507 USHBP1Q8N6Y0 703 aa11.59□□□□□ -0.55
CCDC88C-214ENST00000557507 PALLDQ8WX93 1383 aa11.58□□□□□ -0.56
CCDC88C-214ENST00000557507 NBPF6Q5VWK0 638 aa11.58□□□□□ -0.56
CCDC88C-214ENST00000557507 COG3Q96JB2 828 aa11.58□□□□□ -0.56
CCDC88C-214ENST00000557507 NBPF4Q96M43 638 aa11.58□□□□□ -0.56
CCDC88C-214ENST00000557507 RRS1Q15050 365 aaKnown RBP11.57□□□□□ -0.56
CCDC88C-214ENST00000557507 AMIGO3Q86WK7 504 aa11.57□□□□□ -0.56
CCDC88C-214ENST00000557507 PUS7Q96PZ0 661 aaKnown RBP11.57□□□□□ -0.56
CCDC88C-214ENST00000557507 TESK2Q96S53 571 aa11.57□□□□□ -0.56
CCDC88C-214ENST00000557507 SMG6Q86US8 1419 aaKnown RBP11.57□□□□□ -0.56
CCDC88C-214ENST00000557507 COL5A3P25940 1745 aaPredicted RBP11.57□□□□□ -0.56
CCDC88C-214ENST00000557507 C4AP0C0L4 1744 aa11.56□□□□□ -0.56
CCDC88C-214ENST00000557507 ZNF526Q8TF50 670 aaPredicted RBP11.56□□□□□ -0.56
CCDC88C-214ENST00000557507 GPBP1L1Q9HC44 474 aaPredicted RBP11.56□□□□□ -0.56
CCDC88C-214ENST00000557507 CD2APQ9Y5K6 639 aa11.56□□□□□ -0.56
CCDC88C-214ENST00000557507 CGNL1Q0VF96 1302 aa11.56□□□□□ -0.56
CCDC88C-214ENST00000557507 ARFGEF1Q9Y6D6 1849 aa11.56□□□□□ -0.56
CCDC88C-214ENST00000557507 SMIM5Q71RC9 77 aa11.55□□□□□ -0.56
CCDC88C-214ENST00000557507 WWC3Q9ULE0 1092 aa11.55□□□□□ -0.56
CCDC88C-214ENST00000557507 PCDH11XQ9BZA7 1347 aa11.55□□□□□ -0.56
CCDC88C-214ENST00000557507 PCDH11YQ9BZA8 1340 aa11.55□□□□□ -0.56
CCDC88C-214ENST00000557507 WDR90Q96KV7 1748 aa11.55□□□□□ -0.56
CCDC88C-214ENST00000557507 HSPA6P17066 643 aa11.54□□□□□ -0.56
CCDC88C-214ENST00000557507 RAPGEF4Q8WZA2 1011 aa11.54□□□□□ -0.56
CCDC88C-214ENST00000557507 IGSF1Q8N6C5 1336 aa11.54□□□□□ -0.56
CCDC88C-214ENST00000557507 MYH14Q7Z406 1995 aaKnown RBP11.54□□□□□ -0.56
CCDC88C-214ENST00000557507 INSRP06213 1382 aa11.54□□□□□ -0.56
CCDC88C-214ENST00000557507 NCAPD2Q15021 1401 aa11.53□□□□□ -0.56
CCDC88C-214ENST00000557507 ZNF831Q5JPB2 1677 aa11.53□□□□□ -0.56
CCDC88C-214ENST00000557507 CYP27B1O15528 508 aa11.53□□□□□ -0.56
CCDC88C-214ENST00000557507 TATP17735 454 aaPredicted RBP11.53□□□□□ -0.56
CCDC88C-214ENST00000557507 MPRIPQ6WCQ1 1025 aa11.53□□□□□ -0.56
CCDC88C-214ENST00000557507 GGNBP2Q9H3C7 697 aa11.53□□□□□ -0.56
CCDC88C-214ENST00000557507 FLT4P35916 1363 aa11.53□□□□□ -0.56
CCDC88C-214ENST00000557507 TONSLQ96HA7 1378 aa11.53□□□□□ -0.56
CCDC88C-214ENST00000557507 ST20-MTHFSA0A0A6YYL1 179 aa11.52□□□□□ -0.57
CCDC88C-214ENST00000557507 FYB1O15117 783 aa11.52□□□□□ -0.57
CCDC88C-214ENST00000557507 PHF14O94880 888 aa11.52□□□□□ -0.57
CCDC88C-214ENST00000557507 HSP90AB2PQ58FF8 381 aa11.52□□□□□ -0.57
CCDC88C-214ENST00000557507 FLAD1Q8NFF5 587 aa11.52□□□□□ -0.57
CCDC88C-214ENST00000557507 SBF1O95248 1867 aa11.52□□□□□ -0.57
CCDC88C-214ENST00000557507 NSD3Q9BZ95 1437 aa11.52□□□□□ -0.57
CCDC88C-214ENST00000557507 PXDNLA1KZ92 1463 aa11.51□□□□□ -0.57
CCDC88C-214ENST00000557507 VIRMAQ69YN4 1812 aaKnown RBP11.51□□□□□ -0.57
CCDC88C-214ENST00000557507 AK7Q96M32 723 aa11.51□□□□□ -0.57
CCDC88C-214ENST00000557507 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.5□□□□□ -0.57
CCDC88C-214ENST00000557507 KIF3CO14782 793 aa11.5□□□□□ -0.57
CCDC88C-214ENST00000557507 LINC00116Q8NCU8 138 aa11.49□□□□□ -0.57
CCDC88C-214ENST00000557507 PIGBQ92521 554 aa11.49□□□□□ -0.57
CCDC88C-214ENST00000557507 KIF24Q5T7B8 1368 aa11.49□□□□□ -0.57
CCDC88C-214ENST00000557507 CCDC88AQ3V6T2 1871 aa11.49□□□□□ -0.57
CCDC88C-214ENST00000557507 SMARCC1Q92922 1105 aaPredicted RBP11.48□□□□□ -0.57
CCDC88C-214ENST00000557507 TJP1Q07157 1748 aa11.47□□□□□ -0.57
CCDC88C-214ENST00000557507 C10orf71Q711Q0 1435 aa11.47□□□□□ -0.57
CCDC88C-214ENST00000557507 LOC102724428A0A0B4J2F2 783 aa11.47□□□□□ -0.57
CCDC88C-214ENST00000557507 SSFA2P28290 1259 aa11.47□□□□□ -0.57
CCDC88C-214ENST00000557507 SIK1P57059 783 aa11.47□□□□□ -0.57
CCDC88C-214ENST00000557507 ITPK1Q13572 414 aa11.47□□□□□ -0.57
CCDC88C-214ENST00000557507 EMILIN1Q9Y6C2 1016 aa11.47□□□□□ -0.57
CCDC88C-214ENST00000557507 TNRC6CQ9HCJ0 1690 aaKnown RBP11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms